PDB Short entry for 6P8E HEADER CELL CYCLE, TRANSFERASE 07-JUN-19 6P8E TITLE CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH CYCLIND1 AND P27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G1/S-SPECIFIC CYCLIN-D1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B-CELL LYMPHOMA 1 PROTEIN,BCL-1,BCL-1 ONCOGENE,PRAD1 COMPND 5 ONCOGENE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE 4; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CELL DIVISION PROTEIN KINASE 4,PSK-J3; COMPND 11 EC: 2.7.11.22; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: CYCLIN-DEPENDENT KINASE INHIBITOR 1B; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: CYCLIN-DEPENDENT KINASE INHIBITOR P27,P27KIP1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCND1, BCL1, PRAD1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CDK4; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CDKN1B, KIP1; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CYCLIN-DEPENDENT KINASE, KINASE INHIBITOR, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,K.BUNCH,S.M.TRIPATHI, AUTHOR 2 K.M.SHOKAT,S.M.RUBIN REVDAT 2 13-MAR-24 6P8E 1 REMARK REVDAT 1 25-DEC-19 6P8E 0 JRNL AUTH K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,V.KUMARASAMY, JRNL AUTH 2 T.U.WIJERATNE,K.L.BUNCH,S.TRIPATHI,E.S.KNUDSEN, JRNL AUTH 3 A.K.WITKIEWICZ,K.M.SHOKAT,S.M.RUBIN JRNL TITL P27 ALLOSTERICALLY ACTIVATES CYCLIN-DEPENDENT KINASE 4 AND JRNL TITL 2 ANTAGONIZES PALBOCICLIB INHIBITION. JRNL REF SCIENCE V. 366 2019 JRNL REFN ESSN 1095-9203 JRNL PMID 31831640 JRNL DOI 10.1126/SCIENCE.AAW2106 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 33872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 93.7176 - 5.4080 1.00 2794 185 0.1679 0.1990 REMARK 3 2 5.4080 - 4.2925 1.00 2670 162 0.1400 0.1897 REMARK 3 3 4.2925 - 3.7499 1.00 2626 152 0.1390 0.1939 REMARK 3 4 3.7499 - 3.4070 1.00 2617 147 0.1551 0.1918 REMARK 3 5 3.4070 - 3.1628 0.99 2583 140 0.1852 0.2493 REMARK 3 6 3.1628 - 2.9763 0.97 2553 133 0.1972 0.2760 REMARK 3 7 2.9763 - 2.8272 0.96 2551 109 0.1969 0.2983 REMARK 3 8 2.8272 - 2.7042 0.95 2449 126 0.1936 0.2638 REMARK 3 9 2.7042 - 2.6001 0.93 2437 121 0.2069 0.2365 REMARK 3 10 2.6001 - 2.5103 0.90 2338 137 0.2148 0.2668 REMARK 3 11 2.5103 - 2.4318 0.86 2212 128 0.2137 0.2871 REMARK 3 12 2.4318 - 2.3623 0.84 2180 121 0.2315 0.2991 REMARK 3 13 2.3623 - 2.3001 0.82 2086 115 0.2380 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4612 REMARK 3 ANGLE : 0.886 6242 REMARK 3 CHIRALITY : 0.048 695 REMARK 3 PLANARITY : 0.005 811 REMARK 3 DIHEDRAL : 5.444 2843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 19:36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6580 4.7484 54.3342 REMARK 3 T TENSOR REMARK 3 T11: 0.5158 T22: 0.6042 REMARK 3 T33: 0.3853 T12: -0.0887 REMARK 3 T13: 0.0373 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.4318 L22: 4.3983 REMARK 3 L33: 8.9702 L12: 4.2913 REMARK 3 L13: -4.9498 L23: -5.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.4468 S13: -0.2265 REMARK 3 S21: -0.2588 S22: 0.0148 S23: 0.1836 REMARK 3 S31: 0.5886 S32: -0.7848 S33: -0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 37:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9379 21.1457 43.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2090 REMARK 3 T33: 0.2591 T12: -0.0092 REMARK 3 T13: 0.0398 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 6.3899 L22: 4.6234 REMARK 3 L33: 5.1995 L12: -1.7595 REMARK 3 L13: 0.1769 L23: -0.8567 REMARK 3 S TENSOR REMARK 3 S11: 0.3016 S12: 0.3881 S13: 0.2329 REMARK 3 S21: -0.4816 S22: -0.1094 S23: -0.0601 REMARK 3 S31: -0.0858 S32: -0.2586 S33: -0.1590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 90:156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3185 24.6525 53.3009 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.2104 REMARK 3 T33: 0.4496 T12: -0.0181 REMARK 3 T13: 0.0456 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.5979 L22: 2.5631 REMARK 3 L33: 2.7584 L12: 0.0101 REMARK 3 L13: -0.7493 L23: -0.3056 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: -0.1815 S13: 0.6838 REMARK 3 S21: 0.1285 S22: 0.0278 S23: -0.3564 REMARK 3 S31: -0.3776 S32: 0.1433 S33: -0.1426 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 157:191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4155 0.2067 44.9784 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.2936 REMARK 3 T33: 0.2785 T12: -0.0123 REMARK 3 T13: -0.0621 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 6.7450 L22: 4.8487 REMARK 3 L33: 5.2629 L12: 2.2254 REMARK 3 L13: -3.0519 L23: -1.4879 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.2833 S13: -0.5049 REMARK 3 S21: 0.3314 S22: -0.0685 S23: -0.4323 REMARK 3 S31: 0.2712 S32: 0.1761 S33: 0.0355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 192:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8139 2.1399 37.1901 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.3748 REMARK 3 T33: 0.2012 T12: 0.0051 REMARK 3 T13: 0.0296 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.4344 L22: 0.5367 REMARK 3 L33: 3.0033 L12: 1.1518 REMARK 3 L13: -1.0774 L23: -1.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.1385 S12: 0.3236 S13: -0.1857 REMARK 3 S21: -0.4124 S22: -0.0293 S23: -0.2240 REMARK 3 S31: 0.2168 S32: 0.1184 S33: 0.1499 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 226:240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1825 -0.5340 39.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.3678 T22: 0.3795 REMARK 3 T33: 0.3732 T12: 0.0175 REMARK 3 T13: -0.0034 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 4.8548 L22: 6.0124 REMARK 3 L33: 5.8746 L12: -0.5957 REMARK 3 L13: 0.0683 L23: 5.8972 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.3038 S13: 0.3044 REMARK 3 S21: -0.5662 S22: -0.2945 S23: 0.9145 REMARK 3 S31: -0.5971 S32: -0.4926 S33: 0.3538 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 241:265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9584 8.6262 29.8218 REMARK 3 T TENSOR REMARK 3 T11: 0.5544 T22: 0.4418 REMARK 3 T33: 0.3362 T12: -0.0085 REMARK 3 T13: 0.1339 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 3.5181 L22: 7.4042 REMARK 3 L33: 9.1906 L12: 2.0566 REMARK 3 L13: -5.5437 L23: -2.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.7845 S13: 0.2544 REMARK 3 S21: -0.8093 S22: 0.2656 S23: -0.6862 REMARK 3 S31: -0.6024 S32: 0.0052 S33: -0.2291 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 19:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3540 25.0361 68.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.4588 T22: 0.4894 REMARK 3 T33: 0.4167 T12: -0.0070 REMARK 3 T13: 0.0535 T23: -0.1844 REMARK 3 L TENSOR REMARK 3 L11: 3.4136 L22: 3.1618 REMARK 3 L33: 3.4055 L12: -0.7769 REMARK 3 L13: -3.3866 L23: 0.2665 REMARK 3 S TENSOR REMARK 3 S11: 0.1870 S12: -0.8792 S13: 1.0577 REMARK 3 S21: 0.2109 S22: 0.1112 S23: -0.1024 REMARK 3 S31: -0.4282 S32: 0.2701 S33: -0.2301 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 94:296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4670 2.0952 80.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.4392 T22: 0.5681 REMARK 3 T33: 0.2150 T12: -0.0837 REMARK 3 T13: -0.0580 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.0165 L22: 4.4519 REMARK 3 L33: 4.4257 L12: -0.6171 REMARK 3 L13: 0.8518 L23: -0.7231 REMARK 3 S TENSOR REMARK 3 S11: 0.2274 S12: -0.6093 S13: -0.2014 REMARK 3 S21: 0.7042 S22: -0.0058 S23: -0.0491 REMARK 3 S31: 0.2065 S32: -0.0266 S33: -0.1919 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN C AND RESID 24:37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0854 25.8751 43.2939 REMARK 3 T TENSOR REMARK 3 T11: 0.3486 T22: 0.5975 REMARK 3 T33: 0.8161 T12: -0.0945 REMARK 3 T13: 0.1065 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.5927 L22: 3.5583 REMARK 3 L33: 8.8356 L12: 1.4005 REMARK 3 L13: 1.7932 L23: 5.1697 REMARK 3 S TENSOR REMARK 3 S11: 0.3463 S12: 0.2794 S13: 0.8343 REMARK 3 S21: 0.4593 S22: 0.1065 S23: -1.2212 REMARK 3 S31: 0.0053 S32: 1.2411 S33: -0.3788 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN C AND RESID 38:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1814 39.6160 57.6361 REMARK 3 T TENSOR REMARK 3 T11: 0.7069 T22: 0.4751 REMARK 3 T33: 1.1114 T12: -0.0419 REMARK 3 T13: 0.2363 T23: -0.1029 REMARK 3 L TENSOR REMARK 3 L11: 4.8774 L22: 0.0041 REMARK 3 L33: 5.2371 L12: 0.0346 REMARK 3 L13: -4.9671 L23: -0.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.8580 S12: -0.2693 S13: 1.6389 REMARK 3 S21: 0.4907 S22: -0.3162 S23: -0.1114 REMARK 3 S31: -1.5259 S32: 0.2627 S33: -0.8466 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN C AND RESID 60:64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4774 37.3052 70.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.7843 T22: 0.6227 REMARK 3 T33: 1.2376 T12: -0.0252 REMARK 3 T13: 0.2503 T23: -0.4799 REMARK 3 L TENSOR REMARK 3 L11: 1.2662 L22: 5.4928 REMARK 3 L33: 5.7396 L12: -1.4452 REMARK 3 L13: 0.4548 L23: 2.7847 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.4381 S13: 0.8889 REMARK 3 S21: 0.2988 S22: 0.4997 S23: -0.5913 REMARK 3 S31: -0.8393 S32: 0.5291 S33: 0.0919 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN C AND RESID 65:69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0900 38.0936 75.2549 REMARK 3 T TENSOR REMARK 3 T11: 1.1903 T22: 1.1917 REMARK 3 T33: 1.4567 T12: -0.5174 REMARK 3 T13: 0.4103 T23: -0.6695 REMARK 3 L TENSOR REMARK 3 L11: 4.4202 L22: 5.1888 REMARK 3 L33: 1.3846 L12: 2.4375 REMARK 3 L13: -2.4725 L23: -1.2903 REMARK 3 S TENSOR REMARK 3 S11: -0.7336 S12: 0.4779 S13: -0.3644 REMARK 3 S21: -0.4410 S22: 0.2781 S23: -0.6680 REMARK 3 S31: -0.1365 S32: 0.1689 S33: -0.1626 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN C AND RESID 70:74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9098 41.2086 71.4194 REMARK 3 T TENSOR REMARK 3 T11: 1.0424 T22: 0.7972 REMARK 3 T33: 1.7235 T12: 0.0660 REMARK 3 T13: 0.2594 T23: -0.4154 REMARK 3 L TENSOR REMARK 3 L11: 6.6449 L22: 7.0735 REMARK 3 L33: 7.5866 L12: -4.8966 REMARK 3 L13: -2.1845 L23: -3.2690 REMARK 3 S TENSOR REMARK 3 S11: -0.9453 S12: -2.0931 S13: 3.3599 REMARK 3 S21: 0.7619 S22: 0.1095 S23: 1.0690 REMARK 3 S31: -2.1083 S32: -0.6303 S33: 0.8589 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN C AND RESID 75:80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1287 34.7710 80.7920 REMARK 3 T TENSOR REMARK 3 T11: 1.1606 T22: 1.0753 REMARK 3 T33: 1.0148 T12: -0.0137 REMARK 3 T13: 0.2903 T23: -0.6068 REMARK 3 L TENSOR REMARK 3 L11: 2.7371 L22: 4.7590 REMARK 3 L33: 8.1422 L12: 0.9541 REMARK 3 L13: 2.1885 L23: -2.4862 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: -1.0123 S13: 0.4283 REMARK 3 S21: 1.9073 S22: 0.6717 S23: -0.3452 REMARK 3 S31: -0.6935 S32: -0.5381 S33: -0.2851 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000240760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 93.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS (7.0) 200MM MGCL2 25%PEG REMARK 280 8000, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.20500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.64000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 266 REMARK 465 ASP A 267 REMARK 465 GLY B -1 REMARK 465 GLU B 0 REMARK 465 PHE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 GLY B 13 REMARK 465 VAL B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 ARG B 79 REMARK 465 THR B 80 REMARK 465 ASP B 81 REMARK 465 ARG B 82 REMARK 465 ALA B 159 REMARK 465 ARG B 160 REMARK 465 ILE B 161 REMARK 465 TYR B 162 REMARK 465 SER B 163 REMARK 465 TYR B 164 REMARK 465 GLN B 165 REMARK 465 MET B 166 REMARK 465 ALA B 167 REMARK 465 LEU B 168 REMARK 465 THR B 169 REMARK 465 PRO B 170 REMARK 465 VAL B 171 REMARK 465 VAL B 172 REMARK 465 VAL B 173 REMARK 465 GLY B 297 REMARK 465 ASN B 298 REMARK 465 PRO B 299 REMARK 465 GLU B 300 REMARK 465 GLY C 22 REMARK 465 GLU C 23 REMARK 465 LYS C 81 REMARK 465 GLY C 82 REMARK 465 SER C 83 REMARK 465 LEU C 84 REMARK 465 PRO C 85 REMARK 465 GLU C 86 REMARK 465 PHE C 87 REMARK 465 TYR C 88 REMARK 465 TYR C 89 REMARK 465 ARG C 90 REMARK 465 PRO C 91 REMARK 465 PRO C 92 REMARK 465 ARG C 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 238 63.65 62.85 REMARK 500 SER B 28 -125.83 -116.91 REMARK 500 ARG B 136 -18.60 86.40 REMARK 500 ALA B 154 -72.88 -117.77 REMARK 500 ASP B 155 78.51 -107.88 REMARK 500 SER B 186 -158.16 -102.25 REMARK 500 ALA B 189 -149.35 -136.21 REMARK 500 LYS B 208 140.59 -170.83 REMARK 500 PRO B 242 176.29 -58.77 REMARK 500 ASN C 61 55.67 31.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 135 NE2 REMARK 620 2 ALA B 154 N 129.3 REMARK 620 3 ASP B 155 N 133.1 88.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 DBREF 6P8E A 19 267 UNP P24385 CCND1_HUMAN 19 267 DBREF 6P8E B 2 300 UNP P11802 CDK4_HUMAN 2 303 DBREF 6P8E C 25 93 UNP P46527 CDN1B_HUMAN 25 93 SEQADV 6P8E GLY B -1 UNP P11802 EXPRESSION TAG SEQADV 6P8E GLU B 0 UNP P11802 EXPRESSION TAG SEQADV 6P8E PHE B 1 UNP P11802 EXPRESSION TAG SEQADV 6P8E B UNP P11802 GLY 42 DELETION SEQADV 6P8E B UNP P11802 GLY 43 DELETION SEQADV 6P8E B UNP P11802 GLY 44 DELETION SEQADV 6P8E GLU B 43 UNP P11802 GLY 46 ENGINEERED MUTATION SEQADV 6P8E GLU B 44 UNP P11802 GLY 47 ENGINEERED MUTATION SEQADV 6P8E GLY C 22 UNP P46527 EXPRESSION TAG SEQADV 6P8E GLU C 23 UNP P46527 EXPRESSION TAG SEQADV 6P8E PHE C 24 UNP P46527 EXPRESSION TAG SEQRES 1 A 249 ASP ALA ASN LEU LEU ASN ASP ARG VAL LEU ARG ALA MET SEQRES 2 A 249 LEU LYS ALA GLU GLU THR CYS ALA PRO SER VAL SER TYR SEQRES 3 A 249 PHE LYS CYS VAL GLN LYS GLU VAL LEU PRO SER MET ARG SEQRES 4 A 249 LYS ILE VAL ALA THR TRP MET LEU GLU VAL CYS GLU GLU SEQRES 5 A 249 GLN LYS CYS GLU GLU GLU VAL PHE PRO LEU ALA MET ASN SEQRES 6 A 249 TYR LEU ASP ARG PHE LEU SER LEU GLU PRO VAL LYS LYS SEQRES 7 A 249 SER ARG LEU GLN LEU LEU GLY ALA THR CYS MET PHE VAL SEQRES 8 A 249 ALA SER LYS MET LYS GLU THR ILE PRO LEU THR ALA GLU SEQRES 9 A 249 LYS LEU CYS ILE TYR THR ASP ASN SER ILE ARG PRO GLU SEQRES 10 A 249 GLU LEU LEU GLN MET GLU LEU LEU LEU VAL ASN LYS LEU SEQRES 11 A 249 LYS TRP ASN LEU ALA ALA MET THR PRO HIS ASP PHE ILE SEQRES 12 A 249 GLU HIS PHE LEU SER LYS MET PRO GLU ALA GLU GLU ASN SEQRES 13 A 249 LYS GLN ILE ILE ARG LYS HIS ALA GLN THR PHE VAL ALA SEQRES 14 A 249 LEU CYS ALA THR ASP VAL LYS PHE ILE SER ASN PRO PRO SEQRES 15 A 249 SER MET VAL ALA ALA GLY SER VAL VAL ALA ALA VAL GLN SEQRES 16 A 249 GLY LEU ASN LEU ARG SER PRO ASN ASN PHE LEU SER TYR SEQRES 17 A 249 TYR ARG LEU THR ARG PHE LEU SER ARG VAL ILE LYS CYS SEQRES 18 A 249 ASP PRO ASP CYS LEU ARG ALA CYS GLN GLU GLN ILE GLU SEQRES 19 A 249 ALA LEU LEU GLU SER SER LEU ARG GLN ALA GLN GLN ASN SEQRES 20 A 249 MET ASP SEQRES 1 B 302 GLY GLU PHE ALA THR SER ARG TYR GLU PRO VAL ALA GLU SEQRES 2 B 302 ILE GLY VAL GLY ALA TYR GLY THR VAL TYR LYS ALA ARG SEQRES 3 B 302 ASP PRO HIS SER GLY HIS PHE VAL ALA LEU LYS SER VAL SEQRES 4 B 302 ARG VAL PRO ASN GLY GLU GLU GLY LEU PRO ILE SER THR SEQRES 5 B 302 VAL ARG GLU VAL ALA LEU LEU ARG ARG LEU GLU ALA PHE SEQRES 6 B 302 GLU HIS PRO ASN VAL VAL ARG LEU MET ASP VAL CYS ALA SEQRES 7 B 302 THR SER ARG THR ASP ARG GLU ILE LYS VAL THR LEU VAL SEQRES 8 B 302 PHE GLU HIS VAL ASP GLN ASP LEU ARG THR TYR LEU ASP SEQRES 9 B 302 LYS ALA PRO PRO PRO GLY LEU PRO ALA GLU THR ILE LYS SEQRES 10 B 302 ASP LEU MET ARG GLN PHE LEU ARG GLY LEU ASP PHE LEU SEQRES 11 B 302 HIS ALA ASN CYS ILE VAL HIS ARG ASP LEU LYS PRO GLU SEQRES 12 B 302 ASN ILE LEU VAL THR SER GLY GLY THR VAL LYS LEU ALA SEQRES 13 B 302 ASP PHE GLY LEU ALA ARG ILE TYR SER TYR GLN MET ALA SEQRES 14 B 302 LEU THR PRO VAL VAL VAL THR LEU TRP TYR ARG ALA PRO SEQRES 15 B 302 GLU VAL LEU LEU GLN SER THR TYR ALA THR PRO VAL ASP SEQRES 16 B 302 MET TRP SER VAL GLY CYS ILE PHE ALA GLU MET PHE ARG SEQRES 17 B 302 ARG LYS PRO LEU PHE CYS GLY ASN SER GLU ALA ASP GLN SEQRES 18 B 302 LEU GLY LYS ILE PHE ASP LEU ILE GLY LEU PRO PRO GLU SEQRES 19 B 302 ASP ASP TRP PRO ARG ASP VAL SER LEU PRO ARG GLY ALA SEQRES 20 B 302 PHE PRO PRO ARG GLY PRO ARG PRO VAL GLN SER VAL VAL SEQRES 21 B 302 PRO GLU MET GLU GLU SER GLY ALA GLN LEU LEU LEU GLU SEQRES 22 B 302 MET LEU THR PHE ASN PRO HIS LYS ARG ILE SER ALA PHE SEQRES 23 B 302 ARG ALA LEU GLN HIS SER TYR LEU HIS LYS ASP GLU GLY SEQRES 24 B 302 ASN PRO GLU SEQRES 1 C 72 GLY GLU PHE LYS PRO SER ALA CYS ARG ASN LEU PHE GLY SEQRES 2 C 72 PRO VAL ASP HIS GLU GLU LEU THR ARG ASP LEU GLU LYS SEQRES 3 C 72 HIS CYS ARG ASP MET GLU GLU ALA SER GLN ARG LYS TRP SEQRES 4 C 72 ASN PHE ASP PHE GLN ASN HIS LYS PRO LEU GLU GLY LYS SEQRES 5 C 72 TYR GLU TRP GLN GLU VAL GLU LYS GLY SER LEU PRO GLU SEQRES 6 C 72 PHE TYR TYR ARG PRO PRO ARG HET MG B 401 1 HET MG B 402 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *194(H2 O) HELIX 1 AA1 ASP A 19 GLU A 35 1 17 HELIX 2 AA2 SER A 43 VAL A 48 1 6 HELIX 3 AA3 LEU A 53 GLN A 71 1 19 HELIX 4 AA4 GLU A 76 SER A 90 1 15 HELIX 5 AA5 LYS A 95 SER A 97 5 3 HELIX 6 AA6 ARG A 98 GLU A 115 1 18 HELIX 7 AA7 THR A 120 THR A 128 1 9 HELIX 8 AA8 ARG A 133 LEU A 148 1 16 HELIX 9 AA9 THR A 156 LYS A 167 1 12 HELIX 10 AB1 ALA A 171 THR A 191 1 21 HELIX 11 AB2 VAL A 193 ASN A 198 1 6 HELIX 12 AB3 PRO A 199 VAL A 212 1 14 HELIX 13 AB4 GLN A 213 LEU A 217 5 5 HELIX 14 AB5 SER A 225 LYS A 238 1 14 HELIX 15 AB6 ASP A 240 ASN A 265 1 26 HELIX 16 AB7 PRO B 47 GLU B 64 1 18 HELIX 17 AB8 ASP B 96 LYS B 103 1 8 HELIX 18 AB9 PRO B 110 ASN B 131 1 22 HELIX 19 AC1 ALA B 179 LEU B 184 1 6 HELIX 20 AC2 THR B 190 ARG B 207 1 18 HELIX 21 AC3 SER B 215 GLY B 228 1 14 HELIX 22 AC4 PRO B 231 TRP B 235 5 5 HELIX 23 AC5 PRO B 242 PHE B 246 5 5 HELIX 24 AC6 PRO B 253 VAL B 257 5 5 HELIX 25 AC7 GLU B 262 LEU B 273 1 12 HELIX 26 AC8 SER B 282 GLN B 288 1 7 HELIX 27 AC9 HIS B 289 HIS B 293 5 5 HELIX 28 AD1 ASP C 37 ASN C 61 1 25 SHEET 1 AA1 5 LEU B 71 THR B 77 0 SHEET 2 AA1 5 ILE B 84 HIS B 92 -1 O THR B 87 N CYS B 75 SHEET 3 AA1 5 PHE B 31 VAL B 39 -1 N ALA B 33 O PHE B 90 SHEET 4 AA1 5 TYR B 21 ARG B 24 -1 N ALA B 23 O VAL B 32 SHEET 5 AA1 5 GLN C 77 GLU C 78 -1 O GLN C 77 N LYS B 22 SHEET 1 AA2 2 ILE B 143 VAL B 145 0 SHEET 2 AA2 2 VAL B 151 LEU B 153 -1 O LYS B 152 N LEU B 144 SHEET 1 AA3 2 PHE C 62 ASP C 63 0 SHEET 2 AA3 2 LYS C 68 PRO C 69 -1 O LYS C 68 N ASP C 63 LINK NE2 HIS B 135 MG MG B 401 1555 1555 2.83 LINK N ALA B 154 MG MG B 401 1555 1555 2.57 LINK N ASP B 155 MG MG B 401 1555 1555 1.94 SITE 1 AC1 5 HIS B 135 ASN B 142 ALA B 154 ASP B 155 SITE 2 AC1 5 PHE B 156 SITE 1 AC2 3 GLY B 42 GLU B 44 GLY B 45 CRYST1 62.410 67.490 187.280 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005340 0.00000