PDB Short entry for 6PGV HEADER HYDROLASE 24-JUN-19 6PGV TITLE HUMAN JOSEPHIN-2 IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: JOSEPHIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: JOSEPHIN DOMAIN-CONTAINING PROTEIN 2; COMPND 5 EC: 3.4.19.12; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLYUBIQUITIN-B; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JOSD2, SBBI54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETHSUL-JOS2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DEUBIQUITINATING ENZYME, JOSEPHIN, UBIQUITIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.GRASTY,S.D.WEEKS,P.J.LOLL REVDAT 2 18-DEC-19 6PGV 1 REMARK REVDAT 1 23-OCT-19 6PGV 0 JRNL AUTH K.C.GRASTY,S.D.WEEKS,P.J.LOLL JRNL TITL STRUCTURAL INSIGHTS INTO THE ACTIVITY AND REGULATION OF JRNL TITL 2 HUMAN JOSEPHIN-2 JRNL REF J.STRUCT.BIOL. V. 3 00011 2019 JRNL REFN ESSN 1095-8657 JRNL DOI 10.1016/J.YJSBX.2019.100011 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.580 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8158 - 4.5836 1.00 2871 119 0.1777 0.2212 REMARK 3 2 4.5836 - 3.6456 0.99 2610 144 0.1677 0.1776 REMARK 3 3 3.6456 - 3.1869 1.00 2764 154 0.2089 0.2361 REMARK 3 4 3.1869 - 2.8965 1.00 2826 158 0.2297 0.2218 REMARK 3 5 2.8965 - 2.6894 1.00 2838 122 0.2382 0.2839 REMARK 3 6 2.6894 - 2.5312 1.00 2875 141 0.2259 0.2377 REMARK 3 7 2.5312 - 2.4047 1.00 2803 150 0.2478 0.2798 REMARK 3 8 2.4047 - 2.3001 0.98 2771 146 0.2729 0.3616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1832 REMARK 3 ANGLE : 0.498 2478 REMARK 3 CHIRALITY : 0.040 287 REMARK 3 PLANARITY : 0.003 319 REMARK 3 DIHEDRAL : 10.455 1119 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 13:45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1703 41.3088 -8.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.7928 T22: 0.6552 REMARK 3 T33: 0.4825 T12: -0.0233 REMARK 3 T13: -0.0442 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: -1.8481 L22: -2.4837 REMARK 3 L33: 6.6914 L12: 1.3053 REMARK 3 L13: -5.1400 L23: -2.7867 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.5684 S13: 0.1666 REMARK 3 S21: -0.2287 S22: 0.0022 S23: 0.0594 REMARK 3 S31: -1.2391 S32: -0.5319 S33: -0.1977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 46:68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8863 47.8644 -3.0673 REMARK 3 T TENSOR REMARK 3 T11: 1.3594 T22: 0.4908 REMARK 3 T33: -0.0292 T12: -0.1591 REMARK 3 T13: 0.1043 T23: 0.1621 REMARK 3 L TENSOR REMARK 3 L11: 7.8562 L22: 3.2750 REMARK 3 L33: 8.7630 L12: -5.0991 REMARK 3 L13: 4.4748 L23: -3.4707 REMARK 3 S TENSOR REMARK 3 S11: -1.3676 S12: 0.0235 S13: 2.9160 REMARK 3 S21: -1.1443 S22: -0.0188 S23: -1.6713 REMARK 3 S31: -1.7568 S32: 1.7852 S33: -0.3372 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 69:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8537 31.3146 6.2334 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.4161 REMARK 3 T33: 0.4338 T12: 0.0498 REMARK 3 T13: 0.1205 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.4631 L22: 3.0847 REMARK 3 L33: 6.0117 L12: -1.0453 REMARK 3 L13: 1.1468 L23: 1.3187 REMARK 3 S TENSOR REMARK 3 S11: -0.2156 S12: 0.0581 S13: -0.6210 REMARK 3 S21: -0.2766 S22: 0.0006 S23: 0.0257 REMARK 3 S31: 0.4198 S32: 0.8075 S33: 0.1770 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 122:167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9887 24.4728 -1.0239 REMARK 3 T TENSOR REMARK 3 T11: 0.6362 T22: 0.3815 REMARK 3 T33: 0.8361 T12: 0.0161 REMARK 3 T13: 0.0926 T23: -0.1253 REMARK 3 L TENSOR REMARK 3 L11: 5.8231 L22: 4.5592 REMARK 3 L33: 7.2486 L12: 0.3875 REMARK 3 L13: 2.2506 L23: 1.0934 REMARK 3 S TENSOR REMARK 3 S11: -0.1501 S12: 0.6132 S13: -1.5855 REMARK 3 S21: -0.2813 S22: -0.1056 S23: 0.2435 REMARK 3 S31: 1.1302 S32: -0.0898 S33: 0.1516 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 168:186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5252 31.0830 13.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.5843 REMARK 3 T33: 0.4846 T12: 0.0719 REMARK 3 T13: 0.0078 T23: 0.1439 REMARK 3 L TENSOR REMARK 3 L11: 6.5302 L22: 5.2520 REMARK 3 L33: 3.4122 L12: -0.9088 REMARK 3 L13: 1.5857 L23: -1.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: -1.0295 S13: -0.3063 REMARK 3 S21: 0.4331 S22: 0.1866 S23: -0.6854 REMARK 3 S31: -0.0563 S32: 0.2264 S33: 0.0729 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2943 38.5287 9.3698 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.9696 REMARK 3 T33: 0.5285 T12: 0.1138 REMARK 3 T13: 0.0146 T23: 0.2399 REMARK 3 L TENSOR REMARK 3 L11: 6.3896 L22: 8.1010 REMARK 3 L33: 3.9798 L12: 1.5288 REMARK 3 L13: 2.8438 L23: -1.8952 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: 0.4116 S13: 0.3383 REMARK 3 S21: 0.3860 S22: -0.8367 S23: -0.6238 REMARK 3 S31: 0.0181 S32: 1.5920 S33: 0.5034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 50:75 OR RESID 101:101 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4635 42.1801 5.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 1.5321 REMARK 3 T33: 0.7857 T12: -0.0177 REMARK 3 T13: -0.0424 T23: 0.3703 REMARK 3 L TENSOR REMARK 3 L11: 2.0283 L22: 1.8227 REMARK 3 L33: 2.5927 L12: 1.3058 REMARK 3 L13: 0.9506 L23: -2.9479 REMARK 3 S TENSOR REMARK 3 S11: -0.8158 S12: 2.0007 S13: 1.1570 REMARK 3 S21: 0.1950 S22: -0.8253 S23: -0.9530 REMARK 3 S31: -0.2510 S32: 1.9965 S33: 0.1622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900, 0.9787, 0.9792, 0.9700, REMARK 200 1.0053, 1.0089 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 26, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 77.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 81.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 46.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX (1.14_3260) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 0.2 M REMARK 280 CACL2, 22.5% (W/V) PEG 6000; MICROBATCH UNDER AL'S OIL, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.46667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.10000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.83333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.36667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.73333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.46667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.83333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.10000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.36667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 52 REMARK 465 ASP A 53 REMARK 465 SER A 54 REMARK 465 ARG A 55 REMARK 465 LEU A 56 REMARK 465 ASN A 57 REMARK 465 PRO A 58 REMARK 465 HIS A 59 REMARK 465 ARG A 60 REMARK 465 SER A 61 REMARK 465 LEU A 62 REMARK 465 LEU A 63 REMARK 465 GLY A 64 REMARK 465 VAL A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 465 LEU A 116 REMARK 465 LEU A 117 REMARK 465 SER A 118 REMARK 465 LEU A 119 REMARK 465 PRO A 120 REMARK 465 LEU A 121 REMARK 465 THR A 187 REMARK 465 ASP A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 141.80 -170.14 REMARK 500 ASN A 67 70.22 -115.88 REMARK 500 LEU A 139 31.74 -96.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NEH B 101 DBREF 6PGV A 2 188 UNP Q8TAC2 JOS2_HUMAN 2 188 DBREF 6PGV B 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 6PGV MSE A 1 UNP Q8TAC2 INITIATING METHIONINE SEQRES 1 A 188 MSE SER GLN ALA PRO GLY ALA GLN PRO SER PRO PRO THR SEQRES 2 A 188 VAL TYR HIS GLU ARG GLN ARG LEU GLU LEU CYS ALA VAL SEQRES 3 A 188 HIS ALA LEU ASN ASN VAL LEU GLN GLN GLN LEU PHE SER SEQRES 4 A 188 GLN GLU ALA ALA ASP GLU ILE CYS LYS ARG LEU ALA PRO SEQRES 5 A 188 ASP SER ARG LEU ASN PRO HIS ARG SER LEU LEU GLY THR SEQRES 6 A 188 GLY ASN TYR ASP VAL ASN VAL ILE MSE ALA ALA LEU GLN SEQRES 7 A 188 GLY LEU GLY LEU ALA ALA VAL TRP TRP ASP ARG ARG ARG SEQRES 8 A 188 PRO LEU SER GLN LEU ALA LEU PRO GLN VAL LEU GLY LEU SEQRES 9 A 188 ILE LEU ASN LEU PRO SER PRO VAL SER LEU GLY LEU LEU SEQRES 10 A 188 SER LEU PRO LEU ARG ARG ARG HIS TRP VAL ALA LEU ARG SEQRES 11 A 188 GLN VAL ASP GLY VAL TYR TYR ASN LEU ASP SER LYS LEU SEQRES 12 A 188 ARG ALA PRO GLU ALA LEU GLY ASP GLU ASP GLY VAL ARG SEQRES 13 A 188 ALA PHE LEU ALA ALA ALA LEU ALA GLN GLY LEU CYS GLU SEQRES 14 A 188 VAL LEU LEU VAL VAL THR LYS GLU VAL GLU GLU LYS GLY SEQRES 15 A 188 SER TRP LEU ARG THR ASP SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY MODRES 6PGV MSE A 74 MET MODIFIED RESIDUE HET MSE A 74 8 HET NEH B 101 3 HETNAM MSE SELENOMETHIONINE HETNAM NEH ETHANAMINE FORMUL 1 MSE C5 H11 N O2 SE FORMUL 3 NEH C2 H7 N FORMUL 4 HOH *24(H2 O) HELIX 1 AA1 LEU A 23 GLN A 34 1 12 HELIX 2 AA2 SER A 39 LEU A 50 1 12 HELIX 3 AA3 ASP A 69 GLY A 79 1 11 HELIX 4 AA4 PRO A 92 LEU A 96 5 5 HELIX 5 AA5 ALA A 97 VAL A 101 5 5 HELIX 6 AA6 ASP A 151 GLY A 166 1 16 HELIX 7 AA7 LYS A 176 GLY A 182 1 7 HELIX 8 AA8 THR B 22 GLY B 35 1 14 HELIX 9 AA9 PRO B 37 ASP B 39 5 3 SHEET 1 AA1 6 LEU A 82 TRP A 86 0 SHEET 2 AA1 6 GLU A 169 THR A 175 -1 O LEU A 172 N VAL A 85 SHEET 3 AA1 6 GLY A 103 PRO A 109 -1 N GLY A 103 O VAL A 173 SHEET 4 AA1 6 ARG A 124 VAL A 132 -1 O VAL A 127 N LEU A 106 SHEET 5 AA1 6 VAL A 135 ASN A 138 -1 O VAL A 135 N VAL A 132 SHEET 6 AA1 6 GLU A 147 GLY A 150 -1 O LEU A 149 N TYR A 136 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 24 CB NEH B 101 1555 1555 1.83 LINK C ILE A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N ALA A 75 1555 1555 1.34 LINK C GLY B 75 N NEH B 101 1555 1555 1.33 SITE 1 AC1 4 CYS A 24 ASN A 67 ARG A 124 GLY B 75 CRYST1 102.120 102.120 92.200 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009792 0.005654 0.000000 0.00000 SCALE2 0.000000 0.011307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010846 0.00000