PDB Short entry for 6PMO HEADER RNA 02-JUL-19 6PMO TITLE CO-CRYSTAL STRUCTURE OF THE GEOBACILLUS KAUSTOPHILUS GLYQ T-BOX TITLE 2 RIBOSWITCH DISCRIMINATOR DOMAIN IN COMPLEX WITH TRNA-GLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-GLY; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-BOX RIBOSWITCH DISCRIMINATOR; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: IN VITRO TRANSCRIBED, UNMODIFIED RNA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 4 ORGANISM_TAXID: 1462; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 8 ORGANISM_TAXID: 1462 KEYWDS RIBOSWITCH, TRNA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR S.LI,J.ZHANG REVDAT 5 13-MAR-24 6PMO 1 LINK REVDAT 4 25-DEC-19 6PMO 1 REMARK REVDAT 3 18-DEC-19 6PMO 1 JRNL REVDAT 2 04-DEC-19 6PMO 1 JRNL REVDAT 1 20-NOV-19 6PMO 0 JRNL AUTH S.LI,Z.SU,J.LEHMANN,V.STAMATOPOULOU,N.GIARIMOGLOU, JRNL AUTH 2 F.E.HENDERSON,L.FAN,G.D.PINTILIE,K.ZHANG,M.CHEN,S.J.LUDTKE, JRNL AUTH 3 Y.X.WANG,C.STATHOPOULOS,W.CHIU,J.ZHANG JRNL TITL STRUCTURAL BASIS OF AMINO ACID SURVEILLANCE BY HIGHER-ORDER JRNL TITL 2 TRNA-MRNA INTERACTIONS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 1094 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31740854 JRNL DOI 10.1038/S41594-019-0326-7 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.926 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9783 - 5.5204 1.00 1361 151 0.2240 0.2689 REMARK 3 2 5.5204 - 4.3844 1.00 1294 143 0.1871 0.2196 REMARK 3 3 4.3844 - 3.8310 1.00 1288 143 0.1842 0.2526 REMARK 3 4 3.8310 - 3.4811 1.00 1255 137 0.2132 0.2455 REMARK 3 5 3.4811 - 3.2317 1.00 1265 142 0.2328 0.2937 REMARK 3 6 3.2317 - 3.0413 1.00 1254 141 0.2438 0.3107 REMARK 3 7 3.0413 - 2.8891 1.00 1269 141 0.3332 0.3969 REMARK 3 8 2.8891 - 2.7634 1.00 1244 138 0.3894 0.4616 REMARK 3 9 2.7634 - 2.6600 0.98 1231 127 0.3715 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.481 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.072 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3078 REMARK 3 ANGLE : 0.802 4790 REMARK 3 CHIRALITY : 0.035 647 REMARK 3 PLANARITY : 0.005 127 REMARK 3 DIHEDRAL : 15.383 1542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6748 0.4275 -25.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.5445 T22: 0.5035 REMARK 3 T33: 1.2634 T12: -0.0213 REMARK 3 T13: -0.1442 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.7075 L22: 6.7479 REMARK 3 L33: 5.4164 L12: 3.5719 REMARK 3 L13: -2.8388 L23: -4.4434 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.1816 S13: -1.2392 REMARK 3 S21: 0.9130 S22: -0.4554 S23: -1.5863 REMARK 3 S31: -0.0313 S32: 0.1288 S33: 0.4993 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8835 12.5694 -29.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.3981 T22: 0.7663 REMARK 3 T33: 0.7548 T12: -0.0606 REMARK 3 T13: 0.0179 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.6273 L22: 4.0446 REMARK 3 L33: 7.3844 L12: -0.6097 REMARK 3 L13: -0.0036 L23: 5.2188 REMARK 3 S TENSOR REMARK 3 S11: -0.5143 S12: 0.1728 S13: -0.3514 REMARK 3 S21: -0.2498 S22: 0.5809 S23: 0.4239 REMARK 3 S31: -0.2827 S32: 0.5457 S33: -0.0061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5636 10.8535 -47.0639 REMARK 3 T TENSOR REMARK 3 T11: 0.4998 T22: 1.2783 REMARK 3 T33: 0.7711 T12: -0.0197 REMARK 3 T13: 0.0261 T23: -0.1682 REMARK 3 L TENSOR REMARK 3 L11: 1.7656 L22: 6.6926 REMARK 3 L33: 7.2051 L12: -3.4568 REMARK 3 L13: -0.0276 L23: -1.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.6178 S12: 1.6778 S13: -0.2831 REMARK 3 S21: -1.0622 S22: -0.5887 S23: 0.0387 REMARK 3 S31: -0.1253 S32: -1.3334 S33: 0.0351 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1624 3.4720 -16.8543 REMARK 3 T TENSOR REMARK 3 T11: 0.6297 T22: 0.5861 REMARK 3 T33: 0.7090 T12: 0.0868 REMARK 3 T13: 0.0714 T23: 0.1897 REMARK 3 L TENSOR REMARK 3 L11: 1.3559 L22: 7.0286 REMARK 3 L33: 1.6042 L12: 4.1163 REMARK 3 L13: -0.7836 L23: -2.6961 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: 0.0794 S13: -0.1802 REMARK 3 S21: 0.6788 S22: 0.2822 S23: 0.2285 REMARK 3 S31: 0.0351 S32: -0.4556 S33: -0.4488 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3174 -18.7446 -20.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.8233 T22: 0.8241 REMARK 3 T33: 1.0281 T12: -0.0703 REMARK 3 T13: 0.1397 T23: 0.4619 REMARK 3 L TENSOR REMARK 3 L11: 8.5667 L22: 5.1270 REMARK 3 L33: 1.8852 L12: 0.0688 REMARK 3 L13: 1.8773 L23: 2.1119 REMARK 3 S TENSOR REMARK 3 S11: -1.2532 S12: 0.0402 S13: 0.6025 REMARK 3 S21: -0.9245 S22: 0.5648 S23: 0.5171 REMARK 3 S31: -0.0181 S32: 0.5224 S33: 0.6233 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1210 -32.1395 -22.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.4886 T22: 0.8033 REMARK 3 T33: 0.8029 T12: -0.0754 REMARK 3 T13: 0.1895 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 0.2491 L22: 1.9235 REMARK 3 L33: 3.3614 L12: -0.4891 REMARK 3 L13: -0.0624 L23: 1.7486 REMARK 3 S TENSOR REMARK 3 S11: -0.2164 S12: 0.7146 S13: 0.0486 REMARK 3 S21: -0.0488 S22: -0.6414 S23: 1.6300 REMARK 3 S31: 0.3411 S32: -0.5975 S33: 1.1426 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6705 -29.7138 -26.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.9569 T22: 1.4332 REMARK 3 T33: 1.6104 T12: 0.2475 REMARK 3 T13: 0.0427 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 3.1918 L22: 4.9622 REMARK 3 L33: 5.0851 L12: -1.3372 REMARK 3 L13: -1.3052 L23: 0.5468 REMARK 3 S TENSOR REMARK 3 S11: 0.6850 S12: 0.6904 S13: 0.5377 REMARK 3 S21: -0.4659 S22: -0.2937 S23: 1.0449 REMARK 3 S31: -0.8637 S32: -1.4642 S33: -0.3174 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8453 -38.5790 -15.0171 REMARK 3 T TENSOR REMARK 3 T11: 0.8234 T22: 0.5658 REMARK 3 T33: 0.6671 T12: 0.0172 REMARK 3 T13: 0.0986 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.8197 L22: 6.1496 REMARK 3 L33: 5.1186 L12: 1.5521 REMARK 3 L13: -0.5358 L23: 1.4296 REMARK 3 S TENSOR REMARK 3 S11: -1.0839 S12: 0.2257 S13: -0.0339 REMARK 3 S21: -0.0855 S22: 0.3257 S23: 1.7261 REMARK 3 S31: -0.0839 S32: -0.5864 S33: 0.4016 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3735 -24.4213 -11.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.8269 T22: 0.5375 REMARK 3 T33: 0.5102 T12: -0.0036 REMARK 3 T13: 0.1051 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.9456 L22: 4.0165 REMARK 3 L33: 1.3514 L12: 0.4993 REMARK 3 L13: 1.3798 L23: 0.7525 REMARK 3 S TENSOR REMARK 3 S11: 0.1701 S12: -0.3693 S13: 0.5985 REMARK 3 S21: 0.9333 S22: 0.0261 S23: 0.1388 REMARK 3 S31: -0.5083 S32: 0.2879 S33: -0.2025 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6282 -24.8896 4.5462 REMARK 3 T TENSOR REMARK 3 T11: 1.7431 T22: 1.4476 REMARK 3 T33: 0.4828 T12: -0.3829 REMARK 3 T13: 0.6922 T23: -0.6981 REMARK 3 L TENSOR REMARK 3 L11: 5.0564 L22: 1.3644 REMARK 3 L33: 6.1299 L12: -1.9640 REMARK 3 L13: -4.8550 L23: 1.0165 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -2.4205 S13: 1.3874 REMARK 3 S21: 1.5401 S22: 0.0079 S23: 1.0419 REMARK 3 S31: 0.2598 S32: -1.4965 S33: 0.3595 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9044 -31.4266 -18.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.5236 T22: 0.5271 REMARK 3 T33: 0.4920 T12: 0.0055 REMARK 3 T13: 0.0578 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 4.9869 L22: 5.6443 REMARK 3 L33: 2.3349 L12: 0.4402 REMARK 3 L13: 1.1995 L23: -2.7521 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: 0.7937 S13: -0.4853 REMARK 3 S21: 0.1092 S22: 0.2559 S23: -0.3177 REMARK 3 S31: 0.1439 S32: -0.2452 S33: -0.1461 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : MD2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.657 REMARK 200 RESOLUTION RANGE LOW (A) : 34.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06249 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR PRISM-SHAPED CRYSTALS GREW IN 2-7 DAYS TO REMARK 200 MAXIMUM DIMENSIONS OF 300 X 300 X 50 MICROMETER3. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MORPHEUS BUFFER SYSTEM 2 PH 7.5 REMARK 280 (SODIUM HEPES; MOPS (ACID)), 0.09 M HALOGENS (NAF; NABR; NAI), REMARK 280 10% W/V PEG 20000, AND 20% V/V PEG 500 MONOMETHYL ETHER (MME), REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.01150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.01150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.42550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.95650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.42550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.95650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.01150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.42550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.95650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.01150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.42550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.95650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U B 32 REMARK 465 U B 33 REMARK 465 G B 34 REMARK 465 C B 35 REMARK 465 C B 36 REMARK 465 G A 126 REMARK 465 A A 127 REMARK 465 U A 143 REMARK 465 A A 152 REMARK 465 A A 176 REMARK 465 C A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 19 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 19 C6 REMARK 470 U B 47 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 47 C6 REMARK 470 G A 132 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G A 132 C2 N2 N3 C4 REMARK 470 A A 153 P OP1 OP2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 76 OP1 REMARK 620 2 G A 167 O6 141.9 REMARK 620 3 U A 185 O4 67.6 79.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6POM RELATED DB: PDB DBREF 6PMO B 1 76 PDB 6PMO 6PMO 1 76 DBREF 6PMO A 126 191 PDB 6PMO 6PMO 126 191 SEQRES 1 B 75 G C G G A A G U A G U U C SEQRES 2 B 75 A G U G G U A G A A C A C SEQRES 3 B 75 C A C C U U G C C A A G G SEQRES 4 B 75 U G G G G G U C G C G G G SEQRES 5 B 75 U U C G A A U C C C G U C SEQRES 6 B 75 U U C C G C U C C A SEQRES 1 A 66 G A A A G U G G G U G C G SEQRES 2 A 66 C G U U U G G C G C A U C SEQRES 3 A 66 A A C U C G G G U G G A A SEQRES 4 A 66 C C G C G G G A G C U A C SEQRES 5 A 66 G C U C U C G U C C C G A SEQRES 6 A 66 G HET IR B 101 1 HET IR B 102 1 HET IR B 103 1 HET IR B 104 1 HET IR B 105 1 HET IR B 106 1 HET IR B 107 1 HET IR B 108 1 HET IR B 109 1 HET MG B 110 1 HET MG B 111 1 HET IR B 112 1 HET IR A 201 1 HET IR A 202 1 HET MG A 203 1 HET MG A 204 1 HET IR A 205 1 HETNAM IR IRIDIUM ION HETNAM MG MAGNESIUM ION FORMUL 3 IR 13(IR 4+) FORMUL 12 MG 4(MG 2+) FORMUL 20 HOH *18(H2 O) LINK OP1 C B 48 MG MG B 111 1555 1555 1.80 LINK OP2 C B 56 IR IR B 112 1555 1555 2.36 LINK OP1 A B 76 MG MG A 203 1555 1555 2.89 LINK MG MG B 110 O HOH B 211 1555 1555 2.37 LINK O6 G A 167 MG MG A 203 1555 1555 2.98 LINK O4 U A 185 MG MG A 203 1555 1555 2.78 SITE 1 AC1 2 G B 49 U B 65 SITE 1 AC2 1 G B 17 SITE 1 AC3 1 G B 15 SITE 1 AC4 1 G B 52 SITE 1 AC5 1 HOH B 211 SITE 1 AC6 2 C B 48 C B 50 SITE 1 AC7 2 U B 55 C B 56 SITE 1 AC8 1 C A 186 SITE 1 AC9 1 G A 158 SITE 1 AD1 5 C A 166 G A 167 G A 184 U A 185 SITE 2 AD1 5 A B 76 SITE 1 AD2 2 G A 161 G A 162 CRYST1 44.851 139.913 136.023 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007352 0.00000