PDB Short entry for 6POJ HEADER TRANSPORT PROTEIN 04-JUL-19 6POJ TITLE STRUCTURAL REFINEMENT OF AQUAPORIN 1 VIA SSNMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AQP-1,AQUAPORIN-CHIP,URINE WATER CHANNEL,WATER CHANNEL COMPND 5 PROTEIN FOR RED BLOOD CELLS AND KIDNEY PROXIMAL TUBULE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AQP1, CHIP28; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SMD1168H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZB KEYWDS TRANSPORT PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR D.A.DINGWELL,L.S.BROWN,V.LADIZHANSKY REVDAT 3 14-JUN-23 6POJ 1 REMARK REVDAT 2 08-JAN-20 6POJ 1 REMARK REVDAT 1 02-OCT-19 6POJ 0 JRNL AUTH D.A.DINGWELL,L.S.BROWN,V.LADIZHANSKY JRNL TITL STRUCTURE OF THE FUNCTIONALLY IMPORTANT EXTRACELLULAR LOOP C JRNL TITL 2 OF HUMAN AQUAPORIN 1 OBTAINED BY SOLID-STATE NMR UNDER JRNL TITL 3 NEARLY PHYSIOLOGICAL CONDITIONS. JRNL REF J.PHYS.CHEM.B V. 123 7700 2019 JRNL REFN ISSN 1089-5647 JRNL PMID 31411472 JRNL DOI 10.1021/ACS.JPCB.9B06430 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.48 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6POJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242667. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 W/V [U-13C; U-15N] AQUAPORIN REMARK 210 1, NMR BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HBR2 3D NCOCX REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CARA, X-PLOR REMARK 210 NIH 2.48 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 62 H SER A 66 1.57 REMARK 500 O GLY A 138 H GLU A 142 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 -42.08 -135.67 REMARK 500 1 LYS A 7 -64.85 72.62 REMARK 500 1 LEU A 9 -179.57 53.48 REMARK 500 1 GLN A 43 -164.86 -125.67 REMARK 500 1 LEU A 85 -69.95 70.05 REMARK 500 1 SER A 86 51.34 -176.91 REMARK 500 1 GLN A 88 86.68 -171.71 REMARK 500 1 ILE A 89 -70.17 -91.93 REMARK 500 1 ILE A 91 134.95 65.15 REMARK 500 1 SER A 123 58.27 -146.49 REMARK 500 1 ASN A 127 15.61 54.85 REMARK 500 1 ARG A 160 174.27 -52.11 REMARK 500 1 ARG A 162 -58.18 -154.44 REMARK 500 1 PHE A 206 -143.75 -91.36 REMARK 500 1 ASP A 228 68.71 -166.35 REMARK 500 1 ILE A 230 98.40 58.25 REMARK 500 1 ALA A 232 68.67 -159.83 REMARK 500 1 PRO A 233 106.39 -47.52 REMARK 500 1 ARG A 234 118.02 64.79 REMARK 500 1 ASP A 237 97.82 59.33 REMARK 500 1 THR A 239 65.51 -162.05 REMARK 500 1 ASP A 240 95.84 55.13 REMARK 500 1 ARG A 241 -176.38 55.64 REMARK 500 1 VAL A 242 26.74 -141.36 REMARK 500 1 GLU A 251 -66.52 -97.79 REMARK 500 1 GLU A 252 76.61 -173.61 REMARK 500 1 ASP A 256 54.08 -141.49 REMARK 500 1 ALA A 257 173.05 -53.85 REMARK 500 1 ASP A 259 78.60 56.72 REMARK 500 1 LYS A 267 106.55 -46.92 REMARK 500 1 LYS A 269 -34.57 -174.84 REMARK 500 1 ALA A 270 105.09 64.80 REMARK 500 1 LEU A 271 101.41 62.35 REMARK 500 1 GLN A 273 -50.90 -124.22 REMARK 500 1 LYS A 274 -51.27 -157.52 REMARK 500 1 LEU A 275 -82.21 64.83 REMARK 500 1 ILE A 276 -6.91 75.36 REMARK 500 1 ASP A 280 -75.75 68.34 REMARK 500 1 ASN A 282 163.03 63.66 REMARK 500 1 HIS A 289 95.32 55.97 REMARK 500 1 HIS A 290 -76.86 -134.47 REMARK 500 2 SER A 3 118.75 -166.24 REMARK 500 2 LYS A 7 93.32 53.69 REMARK 500 2 LEU A 9 -79.42 -73.19 REMARK 500 2 PHE A 10 -84.31 -141.79 REMARK 500 2 TRP A 11 -54.93 73.74 REMARK 500 2 GLN A 43 -7.89 74.63 REMARK 500 2 CYS A 87 -59.90 -169.65 REMARK 500 2 GLN A 88 55.93 -174.74 REMARK 500 2 ILE A 89 146.77 -176.90 REMARK 500 REMARK 500 THIS ENTRY HAS 391 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26805 RELATED DB: BMRB REMARK 900 INCOMPLETE ASSIGNMENTS OF THE SAME PROTEIN REMARK 900 RELATED ID: 30624 RELATED DB: BMRB DBREF 6POJ A 1 269 UNP P29972 AQP1_HUMAN 1 269 SEQADV 6POJ ALA A 270 UNP P29972 EXPRESSION TAG SEQADV 6POJ LEU A 271 UNP P29972 EXPRESSION TAG SEQADV 6POJ GLU A 272 UNP P29972 EXPRESSION TAG SEQADV 6POJ GLN A 273 UNP P29972 EXPRESSION TAG SEQADV 6POJ LYS A 274 UNP P29972 EXPRESSION TAG SEQADV 6POJ LEU A 275 UNP P29972 EXPRESSION TAG SEQADV 6POJ ILE A 276 UNP P29972 EXPRESSION TAG SEQADV 6POJ SER A 277 UNP P29972 EXPRESSION TAG SEQADV 6POJ GLU A 278 UNP P29972 EXPRESSION TAG SEQADV 6POJ GLU A 279 UNP P29972 EXPRESSION TAG SEQADV 6POJ ASP A 280 UNP P29972 EXPRESSION TAG SEQADV 6POJ LEU A 281 UNP P29972 EXPRESSION TAG SEQADV 6POJ ASN A 282 UNP P29972 EXPRESSION TAG SEQADV 6POJ SER A 283 UNP P29972 EXPRESSION TAG SEQADV 6POJ ALA A 284 UNP P29972 EXPRESSION TAG SEQADV 6POJ VAL A 285 UNP P29972 EXPRESSION TAG SEQADV 6POJ ASP A 286 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 287 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 288 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 289 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 290 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 291 UNP P29972 EXPRESSION TAG SEQADV 6POJ HIS A 292 UNP P29972 EXPRESSION TAG SEQRES 1 A 292 MET ALA SER GLU PHE LYS LYS LYS LEU PHE TRP ARG ALA SEQRES 2 A 292 VAL VAL ALA GLU PHE LEU ALA THR THR LEU PHE VAL PHE SEQRES 3 A 292 ILE SER ILE GLY SER ALA LEU GLY PHE LYS TYR PRO VAL SEQRES 4 A 292 GLY ASN ASN GLN THR ALA VAL GLN ASP ASN VAL LYS VAL SEQRES 5 A 292 SER LEU ALA PHE GLY LEU SER ILE ALA THR LEU ALA GLN SEQRES 6 A 292 SER VAL GLY HIS ILE SER GLY ALA HIS LEU ASN PRO ALA SEQRES 7 A 292 VAL THR LEU GLY LEU LEU LEU SER CYS GLN ILE SER ILE SEQRES 8 A 292 PHE ARG ALA LEU MET TYR ILE ILE ALA GLN CYS VAL GLY SEQRES 9 A 292 ALA ILE VAL ALA THR ALA ILE LEU SER GLY ILE THR SER SEQRES 10 A 292 SER LEU THR GLY ASN SER LEU GLY ARG ASN ASP LEU ALA SEQRES 11 A 292 ASP GLY VAL ASN SER GLY GLN GLY LEU GLY ILE GLU ILE SEQRES 12 A 292 ILE GLY THR LEU GLN LEU VAL LEU CYS VAL LEU ALA THR SEQRES 13 A 292 THR ASP ARG ARG ARG ARG ASP LEU GLY GLY SER ALA PRO SEQRES 14 A 292 LEU ALA ILE GLY LEU SER VAL ALA LEU GLY HIS LEU LEU SEQRES 15 A 292 ALA ILE ASP TYR THR GLY CYS GLY ILE ASN PRO ALA ARG SEQRES 16 A 292 SER PHE GLY SER ALA VAL ILE THR HIS ASN PHE SER ASN SEQRES 17 A 292 HIS TRP ILE PHE TRP VAL GLY PRO PHE ILE GLY GLY ALA SEQRES 18 A 292 LEU ALA VAL LEU ILE TYR ASP PHE ILE LEU ALA PRO ARG SEQRES 19 A 292 SER SER ASP LEU THR ASP ARG VAL LYS VAL TRP THR SER SEQRES 20 A 292 GLY GLN VAL GLU GLU TYR ASP LEU ASP ALA ASP ASP ILE SEQRES 21 A 292 ASN SER ARG VAL GLU MET LYS PRO LYS ALA LEU GLU GLN SEQRES 22 A 292 LYS LEU ILE SER GLU GLU ASP LEU ASN SER ALA VAL ASP SEQRES 23 A 292 HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ALA A 13 PHE A 35 1 23 HELIX 2 AA2 ASP A 48 SER A 66 1 19 HELIX 3 AA3 ASN A 76 LEU A 85 1 10 HELIX 4 AA4 PHE A 92 THR A 116 1 25 HELIX 5 AA5 GLN A 137 ASP A 158 1 22 HELIX 6 AA6 SER A 167 GLY A 188 1 22 HELIX 7 AA7 ASN A 192 VAL A 201 1 10 HELIX 8 AA8 PHE A 206 TYR A 227 1 22 CISPEP 1 TYR A 37 PRO A 38 1 0.21 CISPEP 2 TYR A 37 PRO A 38 2 -0.05 CISPEP 3 TYR A 37 PRO A 38 3 -1.00 CISPEP 4 TYR A 37 PRO A 38 4 -0.21 CISPEP 5 TYR A 37 PRO A 38 5 -0.24 CISPEP 6 TYR A 37 PRO A 38 6 -1.23 CISPEP 7 TYR A 37 PRO A 38 7 -0.15 CISPEP 8 TYR A 37 PRO A 38 8 -0.36 CISPEP 9 TYR A 37 PRO A 38 9 0.28 CISPEP 10 TYR A 37 PRO A 38 10 -0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000