PDB Short entry for 6Q1V HEADER LIGASE/DNA 06-AUG-19 6Q1V TITLE HUMAN DNA LIGASE 1 (E592R) BOUND TO AN ADENYLATED, HYDROXYL TERMINATED TITLE 2 DNA NICK COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA LIGASE I,POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 1; COMPND 5 EC: 6.5.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'- COMPND 18 D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, PHOSPHOTRANSFERASE, OB FOLD, DNA BINDING DOMAIN, KEYWDS 2 ADENYLATION DOMAIN, METALLOENZYME, LIGASE, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,R.S.WILLIAMS,P.S.TUMBALE,A.A.RICCIO REVDAT 2 11-OCT-23 6Q1V 1 REMARK REVDAT 1 11-DEC-19 6Q1V 0 JRNL AUTH P.P.TUMBALE,T.J.JURKIW,M.J.SCHELLENBERG,A.A.RICCIO, JRNL AUTH 2 P.J.O'BRIEN,R.S.WILLIAMS JRNL TITL TWO-TIERED ENFORCEMENT OF HIGH-FIDELITY DNA LIGATION. JRNL REF NAT COMMUN V. 10 5431 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31780661 JRNL DOI 10.1038/S41467-019-13478-7 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 72890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3661 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5024 REMARK 3 NUCLEIC ACID ATOMS : 733 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.841 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1X9N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 100 MM LITHIUM ACETATE, REMARK 280 15% (W/V) PEG 3350, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.74300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.64550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.64550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.74300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 902 REMARK 465 ILE A 903 REMARK 465 GLN A 904 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 683 O HOH A 1102 1.50 REMARK 500 H LYS A 747 O HOH A 1103 1.54 REMARK 500 O VAL A 753 HZ1 LYS A 845 1.58 REMARK 500 OD2 ASP A 827 HH12 ARG A 859 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 263 CD PRO A 263 N 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 262 81.64 57.37 REMARK 500 SER A 323 67.50 -153.02 REMARK 500 HIS A 436 -123.49 52.49 REMARK 500 ALA A 455 -147.76 -136.87 REMARK 500 GLU A 559 -120.86 54.52 REMARK 500 ASP A 570 78.87 -105.59 REMARK 500 GLU A 692 -51.05 -132.14 REMARK 500 ARG A 738 115.11 -160.47 REMARK 500 HIS A 740 63.53 -104.43 REMARK 500 ASP A 827 -118.52 50.54 REMARK 500 SER A 839 -54.18 -156.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1455 DISTANCE = 7.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P0C RELATED DB: PDB REMARK 900 CONTAINS WILDYPE PROTEIN BOUND TO THE SAME DNA DBREF 6Q1V A 262 904 UNP P18858 DNLI1_HUMAN 262 904 DBREF 6Q1V B 3 13 PDB 6Q1V 6Q1V 3 13 DBREF 6Q1V C 1 7 PDB 6Q1V 6Q1V 1 7 DBREF 6Q1V D 9 26 PDB 6Q1V 6Q1V 9 26 SEQADV 6Q1V SER A 260 UNP P18858 EXPRESSION TAG SEQADV 6Q1V ASN A 261 UNP P18858 EXPRESSION TAG SEQADV 6Q1V ARG A 592 UNP P18858 GLU 592 ENGINEERED MUTATION SEQRES 1 A 645 SER ASN ASP PRO SER GLY TYR ASN PRO ALA LYS ASN ASN SEQRES 2 A 645 TYR HIS PRO VAL GLU ASP ALA CYS TRP LYS PRO GLY GLN SEQRES 3 A 645 LYS VAL PRO TYR LEU ALA VAL ALA ARG THR PHE GLU LYS SEQRES 4 A 645 ILE GLU GLU VAL SER ALA ARG LEU ARG MET VAL GLU THR SEQRES 5 A 645 LEU SER ASN LEU LEU ARG SER VAL VAL ALA LEU SER PRO SEQRES 6 A 645 PRO ASP LEU LEU PRO VAL LEU TYR LEU SER LEU ASN HIS SEQRES 7 A 645 LEU GLY PRO PRO GLN GLN GLY LEU GLU LEU GLY VAL GLY SEQRES 8 A 645 ASP GLY VAL LEU LEU LYS ALA VAL ALA GLN ALA THR GLY SEQRES 9 A 645 ARG GLN LEU GLU SER VAL ARG ALA GLU ALA ALA GLU LYS SEQRES 10 A 645 GLY ASP VAL GLY LEU VAL ALA GLU ASN SER ARG SER THR SEQRES 11 A 645 GLN ARG LEU MET LEU PRO PRO PRO PRO LEU THR ALA SER SEQRES 12 A 645 GLY VAL PHE SER LYS PHE ARG ASP ILE ALA ARG LEU THR SEQRES 13 A 645 GLY SER ALA SER THR ALA LYS LYS ILE ASP ILE ILE LYS SEQRES 14 A 645 GLY LEU PHE VAL ALA CYS ARG HIS SER GLU ALA ARG PHE SEQRES 15 A 645 ILE ALA ARG SER LEU SER GLY ARG LEU ARG LEU GLY LEU SEQRES 16 A 645 ALA GLU GLN SER VAL LEU ALA ALA LEU SER GLN ALA VAL SEQRES 17 A 645 SER LEU THR PRO PRO GLY GLN GLU PHE PRO PRO ALA MET SEQRES 18 A 645 VAL ASP ALA GLY LYS GLY LYS THR ALA GLU ALA ARG LYS SEQRES 19 A 645 THR TRP LEU GLU GLU GLN GLY MET ILE LEU LYS GLN THR SEQRES 20 A 645 PHE CYS GLU VAL PRO ASP LEU ASP ARG ILE ILE PRO VAL SEQRES 21 A 645 LEU LEU GLU HIS GLY LEU GLU ARG LEU PRO GLU HIS CYS SEQRES 22 A 645 LYS LEU SER PRO GLY ILE PRO LEU LYS PRO MET LEU ALA SEQRES 23 A 645 HIS PRO THR ARG GLY ILE SER GLU VAL LEU LYS ARG PHE SEQRES 24 A 645 GLU GLU ALA ALA PHE THR CYS GLU TYR LYS TYR ASP GLY SEQRES 25 A 645 GLN ARG ALA GLN ILE HIS ALA LEU GLU GLY GLY GLU VAL SEQRES 26 A 645 LYS ILE PHE SER ARG ASN GLN ARG ASP ASN THR GLY LYS SEQRES 27 A 645 TYR PRO ASP ILE ILE SER ARG ILE PRO LYS ILE LYS LEU SEQRES 28 A 645 PRO SER VAL THR SER PHE ILE LEU ASP THR GLU ALA VAL SEQRES 29 A 645 ALA TRP ASP ARG GLU LYS LYS GLN ILE GLN PRO PHE GLN SEQRES 30 A 645 VAL LEU THR THR ARG LYS ARG LYS GLU VAL ASP ALA SER SEQRES 31 A 645 GLU ILE GLN VAL GLN VAL CYS LEU TYR ALA PHE ASP LEU SEQRES 32 A 645 ILE TYR LEU ASN GLY GLU SER LEU VAL ARG GLU PRO LEU SEQRES 33 A 645 SER ARG ARG ARG GLN LEU LEU ARG GLU ASN PHE VAL GLU SEQRES 34 A 645 THR GLU GLY GLU PHE VAL PHE ALA THR SER LEU ASP THR SEQRES 35 A 645 LYS ASP ILE GLU GLN ILE ALA GLU PHE LEU GLU GLN SER SEQRES 36 A 645 VAL LYS ASP SER CYS GLU GLY LEU MET VAL LYS THR LEU SEQRES 37 A 645 ASP VAL ASP ALA THR TYR GLU ILE ALA LYS ARG SER HIS SEQRES 38 A 645 ASN TRP LEU LYS LEU LYS LYS ASP TYR LEU ASP GLY VAL SEQRES 39 A 645 GLY ASP THR LEU ASP LEU VAL VAL ILE GLY ALA TYR LEU SEQRES 40 A 645 GLY ARG GLY LYS ARG ALA GLY ARG TYR GLY GLY PHE LEU SEQRES 41 A 645 LEU ALA SER TYR ASP GLU ASP SER GLU GLU LEU GLN ALA SEQRES 42 A 645 ILE CYS LYS LEU GLY THR GLY PHE SER ASP GLU GLU LEU SEQRES 43 A 645 GLU GLU HIS HIS GLN SER LEU LYS ALA LEU VAL LEU PRO SEQRES 44 A 645 SER PRO ARG PRO TYR VAL ARG ILE ASP GLY ALA VAL ILE SEQRES 45 A 645 PRO ASP HIS TRP LEU ASP PRO SER ALA VAL TRP GLU VAL SEQRES 46 A 645 LYS CYS ALA ASP LEU SER LEU SER PRO ILE TYR PRO ALA SEQRES 47 A 645 ALA ARG GLY LEU VAL ASP SER ASP LYS GLY ILE SER LEU SEQRES 48 A 645 ARG PHE PRO ARG PHE ILE ARG VAL ARG GLU ASP LYS GLN SEQRES 49 A 645 PRO GLU GLN ALA THR THR SER ALA GLN VAL ALA CYS LEU SEQRES 50 A 645 TYR ARG LYS GLN SER GLN ILE GLN SEQRES 1 B 11 DG DC DT DG DA DT DG DC DG DT DC SEQRES 1 C 7 DG DT DC DG DG DA DC SEQRES 1 D 18 DG DT DC DC DG DA DC DG DA DC DG DC DA SEQRES 2 D 18 DT DC DA DG DC HET PEG A1001 17 HET ACT A1002 7 HET AMP C 101 24 HET TRS D 101 20 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 PEG C4 H10 O3 FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 AMP C10 H14 N5 O7 P FORMUL 8 TRS C4 H12 N O3 1+ FORMUL 9 HOH *462(H2 O) HELIX 1 AA1 ASP A 262 TYR A 266 5 5 HELIX 2 AA2 PRO A 288 GLU A 301 1 14 HELIX 3 AA3 ALA A 304 SER A 323 1 20 HELIX 4 AA4 ASP A 326 ASN A 336 1 11 HELIX 5 AA5 PRO A 340 GLY A 344 5 5 HELIX 6 AA6 GLY A 350 GLY A 363 1 14 HELIX 7 AA7 GLN A 365 GLY A 377 1 13 HELIX 8 AA8 ASP A 378 ASN A 385 1 8 HELIX 9 AA9 THR A 400 LEU A 414 1 15 HELIX 10 AB1 ALA A 418 CYS A 434 1 17 HELIX 11 AB2 SER A 437 SER A 447 1 11 HELIX 12 AB3 ALA A 455 THR A 470 1 16 HELIX 13 AB4 THR A 488 VAL A 510 1 23 HELIX 14 AB5 ASP A 512 GLY A 524 1 13 HELIX 15 AB6 ARG A 527 CYS A 532 1 6 HELIX 16 AB7 GLY A 550 GLU A 559 1 10 HELIX 17 AB8 ASN A 594 LYS A 597 5 4 HELIX 18 AB9 TYR A 598 ARG A 604 1 7 HELIX 19 AC1 ARG A 604 LYS A 609 1 6 HELIX 20 AC2 PRO A 634 THR A 639 1 6 HELIX 21 AC3 ASP A 647 ILE A 651 5 5 HELIX 22 AC4 PRO A 674 PHE A 686 1 13 HELIX 23 AC5 ASP A 703 ASP A 717 1 15 HELIX 24 AC6 ASP A 748 LEU A 750 5 3 HELIX 25 AC7 ARG A 768 ALA A 772 5 5 HELIX 26 AC8 SER A 801 LYS A 813 1 13 HELIX 27 AC9 GLN A 883 ALA A 887 5 5 HELIX 28 AD1 THR A 889 LYS A 899 1 11 SHEET 1 AA1 5 ALA A 545 PRO A 547 0 SHEET 2 AA1 5 TRP A 742 LYS A 746 1 O TRP A 742 N HIS A 546 SHEET 3 AA1 5 GLY A 721 THR A 726 -1 N LEU A 722 O LEU A 745 SHEET 4 AA1 5 PHE A 563 TYR A 567 -1 N GLU A 566 O MET A 723 SHEET 5 AA1 5 SER A 698 ASP A 700 -1 O LEU A 699 N CYS A 565 SHEET 1 AA2 5 VAL A 584 PHE A 587 0 SHEET 2 AA2 5 GLN A 572 ALA A 578 -1 N HIS A 577 O LYS A 585 SHEET 3 AA2 5 PHE A 616 ASP A 626 -1 O ALA A 622 N GLN A 572 SHEET 4 AA2 5 VAL A 655 LEU A 665 -1 O CYS A 656 N VAL A 623 SHEET 5 AA2 5 GLU A 668 SER A 669 -1 O GLU A 668 N LEU A 665 SHEET 1 AA3 4 GLN A 631 ILE A 632 0 SHEET 2 AA3 4 PHE A 616 ASP A 626 -1 N ASP A 626 O GLN A 631 SHEET 3 AA3 4 VAL A 655 LEU A 665 -1 O CYS A 656 N VAL A 623 SHEET 4 AA3 4 PHE A 693 PHE A 695 1 O VAL A 694 N ALA A 659 SHEET 1 AA4 6 VAL A 816 LEU A 817 0 SHEET 2 AA4 6 HIS A 834 LEU A 836 -1 O TRP A 835 N LEU A 817 SHEET 3 AA4 6 ASP A 755 LEU A 766 -1 N ALA A 764 O HIS A 834 SHEET 4 AA4 6 TYR A 775 ASP A 784 -1 O ALA A 781 N VAL A 760 SHEET 5 AA4 6 GLU A 789 LEU A 796 -1 O GLU A 789 N ASP A 784 SHEET 6 AA4 6 VAL A 824 ARG A 825 1 O ARG A 825 N LEU A 790 SHEET 1 AA5 5 VAL A 816 LEU A 817 0 SHEET 2 AA5 5 HIS A 834 LEU A 836 -1 O TRP A 835 N LEU A 817 SHEET 3 AA5 5 ASP A 755 LEU A 766 -1 N ALA A 764 O HIS A 834 SHEET 4 AA5 5 VAL A 841 CYS A 846 -1 O VAL A 844 N LEU A 757 SHEET 5 AA5 5 ARG A 874 VAL A 878 -1 O ARG A 877 N GLU A 843 SHEET 1 AA6 2 ASP A 848 SER A 852 0 SHEET 2 AA6 2 GLY A 867 ARG A 871 -1 O ARG A 871 N ASP A 848 LINK OP3 DG C 1 P AMP C 101 1555 1555 1.56 CISPEP 1 PHE A 476 PRO A 477 0 1.20 SITE 1 AC1 2 LYS A 487 TRP A 495 SITE 1 AC2 3 ARG A 409 ARG A 413 HOH A1109 SITE 1 AC3 16 GLU A 566 TYR A 567 LYS A 568 TYR A 569 SITE 2 AC3 16 ARG A 573 ARG A 589 GLU A 621 PHE A 660 SITE 3 AC3 16 MET A 723 LYS A 725 TRP A 742 LYS A 744 SITE 4 AC3 16 HOH A1164 DG C 1 HOH C 201 HOH C 207 SITE 1 AC4 5 DG B 9 HOH B 108 DC D 18 DG D 19 SITE 2 AC4 5 HOH D 214 CRYST1 71.486 101.171 115.291 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008674 0.00000