PDB Short entry for 6Q4V HEADER DNA BINDING PROTEIN 06-DEC-18 6Q4V TITLE KLENTAQ DNA POLYMERASE IN COMPLEX WITH DATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAQ POLYMERASE 1; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*(DOC))-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*AP*AP*CP*TP*GP*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)- COMPND 13 3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POLA, POL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS MODIFIED NUCLEOTIDE KLENTAQ DNA POLYMERASE NEXT-GENERATION KEYWDS 2 SEQUENCING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KROPP,K.DIEDERICHS,A.MARX REVDAT 5 24-JAN-24 6Q4V 1 LINK REVDAT 4 14-AUG-19 6Q4V 1 REMARK REVDAT 3 10-APR-19 6Q4V 1 JRNL REVDAT 2 20-MAR-19 6Q4V 1 JRNL REVDAT 1 27-FEB-19 6Q4V 0 JRNL AUTH H.M.KROPP,K.DIEDERICHS,A.MARX JRNL TITL THE STRUCTURE OF AN ARCHAEAL B-FAMILY DNA POLYMERASE IN JRNL TITL 2 COMPLEX WITH A CHEMICALLY MODIFIED NUCLEOTIDE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 5457 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30761722 JRNL DOI 10.1002/ANIE.201900315 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3283: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 81638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4203 - 6.1575 1.00 2673 157 0.1411 0.1641 REMARK 3 2 6.1575 - 4.8890 1.00 2692 146 0.1377 0.1958 REMARK 3 3 4.8890 - 4.2715 1.00 2700 125 0.1233 0.1834 REMARK 3 4 4.2715 - 3.8811 1.00 2648 170 0.1407 0.1540 REMARK 3 5 3.8811 - 3.6030 1.00 2660 177 0.1573 0.2213 REMARK 3 6 3.6030 - 3.3907 1.00 2665 151 0.1733 0.1661 REMARK 3 7 3.3907 - 3.2209 1.00 2705 132 0.1928 0.2114 REMARK 3 8 3.2209 - 3.0807 1.00 2676 149 0.2163 0.2260 REMARK 3 9 3.0807 - 2.9621 1.00 2643 137 0.2158 0.2646 REMARK 3 10 2.9621 - 2.8599 1.00 2711 146 0.2267 0.2655 REMARK 3 11 2.8599 - 2.7705 1.00 2712 150 0.2380 0.2797 REMARK 3 12 2.7705 - 2.6913 1.00 2654 142 0.2338 0.2714 REMARK 3 13 2.6913 - 2.6205 1.00 2683 162 0.2489 0.3106 REMARK 3 14 2.6205 - 2.5566 1.00 2659 132 0.2424 0.2556 REMARK 3 15 2.5566 - 2.4985 1.00 2654 165 0.2281 0.3074 REMARK 3 16 2.4985 - 2.4453 1.00 2683 133 0.2341 0.2860 REMARK 3 17 2.4453 - 2.3964 1.00 2716 133 0.2415 0.2446 REMARK 3 18 2.3964 - 2.3512 1.00 2704 111 0.2290 0.3051 REMARK 3 19 2.3512 - 2.3092 1.00 2713 131 0.2484 0.3003 REMARK 3 20 2.3092 - 2.2700 1.00 2660 157 0.2403 0.3025 REMARK 3 21 2.2700 - 2.2334 1.00 2654 126 0.2481 0.2732 REMARK 3 22 2.2334 - 2.1990 1.00 2739 121 0.2630 0.2801 REMARK 3 23 2.1990 - 2.1667 1.00 2687 142 0.2561 0.2990 REMARK 3 24 2.1667 - 2.1362 1.00 2719 120 0.2664 0.2985 REMARK 3 25 2.1362 - 2.1073 1.00 2644 130 0.2752 0.2832 REMARK 3 26 2.1073 - 2.0799 1.00 2696 136 0.2788 0.3083 REMARK 3 27 2.0799 - 2.0539 1.00 2741 139 0.2815 0.2702 REMARK 3 28 2.0539 - 2.0292 1.00 2640 155 0.3022 0.2950 REMARK 3 29 2.0292 - 2.0056 0.90 2396 136 0.3173 0.3157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5036 REMARK 3 ANGLE : 0.623 6937 REMARK 3 CHIRALITY : 0.040 764 REMARK 3 PLANARITY : 0.004 818 REMARK 3 DIHEDRAL : 15.853 2973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7538 -41.1164 -18.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.5246 T22: 0.4208 REMARK 3 T33: 0.6750 T12: -0.1452 REMARK 3 T13: 0.1212 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 1.7778 L22: 2.3810 REMARK 3 L33: 1.8995 L12: -0.5546 REMARK 3 L13: -0.0357 L23: 0.1740 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: 0.0249 S13: -0.7152 REMARK 3 S21: -0.3225 S22: 0.0666 S23: -0.5441 REMARK 3 S31: 0.4663 S32: -0.0373 S33: 0.0214 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 633 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7154 -12.5484 -1.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.4651 T22: 0.2837 REMARK 3 T33: 0.3658 T12: 0.1014 REMARK 3 T13: 0.0422 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.5802 L22: 1.5004 REMARK 3 L33: 3.9681 L12: 1.0622 REMARK 3 L13: -0.6702 L23: -0.2861 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: -0.0376 S13: 0.2441 REMARK 3 S21: 0.0852 S22: -0.0394 S23: 0.0076 REMARK 3 S31: -1.0306 S32: -0.4152 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 634 THROUGH 700 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9987 -12.1495 -1.8855 REMARK 3 T TENSOR REMARK 3 T11: 0.7859 T22: 1.2046 REMARK 3 T33: 0.5571 T12: 0.5011 REMARK 3 T13: 0.0461 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.5458 L22: 3.0017 REMARK 3 L33: 1.9104 L12: 0.3069 REMARK 3 L13: -0.7709 L23: 1.0726 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.2901 S13: 0.4418 REMARK 3 S21: 0.0856 S22: 0.2345 S23: 0.6348 REMARK 3 S31: -1.2264 S32: -1.4873 S33: -0.2132 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 701 THROUGH 832 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2947 -26.5523 -15.3742 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.6549 REMARK 3 T33: 0.3482 T12: -0.0243 REMARK 3 T13: -0.0113 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.5625 L22: 1.1521 REMARK 3 L33: 3.9622 L12: 0.4288 REMARK 3 L13: -0.0422 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: -0.1719 S12: 0.1863 S13: -0.0803 REMARK 3 S21: -0.3715 S22: 0.2618 S23: 0.1677 REMARK 3 S31: -0.0021 S32: -1.2198 S33: -0.1071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0610 -23.5446 5.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.3648 T22: 0.4237 REMARK 3 T33: 0.4776 T12: 0.0071 REMARK 3 T13: 0.0336 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 3.1367 L22: 2.3537 REMARK 3 L33: 3.6246 L12: 1.1740 REMARK 3 L13: 1.1588 L23: -0.4167 REMARK 3 S TENSOR REMARK 3 S11: 0.1451 S12: 0.4000 S13: -0.5474 REMARK 3 S21: 0.0711 S22: -0.3871 S23: -0.5409 REMARK 3 S31: -0.1567 S32: 0.4079 S33: 0.2397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 201 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7362 -21.7016 7.1696 REMARK 3 T TENSOR REMARK 3 T11: 0.6974 T22: 0.7622 REMARK 3 T33: 0.4078 T12: 0.0203 REMARK 3 T13: -0.0413 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.8818 L22: 4.4399 REMARK 3 L33: 5.2881 L12: 0.9038 REMARK 3 L13: 0.4611 L23: 4.5107 REMARK 3 S TENSOR REMARK 3 S11: 0.3000 S12: -0.1694 S13: 0.0480 REMARK 3 S21: 1.6566 S22: -0.5840 S23: -0.2044 REMARK 3 S31: 0.0178 S32: -1.0901 S33: 0.0543 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 206 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4408 -24.0175 5.9506 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.3231 REMARK 3 T33: 0.4502 T12: 0.0287 REMARK 3 T13: -0.0276 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.5529 L22: 3.0029 REMARK 3 L33: 3.1714 L12: 0.8662 REMARK 3 L13: -2.3707 L23: 0.7972 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: -0.0596 S13: -0.4183 REMARK 3 S21: 0.2978 S22: 0.3404 S23: -0.5134 REMARK 3 S31: -0.0213 S32: 0.5952 S33: -0.2137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200012572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81683 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.006 REMARK 200 RESOLUTION RANGE LOW (A) : 47.407 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.14 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 % PEG 4000, 0.2 M AMMONIUM ACETATE, REMARK 280 0.01 M MAGNESIUM (II) ACETATE, 0.1 M MES PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.41833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.83667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.83667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.41833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1140 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 292 REMARK 465 ALA A 293 REMARK 465 GLU A 832 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1012 O HOH A 1134 2.16 REMARK 500 O HIS A 676 OG SER A 679 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 347 136.10 -172.50 REMARK 500 THR A 399 -150.56 -99.83 REMARK 500 VAL A 433 -70.47 -126.65 REMARK 500 ASP A 496 -60.52 -103.56 REMARK 500 HIS A 526 138.37 -173.75 REMARK 500 TYR A 545 -57.60 -121.65 REMARK 500 VAL A 586 -9.72 -160.12 REMARK 500 HIS A 784 -67.07 72.61 REMARK 500 TYR A 811 87.13 -156.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 ASP A 785 OD1 111.2 REMARK 620 3 DTP A 901 O1A 104.1 87.1 REMARK 620 4 HOH A1049 O 103.6 89.6 151.4 REMARK 620 5 HOH A1057 O 92.5 154.8 78.8 92.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 903 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD1 REMARK 620 2 TYR A 611 O 72.6 REMARK 620 3 ASP A 785 OD2 95.1 101.9 REMARK 620 4 DTP A 901 O1G 82.5 81.4 175.3 REMARK 620 5 DTP A 901 O1B 164.4 97.9 99.0 83.8 REMARK 620 6 DTP A 901 O1A 104.4 174.9 82.5 94.1 84.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 301 DBREF 6Q4V A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 6Q4V B 101 112 PDB 6Q4V 6Q4V 101 112 DBREF 6Q4V C 201 216 PDB 6Q4V 6Q4V 201 216 SEQADV 6Q4V MET A 292 UNP P19821 INITIATING METHIONINE SEQRES 1 A 541 MET ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY SEQRES 2 A 541 ALA PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET SEQRES 3 A 541 TRP ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY SEQRES 4 A 541 ARG VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG SEQRES 5 A 541 ASP LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SEQRES 6 A 541 SER VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO SEQRES 7 A 541 GLY ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SEQRES 8 A 541 SER ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY SEQRES 9 A 541 GLY GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SEQRES 10 A 541 SER GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU SEQRES 11 A 541 GLY GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU SEQRES 12 A 541 ARG PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR SEQRES 13 A 541 GLY VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER SEQRES 14 A 541 LEU GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU SEQRES 15 A 541 VAL PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER SEQRES 16 A 541 ARG ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY SEQRES 17 A 541 LEU PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SEQRES 18 A 541 SER THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA SEQRES 19 A 541 HIS PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU SEQRES 20 A 541 THR LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP SEQRES 21 A 541 LEU ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE SEQRES 22 A 541 ASN GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER SEQRES 23 A 541 ASP PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU SEQRES 24 A 541 GLY GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY SEQRES 25 A 541 TRP LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU SEQRES 26 A 541 ARG VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE SEQRES 27 A 541 ARG VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR SEQRES 28 A 541 ALA SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP SEQRES 29 A 541 PRO LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY SEQRES 30 A 541 VAL LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU SEQRES 31 A 541 LEU ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU SEQRES 32 A 541 ARG TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE SEQRES 33 A 541 GLU LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL SEQRES 34 A 541 GLU THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU SEQRES 35 A 541 GLU ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG SEQRES 36 A 541 MET ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP SEQRES 37 A 541 LEU MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU SEQRES 38 A 541 GLU GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP SEQRES 39 A 541 GLU LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA SEQRES 40 A 541 VAL ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR SEQRES 41 A 541 PRO LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY SEQRES 42 A 541 GLU ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DC DA DOC SEQRES 1 C 16 DA DA DC DT DG DT DG DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC HET DOC B 112 30 HET DTP A 901 42 HET MG A 902 1 HET MN A 903 1 HET EDO C 301 10 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 DTP C10 H16 N5 O12 P3 FORMUL 5 MG MG 2+ FORMUL 6 MN MN 2+ FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *191(H2 O) HELIX 1 AA1 GLU A 337 ARG A 343 1 7 HELIX 2 AA2 LEU A 352 GLU A 363 1 12 HELIX 3 AA3 ASP A 372 ASP A 381 1 10 HELIX 4 AA4 THR A 386 GLY A 395 1 10 HELIX 5 AA5 GLU A 401 LEU A 420 1 20 HELIX 6 AA6 GLU A 423 VAL A 433 1 11 HELIX 7 AA7 VAL A 433 GLY A 448 1 16 HELIX 8 AA8 ASP A 452 GLY A 479 1 28 HELIX 9 AA9 SER A 486 ASP A 496 1 11 HELIX 10 AB1 SER A 515 ALA A 521 1 7 HELIX 11 AB2 PRO A 527 TYR A 545 1 19 HELIX 12 AB3 PRO A 548 ILE A 553 5 6 HELIX 13 AB4 THR A 588 ARG A 596 1 9 HELIX 14 AB5 GLN A 613 GLY A 624 1 12 HELIX 15 AB6 ASP A 625 GLU A 634 1 10 HELIX 16 AB7 ASP A 637 GLY A 648 1 12 HELIX 17 AB8 PRO A 650 VAL A 654 5 5 HELIX 18 AB9 ASP A 655 TYR A 671 1 17 HELIX 19 AC1 SER A 674 ALA A 683 1 10 HELIX 20 AC2 PRO A 685 SER A 699 1 15 HELIX 21 AC3 PRO A 701 GLY A 718 1 18 HELIX 22 AC4 PRO A 731 ALA A 735 5 5 HELIX 23 AC5 VAL A 737 MET A 775 1 39 HELIX 24 AC6 ARG A 795 GLY A 809 1 15 SHEET 1 AA1 4 GLU A 295 ALA A 297 0 SHEET 2 AA1 4 ARG A 331 ARG A 334 1 O VAL A 332 N ALA A 297 SHEET 3 AA1 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 AA1 4 PHE A 306 LEU A 311 -1 N GLY A 308 O ALA A 325 SHEET 1 AA2 2 ARG A 450 LEU A 451 0 SHEET 2 AA2 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 AA3 2 ARG A 563 ASN A 565 0 SHEET 2 AA3 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 AA4 4 ARG A 778 GLN A 782 0 SHEET 2 AA4 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 AA4 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 AA4 4 VAL A 819 GLY A 824 -1 O GLU A 820 N ASP A 610 SHEET 1 AA5 2 TYR A 719 GLU A 721 0 SHEET 2 AA5 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DA B 111 P DOC B 112 1555 1555 1.56 LINK OD2 ASP A 610 MG MG A 902 1555 1555 2.19 LINK OD1 ASP A 610 MN MN A 903 1555 1555 2.16 LINK O TYR A 611 MN MN A 903 1555 1555 2.18 LINK OD1 ASP A 785 MG MG A 902 1555 1555 2.10 LINK OD2 ASP A 785 MN MN A 903 1555 1555 2.01 LINK O1A DTP A 901 MG MG A 902 1555 1555 2.48 LINK O1G DTP A 901 MN MN A 903 1555 1555 2.17 LINK O1B DTP A 901 MN MN A 903 1555 1555 2.13 LINK O1A DTP A 901 MN MN A 903 1555 1555 2.22 LINK MG MG A 902 O HOH A1049 1555 1555 2.39 LINK MG MG A 902 O HOH A1057 1555 1555 2.62 CISPEP 1 TRP A 299 PRO A 300 0 3.69 CISPEP 2 ASP A 578 PRO A 579 0 -2.60 SITE 1 AC1 22 ARG A 573 ASP A 610 TYR A 611 SER A 612 SITE 2 AC1 22 GLN A 613 ILE A 614 GLU A 615 HIS A 639 SITE 3 AC1 22 ARG A 659 LYS A 663 PHE A 667 ASP A 785 SITE 4 AC1 22 MG A 902 MN A 903 HOH A1023 HOH A1057 SITE 5 AC1 22 HOH A1067 HOH A1115 DOC B 112 HOH B 208 SITE 6 AC1 22 DT C 204 DG C 205 SITE 1 AC2 7 ASP A 610 ASP A 785 DTP A 901 MN A 903 SITE 2 AC2 7 HOH A1049 HOH A1057 DOC B 112 SITE 1 AC3 5 ASP A 610 TYR A 611 ASP A 785 DTP A 901 SITE 2 AC3 5 MG A 902 SITE 1 AC4 2 DG C 213 DG C 214 CRYST1 109.482 109.482 91.255 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009134 0.005273 0.000000 0.00000 SCALE2 0.000000 0.010547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010958 0.00000