PDB Short entry for 6QHJ HEADER SIGNALING PROTEIN 16-JAN-19 6QHJ TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF CALCIUM- AND SODIUM-BOUND MOUSE TITLE 2 OLFACTOMEDIN-1 BETA-PROPELLER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOELIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEURONAL OLFACTOMEDIN-RELATED ER LOCALIZED PROTEIN, COMPND 5 OLFACTOMEDIN-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OLFM1, NOE1, NOEL1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 EBNA1 GNTI-/-; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS CALCIUM, BETA-PROPELLER, SECRETED, BRAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,H.G.VAN DEN HOEK,B.J.C.JANSSEN REVDAT 6 24-JAN-24 6QHJ 1 HETSYN REVDAT 5 29-JUL-20 6QHJ 1 COMPND JRNL REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 27-NOV-19 6QHJ 1 JRNL REVDAT 3 20-NOV-19 6QHJ 1 JRNL REVDAT 2 16-OCT-19 6QHJ 1 COMPND SOURCE REMARK SSBOND REVDAT 2 2 1 LINK SITE CRYST1 ATOM REVDAT 1 11-SEP-19 6QHJ 0 JRNL AUTH M.F.PRONKER,H.VAN DEN HOEK,B.J.C.JANSSEN JRNL TITL DESIGN AND STRUCTURAL CHARACTERISATION OF OLFACTOMEDIN-1 JRNL TITL 2 VARIANTS AS TOOLS FOR FUNCTIONAL STUDIES. JRNL REF BMC MOL CELL BIOL V. 20 50 2019 JRNL REFN ESSN 2661-8850 JRNL PMID 31726976 JRNL DOI 10.1186/S12860-019-0232-1 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 72013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7330 - 3.7016 1.00 2954 180 0.1326 0.1233 REMARK 3 2 3.7016 - 2.9386 1.00 2848 152 0.1133 0.1241 REMARK 3 3 2.9386 - 2.5673 1.00 2826 159 0.1150 0.1263 REMARK 3 4 2.5673 - 2.3326 0.99 2806 143 0.1092 0.1308 REMARK 3 5 2.3326 - 2.1654 1.00 2792 149 0.1015 0.1175 REMARK 3 6 2.1654 - 2.0378 1.00 2808 138 0.0932 0.1045 REMARK 3 7 2.0378 - 1.9357 1.00 2791 132 0.0918 0.1109 REMARK 3 8 1.9357 - 1.8515 1.00 2806 151 0.0921 0.1209 REMARK 3 9 1.8515 - 1.7802 1.00 2772 162 0.0928 0.1200 REMARK 3 10 1.7802 - 1.7188 1.00 2780 137 0.0952 0.1438 REMARK 3 11 1.7188 - 1.6650 1.00 2787 146 0.0939 0.1147 REMARK 3 12 1.6650 - 1.6175 1.00 2797 133 0.0928 0.1242 REMARK 3 13 1.6175 - 1.5749 1.00 2774 135 0.0983 0.1201 REMARK 3 14 1.5749 - 1.5365 1.00 2760 128 0.1080 0.1424 REMARK 3 15 1.5365 - 1.5015 1.00 2769 148 0.1190 0.1545 REMARK 3 16 1.5015 - 1.4696 1.00 2769 152 0.1359 0.1751 REMARK 3 17 1.4696 - 1.4402 1.00 2759 140 0.1658 0.1817 REMARK 3 18 1.4402 - 1.4130 0.99 2766 142 0.2084 0.2825 REMARK 3 19 1.4130 - 1.3878 0.99 2684 158 0.2131 0.2317 REMARK 3 20 1.3878 - 1.3642 0.95 2660 132 0.2253 0.2424 REMARK 3 21 1.3642 - 1.3422 0.95 2567 149 0.2362 0.2553 REMARK 3 22 1.3422 - 1.3216 0.89 2465 143 0.2472 0.2878 REMARK 3 23 1.3216 - 1.3021 0.82 2290 109 0.2676 0.2618 REMARK 3 24 1.3021 - 1.2838 0.75 2066 110 0.2764 0.2608 REMARK 3 25 1.2838 - 1.2664 0.66 1778 107 0.2866 0.3016 REMARK 3 26 1.2664 - 1.2500 0.55 1516 88 0.3081 0.3426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2400 REMARK 3 ANGLE : 1.168 3308 REMARK 3 CHIRALITY : 0.097 350 REMARK 3 PLANARITY : 0.008 434 REMARK 3 DIHEDRAL : 12.286 882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : C(110) REMARK 200 OPTICS : CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 36.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 8 % (W/V) PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.89700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.81550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.85950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.89700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.81550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.85950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.89700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.81550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.85950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.89700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.81550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.85950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 684 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 SER A 225 REMARK 465 HIS A 478 REMARK 465 ALA A 479 REMARK 465 ALA A 480 REMARK 465 ALA A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 329 O HOH A 601 1.51 REMARK 500 HZ3 LYS A 229 O HOH A 604 1.57 REMARK 500 O HOH A 609 O HOH A 724 1.99 REMARK 500 OG1 THR A 329 O HOH A 601 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 334 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 453 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 342 39.76 72.73 REMARK 500 ASP A 360 -164.95 -127.62 REMARK 500 SER A 447 -25.31 100.99 REMARK 500 SER A 447 -24.27 100.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 302 O REMARK 620 2 GLN A 303 O 66.5 REMARK 620 3 ASP A 356 OD1 88.5 151.0 REMARK 620 4 LEU A 357 O 78.4 88.4 101.4 REMARK 620 5 ASP A 453 OD2 162.1 95.9 109.3 98.7 REMARK 620 6 HOH A 667 O 98.3 71.0 99.8 158.4 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 356 OD2 REMARK 620 2 GLU A 404 OE1 86.7 REMARK 620 3 ALA A 405 O 92.7 82.9 REMARK 620 4 LEU A 452 O 169.8 83.6 89.2 REMARK 620 5 ASP A 453 OD1 105.5 165.6 103.9 83.8 REMARK 620 6 HOH A 628 O 94.3 82.6 163.5 81.4 88.6 REMARK 620 N 1 2 3 4 5 DBREF 6QHJ A 226 478 UNP Q99784 NOE1_HUMAN 226 478 SEQADV 6QHJ GLY A 224 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ SER A 225 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ ASN A 362 UNP Q99784 SER 362 CONFLICT SEQADV 6QHJ ILE A 379 UNP Q99784 VAL 379 CONFLICT SEQADV 6QHJ LYS A 381 UNP Q99784 ARG 381 CONFLICT SEQADV 6QHJ ILE A 389 UNP Q99784 THR 389 CONFLICT SEQADV 6QHJ THR A 470 UNP Q99784 ILE 470 CONFLICT SEQADV 6QHJ ALA A 479 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ ALA A 480 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ ALA A 481 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 482 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 483 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 484 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 485 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 486 UNP Q99784 EXPRESSION TAG SEQADV 6QHJ HIS A 487 UNP Q99784 EXPRESSION TAG SEQRES 1 A 264 GLY SER ALA CYS GLY LYS LEU THR GLY ILE SER ASP PRO SEQRES 2 A 264 VAL THR VAL LYS THR SER GLY SER ARG PHE GLY SER TRP SEQRES 3 A 264 MET THR ASP PRO LEU ALA PRO GLU GLY ASP ASN ARG VAL SEQRES 4 A 264 TRP TYR MET ASP GLY TYR HIS ASN ASN ARG PHE VAL ARG SEQRES 5 A 264 GLU TYR LYS SER MET VAL ASP PHE MET ASN THR ASP ASN SEQRES 6 A 264 PHE THR SER HIS ARG LEU PRO HIS PRO TRP SER GLY THR SEQRES 7 A 264 GLY GLN VAL VAL TYR ASN GLY SER ILE TYR PHE ASN LYS SEQRES 8 A 264 PHE GLN SER HIS ILE ILE ILE ARG PHE ASP LEU LYS THR SEQRES 9 A 264 GLU THR ILE LEU LYS THR ARG SER LEU ASP TYR ALA GLY SEQRES 10 A 264 TYR ASN ASN MET TYR HIS TYR ALA TRP GLY GLY HIS SER SEQRES 11 A 264 ASP ILE ASP LEU MET VAL ASP GLU ASN GLY LEU TRP ALA SEQRES 12 A 264 VAL TYR ALA THR ASN GLN ASN ALA GLY ASN ILE VAL ILE SEQRES 13 A 264 SER LYS LEU ASP PRO VAL SER LEU GLN ILE LEU GLN THR SEQRES 14 A 264 TRP ASN THR SER TYR PRO LYS ARG SER ALA GLY GLU ALA SEQRES 15 A 264 PHE ILE ILE CYS GLY THR LEU TYR VAL THR ASN GLY TYR SEQRES 16 A 264 SER GLY GLY THR LYS VAL HIS TYR ALA TYR GLN THR ASN SEQRES 17 A 264 ALA SER THR TYR GLU TYR ILE ASP ILE PRO PHE GLN ASN SEQRES 18 A 264 LYS TYR SER HIS ILE SER MET LEU ASP TYR ASN PRO LYS SEQRES 19 A 264 ASP ARG ALA LEU TYR ALA TRP ASN ASN GLY HIS GLN THR SEQRES 20 A 264 LEU TYR ASN VAL THR LEU PHE HIS ALA ALA ALA HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS HET NAG A 501 28 HET NAG A 502 28 HET NAG A 503 28 HET NAG A 504 28 HET CA A 505 1 HET NA A 506 1 HET GOL A 507 14 HET GOL A 508 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 CA CA 2+ FORMUL 7 NA NA 1+ FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *298(H2 O) HELIX 1 AA1 SER A 279 THR A 286 1 8 HELIX 2 AA2 ARG A 400 ALA A 402 5 3 SHEET 1 AA1 3 LEU A 230 ILE A 233 0 SHEET 2 AA1 3 HIS A 468 LEU A 476 -1 O THR A 475 N THR A 231 SHEET 3 AA1 3 VAL A 237 THR A 241 -1 N LYS A 240 O GLN A 469 SHEET 1 AA2 4 LEU A 230 ILE A 233 0 SHEET 2 AA2 4 HIS A 468 LEU A 476 -1 O THR A 475 N THR A 231 SHEET 3 AA2 4 ALA A 460 ASN A 465 -1 N ASN A 465 O HIS A 468 SHEET 4 AA2 4 ILE A 449 ASN A 455 -1 N ASP A 453 O TYR A 462 SHEET 1 AA3 4 GLY A 247 MET A 250 0 SHEET 2 AA3 4 VAL A 262 ASP A 266 -1 O TRP A 263 N MET A 250 SHEET 3 AA3 4 PHE A 273 TYR A 277 -1 O ARG A 275 N TYR A 264 SHEET 4 AA3 4 THR A 290 ARG A 293 -1 O HIS A 292 N VAL A 274 SHEET 1 AA4 4 VAL A 304 TYR A 306 0 SHEET 2 AA4 4 SER A 309 ASN A 313 -1 O TYR A 311 N VAL A 304 SHEET 3 AA4 4 ILE A 319 ASP A 324 -1 O PHE A 323 N ILE A 310 SHEET 4 AA4 4 THR A 329 SER A 335 -1 O LYS A 332 N ARG A 322 SHEET 1 AA5 4 ASP A 356 ASP A 360 0 SHEET 2 AA5 4 GLY A 363 ALA A 369 -1 O VAL A 367 N ASP A 356 SHEET 3 AA5 4 ASN A 376 LEU A 382 -1 O VAL A 378 N TYR A 368 SHEET 4 AA5 4 ILE A 389 PRO A 398 -1 O TYR A 397 N ILE A 377 SHEET 1 AA6 4 ALA A 405 ILE A 408 0 SHEET 2 AA6 4 THR A 411 THR A 415 -1 O TYR A 413 N PHE A 406 SHEET 3 AA6 4 LYS A 423 GLN A 429 -1 O TYR A 426 N VAL A 414 SHEET 4 AA6 4 THR A 434 PRO A 441 -1 O THR A 434 N GLN A 429 SSBOND 1 CYS A 227 CYS A 409 1555 1555 1.99 LINK ND2 ASN A 288 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN A 307 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN A 394 C1 NAG A 503 1555 1555 1.43 LINK ND2 ASN A 473 C1 NAG A 504 1555 1555 1.44 LINK O GLY A 302 NA NA A 506 1555 1555 2.86 LINK O GLN A 303 NA NA A 506 1555 1555 3.04 LINK OD2 ASP A 356 CA CA A 505 1555 1555 2.34 LINK OD1 ASP A 356 NA NA A 506 1555 1555 2.25 LINK O LEU A 357 NA NA A 506 1555 1555 2.22 LINK OE1 GLU A 404 CA CA A 505 1555 1555 2.36 LINK O ALA A 405 CA CA A 505 1555 1555 2.30 LINK O LEU A 452 CA CA A 505 1555 1555 2.34 LINK OD1 ASP A 453 CA CA A 505 1555 1555 2.29 LINK OD2 ASP A 453 NA NA A 506 1555 1555 2.29 LINK CA CA A 505 O HOH A 628 1555 1555 2.39 LINK NA NA A 506 O HOH A 667 1555 1555 2.39 CRYST1 61.794 79.631 111.719 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008951 0.00000