PDB Short entry for 6QVW
HEADER    TRANSCRIPTION                           05-MAR-19   6QVW              
TITLE     SOLUTION STRUCTURE OF THE FREE FOXO1 DNA BINDING DOMAIN               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: FORKHEAD BOX PROTEIN O1;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: FORKHEAD BOX PROTEIN O1A,FORKHEAD IN RHABDOMYOSARCOMA;      
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: FOXO1, FKHR, FOXO1A;                                           
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG                             
KEYWDS    FOXO1, TRASNCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    30                                                                    
AUTHOR    K.PSENAKOVA,T.OBSIL,V.VEVERKA,V.OBSILOVA,K.KOHOUTOVA                  
REVDAT   3   14-JUN-23 6QVW    1       JRNL                                     
REVDAT   2   11-SEP-19 6QVW    1       JRNL                                     
REVDAT   1   04-SEP-19 6QVW    0                                                
JRNL        AUTH   K.PSENAKOVA,K.KOHOUTOVA,V.OBSILOVA,M.J.AUSSERLECHNER,        
JRNL        AUTH 2 V.VEVERKA,T.OBSIL                                            
JRNL        TITL   FORKHEAD DOMAINS OF FOXO TRANSCRIPTION FACTORS DIFFER IN     
JRNL        TITL 2 BOTH OVERALL CONFORMATION AND DYNAMICS.                      
JRNL        REF    CELLS                         V.   8       2019              
JRNL        REFN                   ESSN 2073-4409                               
JRNL        PMID   31450545                                                     
JRNL        DOI    10.3390/CELLS8090966                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : YASARA                                               
REMARK   3   AUTHORS     : YASARA                                               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6QVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19.                  
REMARK 100 THE DEPOSITION ID IS D_1292101018.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 70                                 
REMARK 210  PRESSURE                       : 1 BAR                              
REMARK 210  SAMPLE CONTENTS                : 380 UM [U-13C; U-15N] FOXO1 DBD,   
REMARK 210                                   20 MM SODIUM PHOSPHATE, 50 MM      
REMARK 210                                   POTASSIUM CHLORIDE, 2 MM TCEP,     
REMARK 210                                   100 % N/A N/A, 90% H2O/10% D2O     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D HNCACB; 3D CBCA(CO)NH; 3D       
REMARK 210                                   HNCO; 3D HNCACO; 3D HBHA(CO)NH;    
REMARK 210                                   3D HCCH-TOCSY; 3D N-EDITED NOESY;  
REMARK 210                                   3D C-EDITED NOESY                  
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 850 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE III                         
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : CYANA, SPARKY, TOPSPIN             
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 30                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2                             
REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A 153      124.66     70.33                                   
REMARK 500  1 ALA A 156     -173.06     62.07                                   
REMARK 500  1 HIS A 217        8.46     54.91                                   
REMARK 500  1 ALA A 252      169.62     67.46                                   
REMARK 500  1 LYS A 259      -37.75   -149.37                                   
REMARK 500  2 LEU A 153      160.56     72.20                                   
REMARK 500  2 ALA A 156     -155.89     56.66                                   
REMARK 500  2 ASN A 159      105.51   -167.02                                   
REMARK 500  2 ALA A 261       19.13   -142.96                                   
REMARK 500  3 HIS A 217       16.26     42.36                                   
REMARK 500  3 THR A 228       16.67     47.42                                   
REMARK 500  3 LYS A 230      -54.60   -130.43                                   
REMARK 500  3 ALA A 252       57.07   -146.89                                   
REMARK 500  4 ASN A 159       79.60   -104.87                                   
REMARK 500  4 THR A 228       28.38    -78.01                                   
REMARK 500  4 SER A 258      162.89     66.34                                   
REMARK 500  5 SER A 155       40.87   -102.85                                   
REMARK 500  5 ASN A 159       75.45     55.89                                   
REMARK 500  5 HIS A 217        8.56     53.79                                   
REMARK 500  5 THR A 228       37.23     34.47                                   
REMARK 500  5 SER A 243     -176.93     60.74                                   
REMARK 500  5 MET A 254       46.78   -159.70                                   
REMARK 500  6 LEU A 153      118.18     68.88                                   
REMARK 500  6 ALA A 156     -154.13   -135.35                                   
REMARK 500  6 ASN A 159       73.95     52.18                                   
REMARK 500  6 HIS A 217        3.09     42.97                                   
REMARK 500  6 LYS A 230      -48.12   -144.46                                   
REMARK 500  6 LYS A 245       47.67    -80.34                                   
REMARK 500  6 MET A 254     -169.78   -160.50                                   
REMARK 500  6 LYS A 262     -147.77     46.33                                   
REMARK 500  7 ASN A 159      107.49   -161.34                                   
REMARK 500  7 SER A 218       -3.21    -59.26                                   
REMARK 500  7 SER A 232      167.01     64.30                                   
REMARK 500  7 ARG A 250       37.97   -150.72                                   
REMARK 500  7 MET A 254       84.88     60.54                                   
REMARK 500  8 LEU A 153      167.38     69.15                                   
REMARK 500  8 SER A 218       -4.48    -59.03                                   
REMARK 500  8 SER A 243     -145.80     64.04                                   
REMARK 500  8 MET A 254       43.71   -141.03                                   
REMARK 500  8 PHE A 260      159.33     60.86                                   
REMARK 500  8 SER A 263      -47.76   -146.99                                   
REMARK 500  8 ARG A 264      -93.80     62.43                                   
REMARK 500  9 SER A 155     -173.22     61.91                                   
REMARK 500  9 HIS A 217       21.90     40.22                                   
REMARK 500  9 LYS A 245       47.57    -77.21                                   
REMARK 500  9 ALA A 251       42.09   -150.16                                   
REMARK 500  9 MET A 254       87.86   -155.49                                   
REMARK 500  9 PHE A 260      155.29     65.02                                   
REMARK 500 10 ALA A 156     -116.39     49.24                                   
REMARK 500 10 ASN A 159       46.11    -87.37                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     183 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 34364   RELATED DB: BMRB                                 
REMARK 900 SOLUTION STRUCTURE OF THE FREE FOXO1 DNA BINDING DOMAIN              
DBREF  6QVW A  156   269  UNP    Q12778   FOXO1_HUMAN    159    272             
SEQADV 6QVW GLY A  151  UNP  Q12778              EXPRESSION TAG                 
SEQADV 6QVW PRO A  152  UNP  Q12778              EXPRESSION TAG                 
SEQADV 6QVW LEU A  153  UNP  Q12778              EXPRESSION TAG                 
SEQADV 6QVW GLY A  154  UNP  Q12778              EXPRESSION TAG                 
SEQADV 6QVW SER A  155  UNP  Q12778              EXPRESSION TAG                 
SEQADV 6QVW GLY A  265  UNP  Q12778    SER   268 CONFLICT                       
SEQRES   1 A  119  GLY PRO LEU GLY SER ALA TRP GLY ASN LEU SER TYR ALA          
SEQRES   2 A  119  ASP LEU ILE THR LYS ALA ILE GLU SER SER ALA GLU LYS          
SEQRES   3 A  119  ARG LEU THR LEU SER GLN ILE TYR GLU TRP MET VAL LYS          
SEQRES   4 A  119  SER VAL PRO TYR PHE LYS ASP LYS GLY ASP SER ASN SER          
SEQRES   5 A  119  SER ALA GLY TRP LYS ASN SER ILE ARG HIS ASN LEU SER          
SEQRES   6 A  119  LEU HIS SER LYS PHE ILE ARG VAL GLN ASN GLU GLY THR          
SEQRES   7 A  119  GLY LYS SER SER TRP TRP MET LEU ASN PRO GLU GLY GLY          
SEQRES   8 A  119  LYS SER GLY LYS SER PRO ARG ARG ARG ALA ALA SER MET          
SEQRES   9 A  119  ASP ASN ASN SER LYS PHE ALA LYS SER ARG GLY ARG ALA          
SEQRES  10 A  119  ALA LYS                                                      
HELIX    1 AA1 SER A  161  SER A  173  1                                  13    
HELIX    2 AA2 LEU A  180  VAL A  191  1                                  12    
HELIX    3 AA3 VAL A  191  LYS A  197  1                                   7    
HELIX    4 AA4 SER A  202  LEU A  216  1                                  15    
SHEET    1 AA1 3 ARG A 177  THR A 179  0                                        
SHEET    2 AA1 3 TRP A 233  LEU A 236 -1  O  TRP A 234   N  LEU A 178           
SHEET    3 AA1 3 PHE A 220  VAL A 223 -1  N  ILE A 221   O  MET A 235           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000