PDB Short entry for 6RNO HEADER HYDROLASE 09-MAY-19 6RNO TITLE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE LLFPG PROTEIN, A THF-DNA TITLE 2 AND AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAPY-DNA GLYCOSYLASE,DNA-(APURINIC OR APYRIMIDINIC SITE) COMPND 5 LYASE MUTM,AP LYASE MUTM; COMPND 6 EC: 3.2.2.23,4.2.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: MUTM, FPG, NCDO763_0992; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE COMPLEX, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,S.GOFFINONT,B.CASTAING REVDAT 2 24-JAN-24 6RNO 1 REMARK REVDAT 1 15-APR-20 6RNO 0 JRNL AUTH C.RIEUX,S.GOFFINONT,F.COSTE,Z.TBER,J.CROS,V.ROY,M.GUERIN, JRNL AUTH 2 V.GAUDON,S.BOURG,A.BIELA,V.AUCAGNE,L.AGROFOGLIO,N.GARNIER, JRNL AUTH 3 B.CASTAING JRNL TITL THIOPURINE DERIVATIVE-INDUCED FPG/NEI DNA GLYCOSYLASE JRNL TITL 2 INHIBITION: STRUCTURAL, DYNAMIC AND FUNCTIONAL INSIGHTS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32192183 JRNL DOI 10.3390/IJMS21062058 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5453 - 6.0003 1.00 2686 142 0.1534 0.1869 REMARK 3 2 6.0003 - 4.7640 1.00 2692 139 0.1306 0.1841 REMARK 3 3 4.7640 - 4.1622 1.00 2693 130 0.1095 0.1277 REMARK 3 4 4.1622 - 3.7818 1.00 2706 144 0.1209 0.1500 REMARK 3 5 3.7818 - 3.5109 1.00 2684 146 0.1292 0.1636 REMARK 3 6 3.5109 - 3.3039 1.00 2678 157 0.1328 0.1961 REMARK 3 7 3.3039 - 3.1385 1.00 2696 131 0.1615 0.1954 REMARK 3 8 3.1385 - 3.0019 1.00 2711 147 0.1877 0.2409 REMARK 3 9 3.0019 - 2.8863 1.00 2656 143 0.2026 0.2458 REMARK 3 10 2.8863 - 2.7868 1.00 2714 155 0.2011 0.2605 REMARK 3 11 2.7868 - 2.6996 1.00 2640 160 0.2080 0.2328 REMARK 3 12 2.6996 - 2.6225 1.00 2740 135 0.2151 0.2500 REMARK 3 13 2.6225 - 2.5534 1.00 2686 119 0.2337 0.3022 REMARK 3 14 2.5534 - 2.4911 1.00 2710 150 0.2398 0.3304 REMARK 3 15 2.4911 - 2.4345 1.00 2686 135 0.2276 0.2759 REMARK 3 16 2.4345 - 2.3827 1.00 2687 160 0.2352 0.2775 REMARK 3 17 2.3827 - 2.3350 1.00 2699 139 0.2518 0.2777 REMARK 3 18 2.3350 - 2.2910 1.00 2702 130 0.2779 0.3002 REMARK 3 19 2.2910 - 2.2501 1.00 2733 121 0.2978 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2789 REMARK 3 ANGLE : 1.262 3874 REMARK 3 CHIRALITY : 0.053 438 REMARK 3 PLANARITY : 0.005 394 REMARK 3 DIHEDRAL : 20.230 1090 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8871 88.3991 151.5705 REMARK 3 T TENSOR REMARK 3 T11: 0.6224 T22: 0.7433 REMARK 3 T33: 0.6344 T12: 0.0434 REMARK 3 T13: 0.0874 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 3.5093 L22: 4.3230 REMARK 3 L33: 5.2245 L12: 1.0049 REMARK 3 L13: -0.9605 L23: 0.0548 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: 0.0991 S13: -0.2194 REMARK 3 S21: -0.5442 S22: 0.0559 S23: -0.8664 REMARK 3 S31: 0.2739 S32: 1.2186 S33: 0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.0692 85.7054 159.5385 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 1.2404 REMARK 3 T33: 0.6574 T12: 0.1292 REMARK 3 T13: -0.0656 T23: 0.2176 REMARK 3 L TENSOR REMARK 3 L11: 7.6365 L22: 4.9421 REMARK 3 L33: 6.8187 L12: 1.0756 REMARK 3 L13: 7.0955 L23: -0.0394 REMARK 3 S TENSOR REMARK 3 S11: -0.5707 S12: -0.5107 S13: -0.6186 REMARK 3 S21: 0.5369 S22: 0.1455 S23: -0.4366 REMARK 3 S31: -0.8520 S32: 1.4084 S33: 0.6862 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 23 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.4940 93.5914 139.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.8765 T22: 0.7201 REMARK 3 T33: 0.7126 T12: -0.1197 REMARK 3 T13: 0.1735 T23: 0.1719 REMARK 3 L TENSOR REMARK 3 L11: 6.1779 L22: 3.5235 REMARK 3 L33: 2.7581 L12: 3.6577 REMARK 3 L13: 0.1755 L23: -1.8287 REMARK 3 S TENSOR REMARK 3 S11: 0.1763 S12: 0.5977 S13: 1.3502 REMARK 3 S21: -1.5125 S22: -0.1747 S23: -0.1390 REMARK 3 S31: -0.7847 S32: 0.8095 S33: 0.0819 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.6161 80.5635 152.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.4738 T22: 0.3366 REMARK 3 T33: 0.4218 T12: -0.0131 REMARK 3 T13: -0.0056 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.5384 L22: 2.1378 REMARK 3 L33: 4.4631 L12: 0.5177 REMARK 3 L13: 1.1413 L23: 0.9825 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: -0.0430 S13: -0.0259 REMARK 3 S21: -0.0317 S22: -0.1593 S23: 0.3156 REMARK 3 S31: 0.3193 S32: -0.3510 S33: 0.0406 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.0666 81.6858 157.7823 REMARK 3 T TENSOR REMARK 3 T11: 0.4808 T22: 0.3077 REMARK 3 T33: 0.4400 T12: 0.0009 REMARK 3 T13: 0.0196 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.9974 L22: 1.7540 REMARK 3 L33: 2.7184 L12: 0.9346 REMARK 3 L13: 0.7700 L23: 0.7078 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: -0.0466 S13: 0.0467 REMARK 3 S21: 0.1458 S22: -0.1857 S23: 0.2029 REMARK 3 S31: 0.3870 S32: -0.2046 S33: 0.0008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.7469 94.1955 174.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.4444 T22: 0.4387 REMARK 3 T33: 0.4396 T12: -0.0964 REMARK 3 T13: -0.0165 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 6.6926 L22: 5.0240 REMARK 3 L33: 7.8240 L12: 0.0074 REMARK 3 L13: -0.7336 L23: 1.4454 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: -0.7892 S13: 0.0392 REMARK 3 S21: 0.5714 S22: -0.0571 S23: -0.1916 REMARK 3 S31: 0.2163 S32: 0.6807 S33: -0.1785 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.0504 101.1055 168.9624 REMARK 3 T TENSOR REMARK 3 T11: 0.5951 T22: 0.3734 REMARK 3 T33: 0.5545 T12: -0.0697 REMARK 3 T13: 0.0218 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.0836 L22: 4.2042 REMARK 3 L33: 3.8029 L12: 0.9021 REMARK 3 L13: 1.0346 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.2147 S13: 0.5002 REMARK 3 S21: 0.3054 S22: -0.2359 S23: -0.0127 REMARK 3 S31: -0.5340 S32: 0.2372 S33: 0.2773 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.8245 102.7216 153.4161 REMARK 3 T TENSOR REMARK 3 T11: 1.0133 T22: 0.5938 REMARK 3 T33: 0.9079 T12: 0.0022 REMARK 3 T13: -0.1430 T23: 0.0904 REMARK 3 L TENSOR REMARK 3 L11: 8.9874 L22: 8.9275 REMARK 3 L33: 0.3169 L12: 8.9351 REMARK 3 L13: 1.4502 L23: 1.4241 REMARK 3 S TENSOR REMARK 3 S11: -0.8407 S12: 0.5715 S13: 1.0235 REMARK 3 S21: -1.4173 S22: 0.4449 S23: 1.0195 REMARK 3 S31: -0.9863 S32: -0.1873 S33: 0.3845 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.7096 109.0711 159.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.8041 T22: 0.5237 REMARK 3 T33: 0.7359 T12: -0.2359 REMARK 3 T13: -0.0299 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 4.6016 L22: 8.5160 REMARK 3 L33: 7.7432 L12: 1.2985 REMARK 3 L13: 2.5896 L23: -2.7843 REMARK 3 S TENSOR REMARK 3 S11: -0.2446 S12: -0.0185 S13: 1.0049 REMARK 3 S21: 0.2894 S22: -0.1774 S23: 0.1058 REMARK 3 S31: -1.4294 S32: 0.4573 S33: 0.3706 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.13800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.71150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.71150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.06900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.71150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.71150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.20700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.71150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.71150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.06900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.71150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.71150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.20700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.13800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 ARG A 31 CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 78 CE NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 65 NH1 ARG A 150 8557 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -121.12 43.76 REMARK 500 GLU A 76 17.28 -144.09 REMARK 500 ASP A 107 100.02 -161.27 REMARK 500 VAL A 166 146.00 -170.90 REMARK 500 VAL A 237 -33.16 -134.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KBQ D 101 DBREF1 6RNO A 1 271 UNP A0A165FVI1_LACLC DBREF2 6RNO A A0A165FVI1 2 272 DBREF 6RNO D 1 14 PDB 6RNO 6RNO 1 14 DBREF 6RNO E 15 28 PDB 6RNO 6RNO 15 28 SEQRES 1 A 271 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 D 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 D 14 DG SEQRES 1 E 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 E 14 DA HET 3DR D 7 11 HET GOL A 301 6 HET KBQ D 101 11 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM KBQ 2-SULFANYLIDENE-1,7-DIHYDROPYRROLO[2,3-D]PYRIMIDIN-4- HETNAM 2 KBQ ONE HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 KBQ C6 H5 N3 O S FORMUL 6 HOH *75(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 129 1 9 HELIX 5 AA5 ASP A 141 SER A 152 1 12 HELIX 6 AA6 LYS A 155 GLU A 162 1 8 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 LEU A 235 5 6 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O LYS A 97 N SER A 24 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O LEU A 103 N MET A 96 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N LYS A 78 O ALA A 106 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O SER A 71 N LEU A 59 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O GLU A 115 N ILE A 70 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O THR A 262 N ILE A 255 SSBOND 1 CYS A 245 CYS A 265 1555 1555 2.04 SSBOND 2 CYS A 265 CYS A 268 1555 1555 2.04 LINK O3' DT D 6 P 3DR D 7 1555 1555 1.61 LINK O3' 3DR D 7 P DT D 8 1555 1555 1.61 SITE 1 AC1 7 TYR A 58 HIS A 72 ARG A 74 THR A 113 SITE 2 AC1 7 LYS A 129 DT D 9 DT D 10 SITE 1 AC2 10 LYS A 57 LEU A 161 GLU A 162 ARG A 260 SITE 2 AC2 10 DT D 8 DT D 9 DT D 10 HOH D 203 SITE 3 AC2 10 HOH D 205 HOH D 207 CRYST1 91.423 91.423 140.276 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007129 0.00000