PDB Short entry for 6SEF HEADER NUCLEAR PROTEIN 29-JUL-19 6SEF TITLE CLASS2C : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3-LIKE CENTROMERIC PROTEIN A; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: CENTROMERE AUTOANTIGEN A,CENTROMERE PROTEIN A,CENP-A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A TYPE 2-A; COMPND 12 CHAIN: C, G; COMPND 13 SYNONYM: HISTONE H2A.2,HISTONE H2A/O; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: HISTONE H2B TYPE 1-C/E/F/G/I; COMPND 17 CHAIN: D, H; COMPND 18 SYNONYM: HISTONE H2B.1 A,HISTONE H2B.A,H2B/A,HISTONE H2B.G,H2B/G, COMPND 19 HISTONE H2B.H,H2B/H,HISTONE H2B.K,H2B/K,HISTONE H2B.L,H2B/L; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: DNA (145-MER); COMPND 23 CHAIN: I; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: DNA (145-MER); COMPND 27 CHAIN: J; COMPND 28 ENGINEERED: YES; COMPND 29 MOL_ID: 7; COMPND 30 MOLECULE: CENTROMERE PROTEIN C; COMPND 31 CHAIN: V; COMPND 32 SYNONYM: CENP-C,CENTROMERE AUTOANTIGEN C,CENTROMERE PROTEIN C 1,CENP- COMPND 33 C 1,INTERPHASE CENTROMERE COMPLEX PROTEIN 7; COMPND 34 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CENPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 13 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 14 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 15 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 16 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: HIST2H2AA3, H2AFO, HIST2H2AA, HIST2H2AA4; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 GENE: HIST1H2BC, H2BFL, HIST1H2BE, H2BFH, HIST1H2BF, H2BFG, SOURCE 31 HIST1H2BG, H2BFA, HIST1H2BI, H2BFK; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 34 MOL_ID: 5; SOURCE 35 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 36 ORGANISM_TAXID: 32630; SOURCE 37 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 39 MOL_ID: 6; SOURCE 40 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 41 ORGANISM_TAXID: 32630; SOURCE 42 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 43 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 44 MOL_ID: 7; SOURCE 45 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 46 ORGANISM_COMMON: HUMAN; SOURCE 47 ORGANISM_TAXID: 9606; SOURCE 48 GENE: CENPC, CENPC1, ICEN7; SOURCE 49 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 50 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENP-A, NUCLEOSOME, CENTROMERE, CENTROMERIC CHROMATIN, NUCLEAR KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.ALI-AHMAD,S.BILOKAPIC,I.B.SCHAFER,M.HALIC,N.SEKULIC REVDAT 5 06-NOV-19 6SEF 1 REMARK REVDAT 4 23-OCT-19 6SEF 1 REMARK REVDAT 3 16-OCT-19 6SEF 1 JRNL REVDAT 2 11-SEP-19 6SEF 1 JRNL REVDAT 1 14-AUG-19 6SEF 0 JRNL AUTH A.ALI-AHMAD,S.BILOKAPIC,I.B.SCHAFER,M.HALIC,N.SEKULIC JRNL TITL CENP-C UNWRAPS THE HUMAN CENP-A NUCLEOSOME THROUGH THE H2A JRNL TITL 2 C-TERMINAL TAIL. JRNL REF EMBO REP. V. 20 48913 2019 JRNL REFN ESSN 1469-3178 JRNL PMID 31475439 JRNL DOI 10.15252/EMBR.201948913 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 40000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103570. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CENP-A NUCLEOSOME IN COMPLEX REMARK 245 WITH CENP-C CENTRAL REGION; REMARK 245 NUCLEOSOME; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: UNDECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: UNDECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 54290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -399.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 HIS A 38 REMARK 465 GLN A 39 REMARK 465 HIS A 40 REMARK 465 SER A 41 REMARK 465 GLY A 140 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 101 REMARK 465 GLY B 102 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 ALA C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 LYS C 15 REMARK 465 GLN C 112 REMARK 465 ALA C 113 REMARK 465 VAL C 114 REMARK 465 LEU C 115 REMARK 465 LEU C 116 REMARK 465 PRO C 117 REMARK 465 LYS C 118 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 LYS C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 LYS D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 THR D 19 REMARK 465 LYS D 20 REMARK 465 ALA D 21 REMARK 465 GLN D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 ASP D 25 REMARK 465 GLY D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 28 REMARK 465 ARG D 29 REMARK 465 LYS D 30 REMARK 465 ARG D 31 REMARK 465 SER D 32 REMARK 465 LYS D 125 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 PRO E 3 REMARK 465 ARG E 4 REMARK 465 ARG E 5 REMARK 465 ARG E 6 REMARK 465 SER E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 PRO E 10 REMARK 465 GLU E 11 REMARK 465 ALA E 12 REMARK 465 PRO E 13 REMARK 465 ARG E 14 REMARK 465 ARG E 15 REMARK 465 ARG E 16 REMARK 465 SER E 17 REMARK 465 PRO E 18 REMARK 465 SER E 19 REMARK 465 PRO E 20 REMARK 465 THR E 21 REMARK 465 PRO E 22 REMARK 465 THR E 23 REMARK 465 PRO E 24 REMARK 465 GLY E 25 REMARK 465 PRO E 26 REMARK 465 SER E 27 REMARK 465 ARG E 28 REMARK 465 ARG E 29 REMARK 465 GLY E 30 REMARK 465 PRO E 31 REMARK 465 SER E 32 REMARK 465 LEU E 33 REMARK 465 GLY E 34 REMARK 465 ALA E 35 REMARK 465 SER E 36 REMARK 465 SER E 37 REMARK 465 HIS E 38 REMARK 465 GLN E 39 REMARK 465 HIS E 40 REMARK 465 SER E 41 REMARK 465 GLY E 140 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 ASP F 24 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 ALA G 10 REMARK 465 VAL G 114 REMARK 465 LEU G 115 REMARK 465 LEU G 116 REMARK 465 PRO G 117 REMARK 465 LYS G 118 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 HIS G 123 REMARK 465 HIS G 124 REMARK 465 LYS G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 GLY G 128 REMARK 465 LYS G 129 REMARK 465 MET H 0 REMARK 465 PRO H 1 REMARK 465 GLU H 2 REMARK 465 PRO H 3 REMARK 465 ALA H 4 REMARK 465 LYS H 5 REMARK 465 SER H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 PRO H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 SER H 14 REMARK 465 LYS H 15 REMARK 465 LYS H 16 REMARK 465 ALA H 17 REMARK 465 VAL H 18 REMARK 465 THR H 19 REMARK 465 LYS H 20 REMARK 465 ALA H 21 REMARK 465 GLN H 22 REMARK 465 LYS H 23 REMARK 465 LYS H 24 REMARK 465 ASP H 25 REMARK 465 GLY H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 28 REMARK 465 ARG H 29 REMARK 465 LYS H 30 REMARK 465 ARG H 31 REMARK 465 SER H 32 REMARK 465 ARG H 33 REMARK 465 LYS H 34 REMARK 465 LYS H 125 REMARK 465 GLY V 414 REMARK 465 PRO V 415 REMARK 465 LEU V 416 REMARK 465 GLY V 417 REMARK 465 SER V 418 REMARK 465 PRO V 419 REMARK 465 GLU V 420 REMARK 465 PHE V 421 REMARK 465 GLY V 422 REMARK 465 ARG V 423 REMARK 465 ALA V 424 REMARK 465 THR V 425 REMARK 465 MET V 426 REMARK 465 ALA V 427 REMARK 465 LYS V 428 REMARK 465 PRO V 429 REMARK 465 ALA V 430 REMARK 465 GLU V 431 REMARK 465 GLU V 432 REMARK 465 GLN V 433 REMARK 465 LEU V 434 REMARK 465 ASP V 435 REMARK 465 VAL V 436 REMARK 465 GLY V 437 REMARK 465 GLN V 438 REMARK 465 SER V 439 REMARK 465 LYS V 440 REMARK 465 ASP V 441 REMARK 465 GLU V 442 REMARK 465 ASN V 443 REMARK 465 ILE V 444 REMARK 465 HIS V 445 REMARK 465 THR V 446 REMARK 465 SER V 447 REMARK 465 HIS V 448 REMARK 465 ILE V 449 REMARK 465 THR V 450 REMARK 465 GLN V 451 REMARK 465 ASP V 452 REMARK 465 GLU V 453 REMARK 465 PHE V 454 REMARK 465 GLN V 455 REMARK 465 ARG V 456 REMARK 465 ASN V 457 REMARK 465 SER V 458 REMARK 465 ASP V 459 REMARK 465 ARG V 460 REMARK 465 ASN V 461 REMARK 465 MET V 462 REMARK 465 GLU V 463 REMARK 465 GLU V 464 REMARK 465 HIS V 465 REMARK 465 GLU V 466 REMARK 465 GLU V 467 REMARK 465 MET V 468 REMARK 465 GLY V 469 REMARK 465 ASN V 470 REMARK 465 ASP V 471 REMARK 465 CYS V 472 REMARK 465 VAL V 473 REMARK 465 SER V 474 REMARK 465 LYS V 475 REMARK 465 LYS V 476 REMARK 465 GLN V 477 REMARK 465 MET V 478 REMARK 465 PRO V 479 REMARK 465 PRO V 480 REMARK 465 VAL V 481 REMARK 465 GLY V 482 REMARK 465 SER V 483 REMARK 465 LYS V 484 REMARK 465 LYS V 485 REMARK 465 SER V 486 REMARK 465 SER V 487 REMARK 465 THR V 488 REMARK 465 ARG V 489 REMARK 465 LYS V 490 REMARK 465 ASP V 491 REMARK 465 LYS V 492 REMARK 465 GLU V 493 REMARK 465 GLU V 494 REMARK 465 SER V 495 REMARK 465 LYS V 496 REMARK 465 LYS V 497 REMARK 465 LYS V 498 REMARK 465 ARG V 499 REMARK 465 PHE V 500 REMARK 465 SER V 501 REMARK 465 SER V 502 REMARK 465 GLU V 503 REMARK 465 SER V 504 REMARK 465 LYS V 505 REMARK 465 ASN V 506 REMARK 465 LYS V 507 REMARK 465 LEU V 508 REMARK 465 VAL V 509 REMARK 465 PRO V 510 REMARK 465 GLU V 511 REMARK 465 GLU V 512 REMARK 465 VAL V 513 REMARK 465 THR V 514 REMARK 465 SER V 515 REMARK 465 THR V 516 REMARK 465 VAL V 517 REMARK 465 THR V 518 REMARK 465 GLU V 537 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA I 16 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC I 21 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT I 43 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J -67 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J 5 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 15 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA J 16 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 45 49.18 38.22 REMARK 500 THR A 58 14.07 -145.20 REMARK 500 ARG A 80 12.25 57.26 REMARK 500 LEU C 97 79.64 -113.35 REMARK 500 LYS C 99 34.09 -97.62 REMARK 500 LYS F 44 -64.04 -95.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10154 RELATED DB: EMDB REMARK 900 CLASS2C : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION DBREF 6SEF A 1 140 UNP P49450 CENPA_HUMAN 1 140 DBREF 6SEF B 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 6SEF C 0 129 UNP Q6FI13 H2A2A_HUMAN 1 130 DBREF 6SEF D 0 125 UNP P62807 H2B1C_HUMAN 1 126 DBREF 6SEF E 1 140 UNP P49450 CENPA_HUMAN 1 140 DBREF 6SEF F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 6SEF G 0 129 UNP Q6FI13 H2A2A_HUMAN 1 130 DBREF 6SEF H 0 125 UNP P62807 H2B1C_HUMAN 1 126 DBREF 6SEF I -72 72 PDB 6SEF 6SEF -72 72 DBREF 6SEF J -72 72 PDB 6SEF 6SEF -72 72 DBREF 6SEF V 426 537 UNP Q03188 CENPC_HUMAN 426 537 SEQADV 6SEF GLY V 414 UNP Q03188 EXPRESSION TAG SEQADV 6SEF PRO V 415 UNP Q03188 EXPRESSION TAG SEQADV 6SEF LEU V 416 UNP Q03188 EXPRESSION TAG SEQADV 6SEF GLY V 417 UNP Q03188 EXPRESSION TAG SEQADV 6SEF SER V 418 UNP Q03188 EXPRESSION TAG SEQADV 6SEF PRO V 419 UNP Q03188 EXPRESSION TAG SEQADV 6SEF GLU V 420 UNP Q03188 EXPRESSION TAG SEQADV 6SEF PHE V 421 UNP Q03188 EXPRESSION TAG SEQADV 6SEF GLY V 422 UNP Q03188 EXPRESSION TAG SEQADV 6SEF ARG V 423 UNP Q03188 EXPRESSION TAG SEQADV 6SEF ALA V 424 UNP Q03188 EXPRESSION TAG SEQADV 6SEF THR V 425 UNP Q03188 EXPRESSION TAG SEQRES 1 A 140 MET GLY PRO ARG ARG ARG SER ARG LYS PRO GLU ALA PRO SEQRES 2 A 140 ARG ARG ARG SER PRO SER PRO THR PRO THR PRO GLY PRO SEQRES 3 A 140 SER ARG ARG GLY PRO SER LEU GLY ALA SER SER HIS GLN SEQRES 4 A 140 HIS SER ARG ARG ARG GLN GLY TRP LEU LYS GLU ILE ARG SEQRES 5 A 140 LYS LEU GLN LYS SER THR HIS LEU LEU ILE ARG LYS LEU SEQRES 6 A 140 PRO PHE SER ARG LEU ALA ARG GLU ILE CYS VAL LYS PHE SEQRES 7 A 140 THR ARG GLY VAL ASP PHE ASN TRP GLN ALA GLN ALA LEU SEQRES 8 A 140 LEU ALA LEU GLN GLU ALA ALA GLU ALA PHE LEU VAL HIS SEQRES 9 A 140 LEU PHE GLU ASP ALA TYR LEU LEU THR LEU HIS ALA GLY SEQRES 10 A 140 ARG VAL THR LEU PHE PRO LYS ASP VAL GLN LEU ALA ARG SEQRES 11 A 140 ARG ILE ARG GLY LEU GLU GLU GLY LEU GLY SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 C 130 LYS ALA LYS SER ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 C 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR MET SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 D 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER SER LYS SEQRES 1 E 140 MET GLY PRO ARG ARG ARG SER ARG LYS PRO GLU ALA PRO SEQRES 2 E 140 ARG ARG ARG SER PRO SER PRO THR PRO THR PRO GLY PRO SEQRES 3 E 140 SER ARG ARG GLY PRO SER LEU GLY ALA SER SER HIS GLN SEQRES 4 E 140 HIS SER ARG ARG ARG GLN GLY TRP LEU LYS GLU ILE ARG SEQRES 5 E 140 LYS LEU GLN LYS SER THR HIS LEU LEU ILE ARG LYS LEU SEQRES 6 E 140 PRO PHE SER ARG LEU ALA ARG GLU ILE CYS VAL LYS PHE SEQRES 7 E 140 THR ARG GLY VAL ASP PHE ASN TRP GLN ALA GLN ALA LEU SEQRES 8 E 140 LEU ALA LEU GLN GLU ALA ALA GLU ALA PHE LEU VAL HIS SEQRES 9 E 140 LEU PHE GLU ASP ALA TYR LEU LEU THR LEU HIS ALA GLY SEQRES 10 E 140 ARG VAL THR LEU PHE PRO LYS ASP VAL GLN LEU ALA ARG SEQRES 11 E 140 ARG ILE ARG GLY LEU GLU GLU GLY LEU GLY SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 G 130 LYS ALA LYS SER ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 G 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 G 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR MET SEQRES 5 G 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 G 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 G 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 G 130 GLU GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA SEQRES 9 G 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 G 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 H 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER SER LYS SEQRES 1 I 145 DA DT DC DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 145 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 145 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 145 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 145 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 145 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 145 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 145 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 145 DA DC DT DC DC DC DT DA DG DT DC DT DC SEQRES 10 I 145 DC DA DG DG DC DA DC DG DT DG DT DC DA SEQRES 11 I 145 DG DA DT DA DT DA DT DA DC DA DT DC DG SEQRES 12 I 145 DA DT SEQRES 1 J 145 DA DT DC DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 145 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 145 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 145 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 145 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 145 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 145 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 145 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 145 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 145 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 J 145 DC DA DC DC DG DG DG DA DT DT DC DT DG SEQRES 12 J 145 DA DT SEQRES 1 V 124 GLY PRO LEU GLY SER PRO GLU PHE GLY ARG ALA THR MET SEQRES 2 V 124 ALA LYS PRO ALA GLU GLU GLN LEU ASP VAL GLY GLN SER SEQRES 3 V 124 LYS ASP GLU ASN ILE HIS THR SER HIS ILE THR GLN ASP SEQRES 4 V 124 GLU PHE GLN ARG ASN SER ASP ARG ASN MET GLU GLU HIS SEQRES 5 V 124 GLU GLU MET GLY ASN ASP CYS VAL SER LYS LYS GLN MET SEQRES 6 V 124 PRO PRO VAL GLY SER LYS LYS SER SER THR ARG LYS ASP SEQRES 7 V 124 LYS GLU GLU SER LYS LYS LYS ARG PHE SER SER GLU SER SEQRES 8 V 124 LYS ASN LYS LEU VAL PRO GLU GLU VAL THR SER THR VAL SEQRES 9 V 124 THR LYS SER ARG ARG ILE SER ARG ARG PRO SER ASP TRP SEQRES 10 V 124 TRP VAL VAL LYS SER GLU GLU HELIX 1 AA1 GLY A 46 SER A 57 1 12 HELIX 2 AA2 LYS A 64 VAL A 76 1 13 HELIX 3 AA3 GLN A 87 ALA A 116 1 30 HELIX 4 AA4 PHE A 122 GLY A 134 1 13 HELIX 5 AA5 GLY A 134 LEU A 139 1 6 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLY B 94 1 13 HELIX 9 AA9 PRO C 26 GLY C 37 1 12 HELIX 10 AB1 ALA C 45 ASP C 72 1 28 HELIX 11 AB2 ILE C 79 ASP C 90 1 12 HELIX 12 AB3 ASP C 90 LEU C 97 1 8 HELIX 13 AB4 TYR D 37 HIS D 49 1 13 HELIX 14 AB5 SER D 55 ASN D 84 1 30 HELIX 15 AB6 THR D 90 LEU D 102 1 13 HELIX 16 AB7 PRO D 103 THR D 122 1 20 HELIX 17 AB8 GLY E 46 SER E 57 1 12 HELIX 18 AB9 ARG E 63 THR E 79 1 17 HELIX 19 AC1 GLN E 87 GLY E 117 1 31 HELIX 20 AC2 PHE E 122 GLY E 134 1 13 HELIX 21 AC3 ASN F 25 ILE F 29 5 5 HELIX 22 AC4 THR F 30 GLY F 41 1 12 HELIX 23 AC5 LEU F 49 GLU F 52 5 4 HELIX 24 AC6 GLU F 53 ALA F 76 1 24 HELIX 25 AC7 THR F 82 GLY F 94 1 13 HELIX 26 AC8 SER G 16 ALA G 21 1 6 HELIX 27 AC9 PRO G 26 GLY G 37 1 12 HELIX 28 AD1 GLY G 46 ASP G 72 1 27 HELIX 29 AD2 ILE G 79 ARG G 88 1 10 HELIX 30 AD3 ASP G 90 LEU G 97 1 8 HELIX 31 AD4 SER H 38 HIS H 49 1 12 HELIX 32 AD5 SER H 55 ASN H 84 1 30 HELIX 33 AD6 THR H 90 LEU H 102 1 13 HELIX 34 AD7 PRO H 103 THR H 122 1 20 SHEET 1 AA1 2 ASN A 85 TRP A 86 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ASN A 85 SHEET 1 AA2 2 THR A 120 LEU A 121 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N LEU A 121 SHEET 1 AA3 2 ARG C 42 VAL C 43 0 SHEET 2 AA3 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA4 2 ARG C 77 ILE C 78 0 SHEET 2 AA4 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA5 2 VAL C 100 ILE C 102 0 SHEET 2 AA5 2 THR F 96 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA6 2 ASN E 85 TRP E 86 0 SHEET 2 AA6 2 THR F 80 VAL F 81 1 O VAL F 81 N ASN E 85 SHEET 1 AA7 2 THR E 120 LEU E 121 0 SHEET 2 AA7 2 ARG F 45 ILE F 46 1 O ARG F 45 N LEU E 121 SHEET 1 AA8 2 ARG G 42 VAL G 43 0 SHEET 2 AA8 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AA9 2 ARG G 77 ILE G 78 0 SHEET 2 AA9 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000