PDB Short entry for 6SXB HEADER DNA BINDING PROTEIN 25-SEP-19 6SXB TITLE XPF-ERCC1 CRYO-EM STRUCTURE, DNA-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR ENDONUCLEASE XPF; COMPND 3 CHAIN: F; COMPND 4 SYNONYM: DNA EXCISION REPAIR PROTEIN ERCC-4,DNA REPAIR PROTEIN COMPND 5 COMPLEMENTING XP-F CELLS,XERODERMA PIGMENTOSUM GROUP F-COMPLEMENTING COMPND 6 PROTEIN; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: SOME RESIDUES HAVE BEEN MODELLED AS ALANINE WHERE COMPND 10 SIDECHAINS WERE NOT VISIBLE.; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: DNA EXCISION REPAIR PROTEIN ERCC-1; COMPND 13 CHAIN: G; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: SOME RESIDUES MODELLED AS ALANINE WHERE NO SIDECHAIN COMPND 16 INFORMATION AVAILABLE.; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: DNA (5'-D(P*CP*AP*GP*AP*TP*GP*CP*TP*GP*A)-3'); COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: DNA (5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*TP*G)-3'); COMPND 23 CHAIN: D; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERCC4, ERCC11, XPF; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ERCC1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606 KEYWDS DNA REPAIR ENZYME. NUCLEOTIDE EXCISION REPAIR, DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.L.JONES,D.C.BRIGGS,N.Q.MCDONALD REVDAT 1 11-MAR-20 6SXB 0 JRNL AUTH M.JONES,F.BEURON,A.BORG,A.NANS,C.P.EARL,D.C.BRIGGS, JRNL AUTH 2 A.P.SNIJDERS,M.BOWLES,E.P.MORRIS,M.LINCH,N.Q.MCDONALD JRNL TITL CRYO-EM STRUCTURES OF THE XPF-ERCC1 ENDONUCLEASE REVEAL HOW JRNL TITL 2 DNA-JUNCTION ENGAGEMENT DISRUPTS AN AUTO-INHIBITED JRNL TITL 3 CONFORMATION. JRNL REF NAT COMMUN V. 11 1120 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32111838 JRNL DOI 10.1038/S41467-020-14856-2 REMARK 2 REMARK 2 RESOLUTION. 7.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.900 REMARK 3 NUMBER OF PARTICLES : 198212 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104492. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 2D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ERCC1/XPF/DNA COMPLEX; REMARK 245 ERCC1/XPF; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 15315 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 63.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 465 SER F 3 REMARK 465 GLY F 4 REMARK 465 GLN F 5 REMARK 465 PRO F 6 REMARK 465 ALA F 7 REMARK 465 ARG F 8 REMARK 465 VAL F 343 REMARK 465 TYR F 344 REMARK 465 HIS F 345 REMARK 465 LEU F 346 REMARK 465 PRO F 347 REMARK 465 ASP F 348 REMARK 465 ALA F 349 REMARK 465 LYS F 350 REMARK 465 MET F 351 REMARK 465 SER F 352 REMARK 465 LYS F 353 REMARK 465 LYS F 354 REMARK 465 GLU F 355 REMARK 465 LYS F 356 REMARK 465 ILE F 357 REMARK 465 SER F 358 REMARK 465 GLU F 359 REMARK 465 LYS F 360 REMARK 465 MET F 361 REMARK 465 GLU F 362 REMARK 465 ILE F 363 REMARK 465 LYS F 364 REMARK 465 GLU F 365 REMARK 465 GLY F 366 REMARK 465 GLU F 367 REMARK 465 GLU F 368 REMARK 465 THR F 369 REMARK 465 LYS F 370 REMARK 465 LYS F 371 REMARK 465 GLU F 372 REMARK 465 LEU F 373 REMARK 465 VAL F 374 REMARK 465 GLU F 441 REMARK 465 LYS F 442 REMARK 465 ASP F 443 REMARK 465 SER F 444 REMARK 465 LYS F 445 REMARK 465 ALA F 446 REMARK 465 GLU F 447 REMARK 465 GLU F 448 REMARK 465 VAL F 449 REMARK 465 TRP F 450 REMARK 465 MET F 451 REMARK 465 LYS F 452 REMARK 465 PHE F 453 REMARK 465 ARG F 454 REMARK 465 LYS F 455 REMARK 465 GLU F 456 REMARK 465 ASP F 457 REMARK 465 SER F 458 REMARK 465 SER F 459 REMARK 465 LYS F 460 REMARK 465 ARG F 461 REMARK 465 ILE F 462 REMARK 465 ARG F 463 REMARK 465 LYS F 464 REMARK 465 SER F 465 REMARK 465 HIS F 466 REMARK 465 LYS F 467 REMARK 465 ARG F 468 REMARK 465 PRO F 469 REMARK 465 LYS F 470 REMARK 465 ASP F 471 REMARK 465 PRO F 472 REMARK 465 GLN F 473 REMARK 465 ASN F 474 REMARK 465 LYS F 475 REMARK 465 GLU F 476 REMARK 465 ARG F 477 REMARK 465 ALA F 478 REMARK 465 SER F 479 REMARK 465 THR F 480 REMARK 465 LYS F 481 REMARK 465 GLU F 482 REMARK 465 ARG F 483 REMARK 465 THR F 484 REMARK 465 LEU F 485 REMARK 465 LYS F 486 REMARK 465 LYS F 487 REMARK 465 LYS F 488 REMARK 465 LYS F 489 REMARK 465 ARG F 490 REMARK 465 LYS F 491 REMARK 465 LEU F 492 REMARK 465 THR F 493 REMARK 465 LEU F 494 REMARK 465 THR F 495 REMARK 465 GLN F 496 REMARK 465 MET F 497 REMARK 465 VAL F 498 REMARK 465 GLY F 499 REMARK 465 LYS F 500 REMARK 465 PRO F 501 REMARK 465 GLU F 502 REMARK 465 GLU F 503 REMARK 465 LEU F 504 REMARK 465 GLU F 505 REMARK 465 GLU F 506 REMARK 465 GLU F 507 REMARK 465 GLY F 508 REMARK 465 ASP F 509 REMARK 465 VAL F 510 REMARK 465 GLU F 511 REMARK 465 GLU F 512 REMARK 465 GLY F 513 REMARK 465 TYR F 514 REMARK 465 ARG F 515 REMARK 465 ARG F 516 REMARK 465 GLU F 517 REMARK 465 ILE F 518 REMARK 465 SER F 519 REMARK 465 SER F 520 REMARK 465 SER F 521 REMARK 465 PRO F 522 REMARK 465 GLU F 523 REMARK 465 SER F 524 REMARK 465 CYS F 525 REMARK 465 PRO F 526 REMARK 465 GLU F 527 REMARK 465 GLU F 528 REMARK 465 ILE F 529 REMARK 465 LYS F 530 REMARK 465 HIS F 531 REMARK 465 GLU F 532 REMARK 465 GLU F 533 REMARK 465 PHE F 534 REMARK 465 ASP F 535 REMARK 465 VAL F 536 REMARK 465 ASN F 537 REMARK 465 LEU F 538 REMARK 465 SER F 539 REMARK 465 SER F 540 REMARK 465 ASP F 541 REMARK 465 ALA F 542 REMARK 465 ALA F 543 REMARK 465 PHE F 544 REMARK 465 GLY F 545 REMARK 465 ILE F 546 REMARK 465 LEU F 547 REMARK 465 LYS F 548 REMARK 465 GLU F 549 REMARK 465 PRO F 550 REMARK 465 VAL F 641 REMARK 465 VAL F 642 REMARK 465 PRO F 643 REMARK 465 GLU F 644 REMARK 465 GLU F 645 REMARK 465 ARG F 646 REMARK 465 GLU F 647 REMARK 465 GLY F 648 REMARK 465 ARG F 649 REMARK 465 ASP F 650 REMARK 465 GLU F 651 REMARK 465 THR F 652 REMARK 465 ASN F 653 REMARK 465 LEU F 654 REMARK 465 ASP F 655 REMARK 465 LEU F 656 REMARK 465 VAL F 657 REMARK 465 ARG F 658 REMARK 465 GLY F 659 REMARK 465 THR F 660 REMARK 465 ALA F 661 REMARK 465 SER F 662 REMARK 465 ALA F 663 REMARK 465 ASP F 664 REMARK 465 VAL F 665 REMARK 465 SER F 666 REMARK 465 THR F 667 REMARK 465 ASP F 668 REMARK 465 THR F 669 REMARK 465 ARG F 670 REMARK 465 LYS F 671 REMARK 465 ALA F 672 REMARK 465 GLY F 673 REMARK 465 GLY F 674 REMARK 465 GLN F 675 REMARK 465 GLU F 676 REMARK 465 GLN F 677 REMARK 465 ASN F 678 REMARK 465 GLY F 679 REMARK 465 LEU F 829 REMARK 465 ALA F 830 REMARK 465 ILE F 831 REMARK 465 THR F 832 REMARK 465 ALA F 833 REMARK 465 ASP F 834 REMARK 465 SER F 835 REMARK 465 GLU F 836 REMARK 465 THR F 837 REMARK 465 LEU F 838 REMARK 465 PRO F 839 REMARK 465 GLU F 840 REMARK 465 SER F 841 REMARK 465 GLU F 842 REMARK 465 LYS F 843 REMARK 465 TYR F 844 REMARK 465 GLU F 907 REMARK 465 VAL F 908 REMARK 465 VAL F 909 REMARK 465 SER F 910 REMARK 465 LYS F 911 REMARK 465 GLY F 912 REMARK 465 LYS F 913 REMARK 465 GLY F 914 REMARK 465 LYS F 915 REMARK 465 LYS F 916 REMARK 465 MET G 1 REMARK 465 ASP G 2 REMARK 465 PRO G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 ASP G 6 REMARK 465 LYS G 7 REMARK 465 GLU G 8 REMARK 465 GLY G 9 REMARK 465 VAL G 10 REMARK 465 PRO G 11 REMARK 465 GLN G 12 REMARK 465 PRO G 13 REMARK 465 SER G 14 REMARK 465 GLY G 15 REMARK 465 PRO G 16 REMARK 465 PRO G 17 REMARK 465 ALA G 18 REMARK 465 ARG G 19 REMARK 465 LYS G 20 REMARK 465 LYS G 21 REMARK 465 PHE G 22 REMARK 465 VAL G 23 REMARK 465 ILE G 24 REMARK 465 PRO G 25 REMARK 465 LEU G 26 REMARK 465 ASP G 27 REMARK 465 GLU G 28 REMARK 465 ASP G 29 REMARK 465 GLU G 30 REMARK 465 VAL G 31 REMARK 465 PRO G 32 REMARK 465 PRO G 33 REMARK 465 GLY G 34 REMARK 465 VAL G 35 REMARK 465 ALA G 36 REMARK 465 LYS G 37 REMARK 465 PRO G 38 REMARK 465 LEU G 39 REMARK 465 PHE G 40 REMARK 465 ARG G 41 REMARK 465 SER G 42 REMARK 465 THR G 43 REMARK 465 GLN G 44 REMARK 465 SER G 45 REMARK 465 LEU G 46 REMARK 465 PRO G 47 REMARK 465 THR G 48 REMARK 465 VAL G 49 REMARK 465 ASP G 50 REMARK 465 THR G 51 REMARK 465 SER G 52 REMARK 465 ALA G 53 REMARK 465 GLN G 54 REMARK 465 ALA G 55 REMARK 465 ALA G 56 REMARK 465 PRO G 57 REMARK 465 GLN G 58 REMARK 465 THR G 59 REMARK 465 TYR G 60 REMARK 465 ALA G 61 REMARK 465 GLU G 62 REMARK 465 TYR G 63 REMARK 465 ALA G 64 REMARK 465 ILE G 65 REMARK 465 SER G 66 REMARK 465 GLN G 67 REMARK 465 PRO G 68 REMARK 465 LEU G 69 REMARK 465 GLU G 70 REMARK 465 GLY G 71 REMARK 465 ALA G 72 REMARK 465 GLY G 73 REMARK 465 ALA G 74 REMARK 465 THR G 75 REMARK 465 CYS G 76 REMARK 465 PRO G 77 REMARK 465 THR G 78 REMARK 465 GLY G 79 REMARK 465 SER G 80 REMARK 465 GLU G 81 REMARK 465 PRO G 82 REMARK 465 LEU G 83 REMARK 465 ALA G 84 REMARK 465 GLY G 85 REMARK 465 GLU G 86 REMARK 465 THR G 87 REMARK 465 PRO G 88 REMARK 465 ASN G 89 REMARK 465 GLN G 90 REMARK 465 ALA G 91 REMARK 465 LEU G 92 REMARK 465 LYS G 93 REMARK 465 PRO G 94 REMARK 465 GLY G 95 REMARK 465 ALA G 96 REMARK 465 LYS G 97 REMARK 465 SER G 98 REMARK 465 ASN G 99 REMARK 465 LEU G 223 REMARK 465 MET G 224 REMARK 465 GLU G 225 REMARK 465 LYS G 226 REMARK 465 LEU G 227 REMARK 465 GLU G 228 REMARK 465 GLN G 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG F 9 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 69 CG CD OE1 OE2 REMARK 470 ASN F 156 CG OD1 ND2 REMARK 470 LYS F 157 CG CD CE NZ REMARK 470 ARG F 158 CG CD NE CZ NH1 NH2 REMARK 470 ASP F 172 CG OD1 OD2 REMARK 470 PHE F 175 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS F 176 SG REMARK 470 HIS F 177 CG ND1 CD2 CE1 NE2 REMARK 470 HIS F 197 CG ND1 CD2 CE1 NE2 REMARK 470 GLN F 206 CG CD OE1 NE2 REMARK 470 GLU F 210 CG CD OE1 OE2 REMARK 470 MET F 218 CG SD CE REMARK 470 LEU F 247 CG CD1 CD2 REMARK 470 GLU F 250 CG CD OE1 OE2 REMARK 470 ASP F 251 CG OD1 OD2 REMARK 470 LEU F 252 CG CD1 CD2 REMARK 470 SER F 253 OG REMARK 470 LEU F 254 CG CD1 CD2 REMARK 470 LYS F 260 CG CD CE NZ REMARK 470 GLN F 276 CG CD OE1 NE2 REMARK 470 LYS F 318 CG CD CE NZ REMARK 470 GLN F 322 CG CD OE1 NE2 REMARK 470 ASN F 323 CG OD1 ND2 REMARK 470 ASP F 330 CG OD1 OD2 REMARK 470 SER F 331 OG REMARK 470 LYS F 380 CG CD CE NZ REMARK 470 LYS F 396 CG CD CE NZ REMARK 470 GLU F 397 CG CD OE1 OE2 REMARK 470 SER F 398 OG REMARK 470 GLU F 399 CG CD OE1 OE2 REMARK 470 LEU F 401 CG CD1 CD2 REMARK 470 PHE F 440 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU F 551 CG CD1 CD2 REMARK 470 ASP F 582 CG OD1 OD2 REMARK 470 ARG F 595 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 598 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 601 CG CD CE NZ REMARK 470 MET F 640 CG SD CE REMARK 470 THR F 680 OG1 CG2 REMARK 470 GLU F 721 CG CD OE1 OE2 REMARK 470 LYS F 765 CG CD CE NZ REMARK 470 SER F 771 OG REMARK 470 ARG F 772 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 775 CG CD1 CD2 REMARK 470 PHE F 776 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN F 777 CG CD OE1 NE2 REMARK 470 GLU F 778 CG CD OE1 OE2 REMARK 470 ILE F 779 CG1 CG2 CD1 REMARK 470 SER F 780 OG REMARK 470 SER F 805 OG REMARK 470 LYS F 820 CG CD CE NZ REMARK 470 ASP F 824 CG OD1 OD2 REMARK 470 ASN F 845 CG OD1 ND2 REMARK 470 ARG G 108 CG CD NE CZ NH1 NH2 REMARK 470 PHE G 293 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU G 294 CG CD1 CD2 REMARK 470 LYS G 295 CG CD CE NZ REMARK 470 VAL G 296 CG1 CG2 REMARK 470 PRO G 297 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER F 125 -169.56 -78.83 REMARK 500 ASN F 244 84.64 -156.83 REMARK 500 ILE F 779 59.03 -93.74 REMARK 500 ARG F 797 54.49 -92.14 REMARK 500 GLN G 107 57.68 -91.08 REMARK 500 ASP G 151 57.75 -93.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10338 RELATED DB: EMDB REMARK 900 XPF-ERCC1 CRYO-EM STRUCTURE, DNA-BOUND FORM DBREF 6SXB F 1 916 UNP Q92889 XPF_HUMAN 1 916 DBREF 6SXB G 1 297 UNP P07992 ERCC1_HUMAN 1 297 DBREF 6SXB C 6 15 PDB 6SXB 6SXB 6 15 DBREF 6SXB D 1 10 PDB 6SXB 6SXB 1 10 SEQRES 1 F 916 MET GLU SER GLY GLN PRO ALA ARG ARG ILE ALA MET ALA SEQRES 2 F 916 PRO LEU LEU GLU TYR GLU ARG GLN LEU VAL LEU GLU LEU SEQRES 3 F 916 LEU ASP THR ASP GLY LEU VAL VAL CYS ALA ARG GLY LEU SEQRES 4 F 916 GLY ALA ASP ARG LEU LEU TYR HIS PHE LEU GLN LEU HIS SEQRES 5 F 916 CYS HIS PRO ALA CYS LEU VAL LEU VAL LEU ASN THR GLN SEQRES 6 F 916 PRO ALA GLU GLU GLU TYR PHE ILE ASN GLN LEU LYS ILE SEQRES 7 F 916 GLU GLY VAL GLU HIS LEU PRO ARG ARG VAL THR ASN GLU SEQRES 8 F 916 ILE THR SER ASN SER ARG TYR GLU VAL TYR THR GLN GLY SEQRES 9 F 916 GLY VAL ILE PHE ALA THR SER ARG ILE LEU VAL VAL ASP SEQRES 10 F 916 PHE LEU THR ASP ARG ILE PRO SER ASP LEU ILE THR GLY SEQRES 11 F 916 ILE LEU VAL TYR ARG ALA HIS ARG ILE ILE GLU SER CYS SEQRES 12 F 916 GLN GLU ALA PHE ILE LEU ARG LEU PHE ARG GLN LYS ASN SEQRES 13 F 916 LYS ARG GLY PHE ILE LYS ALA PHE THR ASP ASN ALA VAL SEQRES 14 F 916 ALA PHE ASP THR GLY PHE CYS HIS VAL GLU ARG VAL MET SEQRES 15 F 916 ARG ASN LEU PHE VAL ARG LYS LEU TYR LEU TRP PRO ARG SEQRES 16 F 916 PHE HIS VAL ALA VAL ASN SER PHE LEU GLU GLN HIS LYS SEQRES 17 F 916 PRO GLU VAL VAL GLU ILE HIS VAL SER MET THR PRO THR SEQRES 18 F 916 MET LEU ALA ILE GLN THR ALA ILE LEU ASP ILE LEU ASN SEQRES 19 F 916 ALA CYS LEU LYS GLU LEU LYS CYS HIS ASN PRO SER LEU SEQRES 20 F 916 GLU VAL GLU ASP LEU SER LEU GLU ASN ALA ILE GLY LYS SEQRES 21 F 916 PRO PHE ASP LYS THR ILE ARG HIS TYR LEU ASP PRO LEU SEQRES 22 F 916 TRP HIS GLN LEU GLY ALA LYS THR LYS SER LEU VAL GLN SEQRES 23 F 916 ASP LEU LYS ILE LEU ARG THR LEU LEU GLN TYR LEU SER SEQRES 24 F 916 GLN TYR ASP CYS VAL THR PHE LEU ASN LEU LEU GLU SER SEQRES 25 F 916 LEU ARG ALA THR GLU LYS ALA PHE GLY GLN ASN SER GLY SEQRES 26 F 916 TRP LEU PHE LEU ASP SER SER THR SER MET PHE ILE ASN SEQRES 27 F 916 ALA ARG ALA ARG VAL TYR HIS LEU PRO ASP ALA LYS MET SEQRES 28 F 916 SER LYS LYS GLU LYS ILE SER GLU LYS MET GLU ILE LYS SEQRES 29 F 916 GLU GLY GLU GLU THR LYS LYS GLU LEU VAL LEU GLU SER SEQRES 30 F 916 ASN PRO LYS TRP GLU ALA LEU THR GLU VAL LEU LYS GLU SEQRES 31 F 916 ILE GLU ALA GLU ASN LYS GLU SER GLU ALA LEU GLY GLY SEQRES 32 F 916 PRO GLY GLN VAL LEU ILE CYS ALA SER ASP ASP ARG THR SEQRES 33 F 916 CYS SER GLN LEU ARG ASP TYR ILE THR LEU GLY ALA GLU SEQRES 34 F 916 ALA PHE LEU LEU ARG LEU TYR ARG LYS THR PHE GLU LYS SEQRES 35 F 916 ASP SER LYS ALA GLU GLU VAL TRP MET LYS PHE ARG LYS SEQRES 36 F 916 GLU ASP SER SER LYS ARG ILE ARG LYS SER HIS LYS ARG SEQRES 37 F 916 PRO LYS ASP PRO GLN ASN LYS GLU ARG ALA SER THR LYS SEQRES 38 F 916 GLU ARG THR LEU LYS LYS LYS LYS ARG LYS LEU THR LEU SEQRES 39 F 916 THR GLN MET VAL GLY LYS PRO GLU GLU LEU GLU GLU GLU SEQRES 40 F 916 GLY ASP VAL GLU GLU GLY TYR ARG ARG GLU ILE SER SER SEQRES 41 F 916 SER PRO GLU SER CYS PRO GLU GLU ILE LYS HIS GLU GLU SEQRES 42 F 916 PHE ASP VAL ASN LEU SER SER ASP ALA ALA PHE GLY ILE SEQRES 43 F 916 LEU LYS GLU PRO LEU THR ILE ILE HIS PRO LEU LEU GLY SEQRES 44 F 916 CYS SER ASP PRO TYR ALA LEU THR ARG VAL LEU HIS GLU SEQRES 45 F 916 VAL GLU PRO ARG TYR VAL VAL LEU TYR ASP ALA GLU LEU SEQRES 46 F 916 THR PHE VAL ARG GLN LEU GLU ILE TYR ARG ALA SER ARG SEQRES 47 F 916 PRO GLY LYS PRO LEU ARG VAL TYR PHE LEU ILE TYR GLY SEQRES 48 F 916 GLY SER THR GLU GLU GLN ARG TYR LEU THR ALA LEU ARG SEQRES 49 F 916 LYS GLU LYS GLU ALA PHE GLU LYS LEU ILE ARG GLU LYS SEQRES 50 F 916 ALA SER MET VAL VAL PRO GLU GLU ARG GLU GLY ARG ASP SEQRES 51 F 916 GLU THR ASN LEU ASP LEU VAL ARG GLY THR ALA SER ALA SEQRES 52 F 916 ASP VAL SER THR ASP THR ARG LYS ALA GLY GLY GLN GLU SEQRES 53 F 916 GLN ASN GLY THR GLN GLN SER ILE VAL VAL ASP MET ARG SEQRES 54 F 916 GLU PHE ARG SER GLU LEU PRO SER LEU ILE HIS ARG ARG SEQRES 55 F 916 GLY ILE ASP ILE GLU PRO VAL THR LEU GLU VAL GLY ASP SEQRES 56 F 916 TYR ILE LEU THR PRO GLU MET CYS VAL GLU ARG LYS SER SEQRES 57 F 916 ILE SER ASP LEU ILE GLY SER LEU ASN ASN GLY ARG LEU SEQRES 58 F 916 TYR SER GLN CYS ILE SER MET SER ARG TYR TYR LYS ARG SEQRES 59 F 916 PRO VAL LEU LEU ILE GLU PHE ASP PRO SER LYS PRO PHE SEQRES 60 F 916 SER LEU THR SER ARG GLY ALA LEU PHE GLN GLU ILE SER SEQRES 61 F 916 SER ASN ASP ILE SER SER LYS LEU THR LEU LEU THR LEU SEQRES 62 F 916 HIS PHE PRO ARG LEU ARG ILE LEU TRP CYS PRO SER PRO SEQRES 63 F 916 HIS ALA THR ALA GLU LEU PHE GLU GLU LEU LYS GLN SER SEQRES 64 F 916 LYS PRO GLN PRO ASP ALA ALA THR ALA LEU ALA ILE THR SEQRES 65 F 916 ALA ASP SER GLU THR LEU PRO GLU SER GLU LYS TYR ASN SEQRES 66 F 916 PRO GLY PRO GLN ASP PHE LEU LEU LYS MET PRO GLY VAL SEQRES 67 F 916 ASN ALA LYS ASN CYS ARG SER LEU MET HIS HIS VAL LYS SEQRES 68 F 916 ASN ILE ALA GLU LEU ALA ALA LEU SER GLN ASP GLU LEU SEQRES 69 F 916 THR SER ILE LEU GLY ASN ALA ALA ASN ALA LYS GLN LEU SEQRES 70 F 916 TYR ASP PHE ILE HIS THR SER PHE ALA GLU VAL VAL SER SEQRES 71 F 916 LYS GLY LYS GLY LYS LYS SEQRES 1 G 297 MET ASP PRO GLY LYS ASP LYS GLU GLY VAL PRO GLN PRO SEQRES 2 G 297 SER GLY PRO PRO ALA ARG LYS LYS PHE VAL ILE PRO LEU SEQRES 3 G 297 ASP GLU ASP GLU VAL PRO PRO GLY VAL ALA LYS PRO LEU SEQRES 4 G 297 PHE ARG SER THR GLN SER LEU PRO THR VAL ASP THR SER SEQRES 5 G 297 ALA GLN ALA ALA PRO GLN THR TYR ALA GLU TYR ALA ILE SEQRES 6 G 297 SER GLN PRO LEU GLU GLY ALA GLY ALA THR CYS PRO THR SEQRES 7 G 297 GLY SER GLU PRO LEU ALA GLY GLU THR PRO ASN GLN ALA SEQRES 8 G 297 LEU LYS PRO GLY ALA LYS SER ASN SER ILE ILE VAL SER SEQRES 9 G 297 PRO ARG GLN ARG GLY ASN PRO VAL LEU LYS PHE VAL ARG SEQRES 10 G 297 ASN VAL PRO TRP GLU PHE GLY ASP VAL ILE PRO ASP TYR SEQRES 11 G 297 VAL LEU GLY GLN SER THR CYS ALA LEU PHE LEU SER LEU SEQRES 12 G 297 ARG TYR HIS ASN LEU HIS PRO ASP TYR ILE HIS GLY ARG SEQRES 13 G 297 LEU GLN SER LEU GLY LYS ASN PHE ALA LEU ARG VAL LEU SEQRES 14 G 297 LEU VAL GLN VAL ASP VAL LYS ASP PRO GLN GLN ALA LEU SEQRES 15 G 297 LYS GLU LEU ALA LYS MET CYS ILE LEU ALA ASP CYS THR SEQRES 16 G 297 LEU ILE LEU ALA TRP SER PRO GLU GLU ALA GLY ARG TYR SEQRES 17 G 297 LEU GLU THR TYR LYS ALA TYR GLU GLN LYS PRO ALA ASP SEQRES 18 G 297 LEU LEU MET GLU LYS LEU GLU GLN ASP PHE VAL SER ARG SEQRES 19 G 297 VAL THR GLU CYS LEU THR THR VAL LYS SER VAL ASN LYS SEQRES 20 G 297 THR ASP SER GLN THR LEU LEU THR THR PHE GLY SER LEU SEQRES 21 G 297 GLU GLN LEU ILE ALA ALA SER ARG GLU ASP LEU ALA LEU SEQRES 22 G 297 CYS PRO GLY LEU GLY PRO GLN LYS ALA ARG ARG LEU PHE SEQRES 23 G 297 ASP VAL LEU HIS GLU PRO PHE LEU LYS VAL PRO SEQRES 1 C 10 DC DA DG DA DT DG DC DT DG DA SEQRES 1 D 10 DT DC DA DG DC DA DT DC DT DG HELIX 1 AA1 GLU F 19 LEU F 27 1 9 HELIX 2 AA2 GLY F 40 HIS F 52 1 13 HELIX 3 AA3 GLN F 65 GLY F 80 1 16 HELIX 4 AA4 SER F 96 TYR F 101 1 6 HELIX 5 AA5 ARG F 112 THR F 120 1 9 HELIX 6 AA6 ALA F 136 ILE F 139 5 4 HELIX 7 AA7 GLN F 144 ARG F 153 1 10 HELIX 8 AA8 ASN F 167 PHE F 171 5 5 HELIX 9 AA9 HIS F 177 ASN F 184 1 8 HELIX 10 AB1 HIS F 197 LEU F 204 1 8 HELIX 11 AB2 THR F 219 HIS F 243 1 25 HELIX 12 AB3 LEU F 254 GLY F 259 1 6 HELIX 13 AB4 PHE F 262 LEU F 270 1 9 HELIX 14 AB5 GLY F 278 TYR F 301 1 24 HELIX 15 AB6 CYS F 303 LEU F 309 1 7 HELIX 16 AB7 LEU F 310 GLY F 321 1 12 HELIX 17 AB8 GLY F 325 LEU F 329 5 5 HELIX 18 AB9 THR F 333 ARG F 342 1 10 HELIX 19 AC1 ASN F 378 SER F 398 1 21 HELIX 20 AC2 ASP F 413 GLY F 427 1 15 HELIX 21 AC3 ALA F 428 THR F 439 1 12 HELIX 22 AC4 ASP F 562 VAL F 573 1 12 HELIX 23 AC5 ALA F 583 SER F 597 1 15 HELIX 24 AC6 SER F 613 ALA F 638 1 26 HELIX 25 AC7 MET F 688 PHE F 691 5 4 HELIX 26 AC8 GLU F 694 HIS F 700 1 7 HELIX 27 AC9 SER F 730 GLY F 739 1 10 HELIX 28 AD1 GLY F 739 SER F 749 1 11 HELIX 29 AD2 ASP F 783 PHE F 795 1 13 HELIX 30 AD3 SER F 805 LEU F 816 1 12 HELIX 31 AD4 PRO F 846 LYS F 854 1 9 HELIX 32 AD5 ASN F 859 HIS F 868 1 10 HELIX 33 AD6 ILE F 873 LEU F 879 1 7 HELIX 34 AD7 SER F 880 GLY F 889 1 10 HELIX 35 AD8 ASN F 890 HIS F 902 1 13 HELIX 36 AD9 LEU G 143 HIS G 149 1 7 HELIX 37 AE1 TYR G 152 GLY G 161 1 10 HELIX 38 AE2 GLN G 180 ALA G 192 1 13 HELIX 39 AE3 SER G 201 ALA G 214 1 14 HELIX 40 AE4 PHE G 231 LEU G 239 1 9 HELIX 41 AE5 ASN G 246 PHE G 257 1 12 HELIX 42 AE6 SER G 259 ALA G 266 1 8 HELIX 43 AE7 ARG G 268 ALA G 272 5 5 HELIX 44 AE8 GLY G 278 GLU G 291 1 14 SHEET 1 AA1 7 ARG F 86 ARG F 87 0 SHEET 2 AA1 7 GLY F 105 PHE F 108 1 O PHE F 108 N ARG F 86 SHEET 3 AA1 7 LEU F 58 VAL F 61 1 N VAL F 61 O ILE F 107 SHEET 4 AA1 7 GLY F 130 TYR F 134 1 O LEU F 132 N LEU F 60 SHEET 5 AA1 7 PHE F 160 THR F 165 1 O LYS F 162 N VAL F 133 SHEET 6 AA1 7 GLY F 31 VAL F 34 1 N VAL F 33 O THR F 165 SHEET 7 AA1 7 LYS F 189 LEU F 190 1 O LYS F 189 N LEU F 32 SHEET 1 AA2 5 GLU F 210 VAL F 216 0 SHEET 2 AA2 5 ARG F 604 TYR F 610 1 O VAL F 605 N VAL F 212 SHEET 3 AA2 5 TYR F 577 VAL F 579 1 N VAL F 578 O TYR F 606 SHEET 4 AA2 5 LEU F 408 ALA F 411 1 N LEU F 408 O VAL F 579 SHEET 5 AA2 5 ILE F 553 PRO F 556 1 O HIS F 555 N ILE F 409 SHEET 1 AA3 5 VAL F 685 VAL F 686 0 SHEET 2 AA3 5 TYR F 716 THR F 719 -1 O ILE F 717 N VAL F 685 SHEET 3 AA3 5 MET F 722 LYS F 727 -1 O VAL F 724 N TYR F 716 SHEET 4 AA3 5 ARG F 754 GLU F 760 1 O LEU F 758 N GLU F 725 SHEET 5 AA3 5 ILE F 800 CYS F 803 1 O LEU F 801 N ILE F 759 SHEET 1 AA4 6 TRP G 121 PHE G 123 0 SHEET 2 AA4 6 ILE G 101 VAL G 103 1 N VAL G 103 O GLU G 122 SHEET 3 AA4 6 TYR G 130 VAL G 131 -1 O VAL G 131 N ILE G 102 SHEET 4 AA4 6 THR G 136 SER G 142 -1 O ALA G 138 N TYR G 130 SHEET 5 AA4 6 LEU G 166 GLN G 172 1 O VAL G 168 N CYS G 137 SHEET 6 AA4 6 THR G 195 ALA G 199 1 O ILE G 197 N VAL G 171 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000