PDB Short entry for 6TAA HEADER HYDROLASE(O-GLYCOSYL) 21-AUG-92 6TAA TITLE STRUCTURE AND MOLECULAR MODEL REFINEMENT OF ASPERGILLUS TITLE 2 ORYZAE (TAKA) ALPHA-AMYLASE: AN APPLICATION OF THE TITLE 3 SIMULATED-ANNEALING METHOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_TAXID: 5062 KEYWDS HYDROLASE(O-GLYCOSYL) EXPDTA X-RAY DIFFRACTION AUTHOR H.J.SWIFT,L.BRADY,Z.S.DEREWENDA,E.J.DODSON,J.P.TURKENBURG, AUTHOR 2 A.J.WILKINSON REVDAT 2 24-FEB-09 6TAA 1 VERSN REVDAT 1 31-OCT-93 6TAA 0 JRNL AUTH H.J.SWIFT,L.BRADY,Z.S.DEREWENDA,E.J.DODSON, JRNL AUTH 2 G.G.DODSON,J.P.TURKENBURG,A.J.WILKINSON JRNL TITL STRUCTURE AND MOLECULAR MODEL REFINEMENT OF JRNL TITL 2 ASPERGILLUS ORYZAE (TAKA) ALPHA-AMYLASE: AN JRNL TITL 3 APPLICATION OF THE SIMULATED-ANNEALING METHOD. JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 47 535 1991 JRNL REFN ISSN 0108-7681 JRNL PMID 1930835 JRNL DOI 10.1107/S0108768191001970 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BOEL,L.BRADY,A.M.BRZOZOWSKI,Z.DEREWENDA, REMARK 1 AUTH 2 G.G.DODSON,V.J.JENSEN,S.B.PETERSEN,H.SWIFT,L.THIM, REMARK 1 AUTH 3 H.F.WOLDIKE REMARK 1 TITL CALCIUM BINDING IN ALPHA-AMYLASES: AN X-RAY REMARK 1 TITL 2 DIFFRACTION STUDY AT 2.1 ANGSTROMS RESOLUTION OF REMARK 1 TITL 3 TWO ENZYMES FROM ASPERGILLUS REMARK 1 REF BIOCHEMISTRY V. 29 6244 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.063 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.080 ; 0.060 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.020 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.161 ; 0.120 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.220 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.268 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.250 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.912 ; 20.000 REMARK 3 STAGGERED (DEGREES) : 22.909; 20.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.009 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.602 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.943 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.703 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIDE CHAINS OF RESIDUES ALA 1, ASP REMARK 3 5, AND LYS 36 ARE NOT CLEARLY VISIBLE IN ELECTRON DENSITY REMARK 3 MAPS, AND ATOMS HAVE BEEN INCLUDED WITH OCCUPANCY ZERO, GIVING REMARK 3 RISE TO NON-IDEAL INTERMOLECULAR DISTANCES AFTER REFINEMENT. REMARK 4 REMARK 4 6TAA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.59150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.59150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 1 CB REMARK 480 ASP A 5 CG OD1 OD2 REMARK 480 ALA A 33 CB REMARK 480 LYS A 36 CG CD CE NZ REMARK 480 GLU A 92 OE1 OE2 REMARK 480 SER A 130 OG REMARK 480 LYS A 138 CG CD CE NZ REMARK 480 GLN A 153 CG CD OE1 NE2 REMARK 480 ASN A 169 OD1 ND2 REMARK 480 ASP A 181 CG OD1 OD2 REMARK 480 GLN A 433 CD OE1 NE2 REMARK 480 LYS A 473 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 5 OH TYR A 113 1.48 REMARK 500 CE LYS A 36 O HOH A 584 1.58 REMARK 500 CB ALA A 1 O HOH A 529 1.77 REMARK 500 OD2 ASP A 77 O HOH A 585 2.00 REMARK 500 O PRO A 70 O HOH A 589 2.01 REMARK 500 O CYS A 38 O HOH A 579 2.11 REMARK 500 OE1 GLU A 156 O HOH A 606 2.17 REMARK 500 OH TYR A 88 OE2 GLU A 186 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 92 CD GLU A 92 OE1 0.172 REMARK 500 GLU A 92 CD GLU A 92 OE2 -0.140 REMARK 500 LYS A 138 CE LYS A 138 NZ -0.315 REMARK 500 ASN A 169 CG ASN A 169 OD1 0.192 REMARK 500 ASP A 181 CB ASP A 181 CG 0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 12 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ALA A 33 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 TYR A 37 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 THR A 41 CA - CB - OG1 ANGL. DEV. = -15.2 DEGREES REMARK 500 ILE A 60 CA - CB - CG1 ANGL. DEV. = -12.4 DEGREES REMARK 500 ILE A 60 CA - CB - CG2 ANGL. DEV. = 15.3 DEGREES REMARK 500 THR A 63 CA - CB - CG2 ANGL. DEV. = 8.8 DEGREES REMARK 500 VAL A 65 N - CA - CB ANGL. DEV. = -17.6 DEGREES REMARK 500 GLN A 68 CG - CD - OE1 ANGL. DEV. = 15.9 DEGREES REMARK 500 TYR A 75 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 88 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 94 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 94 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 THR A 96 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU A 103 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 SER A 105 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 117 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 TYR A 125 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ALA A 128 CB - CA - C ANGL. DEV. = 10.6 DEGREES REMARK 500 VAL A 132 CG1 - CB - CG2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 VAL A 132 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 LYS A 138 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 139 N - CA - CB ANGL. DEV. = -7.2 DEGREES REMARK 500 SER A 141 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 GLN A 153 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR A 155 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ASP A 163 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ASN A 169 OD1 - CG - ND2 ANGL. DEV. = -17.5 DEGREES REMARK 500 VAL A 171 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 177 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 177 CA - C - O ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 181 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL A 182 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 VAL A 183 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 GLU A 186 CG - CD - OE1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 128 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 39.38 -86.64 REMARK 500 ASP A 181 -19.69 -49.69 REMARK 500 SER A 199 69.26 60.13 REMARK 500 THR A 207 39.18 37.28 REMARK 500 ASN A 251 63.44 -68.06 REMARK 500 ALA A 329 123.10 -33.69 REMARK 500 SER A 415 -105.27 -84.65 REMARK 500 SER A 447 -35.79 148.42 REMARK 500 ALA A 470 -78.03 -142.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 92 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 479 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 162 O REMARK 620 2 HIS A 210 O 72.7 REMARK 620 3 HOH A 553 O 76.2 86.1 REMARK 620 4 ASP A 175 OD2 82.8 155.4 89.8 REMARK 620 5 HOH A 525 O 62.6 73.3 137.7 94.1 REMARK 620 6 HOH A 550 O 122.1 119.8 150.8 72.0 68.2 REMARK 620 7 ASN A 121 OD1 152.5 81.6 92.9 122.8 119.2 79.0 REMARK 620 8 ASP A 175 OD1 121.5 147.8 71.5 50.3 138.5 79.3 76.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 480 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 230 OE2 REMARK 620 2 HOH A 556 O 73.3 REMARK 620 3 ASP A 206 OD1 104.2 86.8 REMARK 620 4 GLU A 230 OE1 44.4 103.3 74.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 479 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 480 DBREF 6TAA A 1 478 UNP P10529 AMYA_ASPOR 22 499 SEQRES 1 A 478 ALA THR PRO ALA ASP TRP ARG SER GLN SER ILE TYR PHE SEQRES 2 A 478 LEU LEU THR ASP ARG PHE ALA ARG THR ASP GLY SER THR SEQRES 3 A 478 THR ALA THR CYS ASN THR ALA ASP GLN LYS TYR CYS GLY SEQRES 4 A 478 GLY THR TRP GLN GLY ILE ILE ASP LYS LEU ASP TYR ILE SEQRES 5 A 478 GLN GLY MET GLY PHE THR ALA ILE TRP ILE THR PRO VAL SEQRES 6 A 478 THR ALA GLN LEU PRO GLN THR THR ALA TYR GLY ASP ALA SEQRES 7 A 478 TYR HIS GLY TYR TRP GLN GLN ASP ILE TYR SER LEU ASN SEQRES 8 A 478 GLU ASN TYR GLY THR ALA ASP ASP LEU LYS ALA LEU SER SEQRES 9 A 478 SER ALA LEU HIS GLU ARG GLY MET TYR LEU MET VAL ASP SEQRES 10 A 478 VAL VAL ALA ASN HIS MET GLY TYR ASP GLY ALA GLY SER SEQRES 11 A 478 SER VAL ASP TYR SER VAL PHE LYS PRO PHE SER SER GLN SEQRES 12 A 478 ASP TYR PHE HIS PRO PHE CYS PHE ILE GLN ASN TYR GLU SEQRES 13 A 478 ASP GLN THR GLN VAL GLU ASP CYS TRP LEU GLY ASP ASN SEQRES 14 A 478 THR VAL SER LEU PRO ASP LEU ASP THR THR LYS ASP VAL SEQRES 15 A 478 VAL LYS ASN GLU TRP TYR ASP TRP VAL GLY SER LEU VAL SEQRES 16 A 478 SER ASN TYR SER ILE ASP GLY LEU ARG ILE ASP THR VAL SEQRES 17 A 478 LYS HIS VAL GLN LYS ASP PHE TRP PRO GLY TYR ASN LYS SEQRES 18 A 478 ALA ALA GLY VAL TYR CYS ILE GLY GLU VAL LEU ASP GLY SEQRES 19 A 478 ASP PRO ALA TYR THR CYS PRO TYR GLN ASN VAL MET ASP SEQRES 20 A 478 GLY VAL LEU ASN TYR PRO ILE TYR TYR PRO LEU LEU ASN SEQRES 21 A 478 ALA PHE LYS SER THR SER GLY SER MET ASP ASP LEU TYR SEQRES 22 A 478 ASN MET ILE ASN THR VAL LYS SER ASP CYS PRO ASP SER SEQRES 23 A 478 THR LEU LEU GLY THR PHE VAL GLU ASN HIS ASP ASN PRO SEQRES 24 A 478 ARG PHE ALA SER TYR THR ASN ASP ILE ALA LEU ALA LYS SEQRES 25 A 478 ASN VAL ALA ALA PHE ILE ILE LEU ASN ASP GLY ILE PRO SEQRES 26 A 478 ILE ILE TYR ALA GLY GLN GLU GLN HIS TYR ALA GLY GLY SEQRES 27 A 478 ASN ASP PRO ALA ASN ARG GLU ALA THR TRP LEU SER GLY SEQRES 28 A 478 TYR PRO THR ASP SER GLU LEU TYR LYS LEU ILE ALA SER SEQRES 29 A 478 ALA ASN ALA ILE ARG ASN TYR ALA ILE SER LYS ASP THR SEQRES 30 A 478 GLY PHE VAL THR TYR LYS ASN TRP PRO ILE TYR LYS ASP SEQRES 31 A 478 ASP THR THR ILE ALA MET ARG LYS GLY THR ASP GLY SER SEQRES 32 A 478 GLN ILE VAL THR ILE LEU SER ASN LYS GLY ALA SER GLY SEQRES 33 A 478 ASP SER TYR THR LEU SER LEU SER GLY ALA GLY TYR THR SEQRES 34 A 478 ALA GLY GLN GLN LEU THR GLU VAL ILE GLY CYS THR THR SEQRES 35 A 478 VAL THR VAL GLY SER ASP GLY ASN VAL PRO VAL PRO MET SEQRES 36 A 478 ALA GLY GLY LEU PRO ARG VAL LEU TYR PRO THR GLU LYS SEQRES 37 A 478 LEU ALA GLY SER LYS ILE CYS SER SER SER HET CA A 479 1 HET CA A 480 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *239(H2 O) HELIX 1 1 THR A 2 ARG A 7 1 6 HELIX 2 2 LEU A 15 ALA A 20 1 6 HELIX 3 3 ASN A 31 GLN A 35 5 5 HELIX 4 4 THR A 41 ASP A 47 1 7 HELIX 5 5 LYS A 48 GLY A 54 1 7 HELIX 6 6 ASP A 98 ARG A 110 1 13 HELIX 7 7 ALA A 128 VAL A 132 5 5 HELIX 8 8 SER A 142 TYR A 145 5 4 HELIX 9 9 ASP A 157 CYS A 164 1 8 HELIX 10 10 LYS A 180 SER A 199 1 20 HELIX 11 11 THR A 207 VAL A 211 5 5 HELIX 12 12 GLN A 212 ASP A 214 5 3 HELIX 13 13 PHE A 215 GLY A 224 1 10 HELIX 14 14 ASP A 235 CYS A 240 1 6 HELIX 15 15 PRO A 241 VAL A 245 5 5 HELIX 16 16 ASN A 251 LYS A 263 1 13 HELIX 17 17 SER A 268 CYS A 283 1 16 HELIX 18 18 ASP A 285 LEU A 288 5 4 HELIX 19 19 ARG A 300 THR A 305 1 6 HELIX 20 20 ASP A 307 ASN A 321 1 15 HELIX 21 21 GLY A 330 HIS A 334 5 5 HELIX 22 22 ALA A 346 GLY A 351 5 6 HELIX 23 23 SER A 356 ASP A 376 1 21 HELIX 24 24 GLY A 378 TYR A 382 5 5 SHEET 1 A 8 GLY A 248 VAL A 249 0 SHEET 2 A 8 TYR A 226 GLY A 229 1 O CYS A 227 N GLY A 248 SHEET 3 A 8 GLY A 202 ILE A 205 1 O LEU A 203 N ILE A 228 SHEET 4 A 8 TYR A 113 VAL A 118 1 O LEU A 114 N GLY A 202 SHEET 5 A 8 ALA A 59 ILE A 62 1 O ILE A 60 N MET A 115 SHEET 6 A 8 ILE A 11 LEU A 14 1 N TYR A 12 O ALA A 59 SHEET 7 A 8 ILE A 324 TYR A 328 1 O PRO A 325 N ILE A 11 SHEET 8 A 8 GLY A 290 THR A 291 1 N THR A 291 O ILE A 324 SHEET 1 B 2 THR A 66 GLN A 68 0 SHEET 2 B 2 GLN A 84 LEU A 90 -1 N GLN A 85 O ALA A 67 SHEET 1 C 2 LEU A 166 GLY A 167 0 SHEET 2 C 2 SER A 172 LEU A 173 -1 N LEU A 173 O LEU A 166 SHEET 1 D 6 TRP A 385 ASP A 390 0 SHEET 2 D 6 THR A 393 LYS A 398 -1 O THR A 393 N ASP A 390 SHEET 3 D 6 ILE A 405 SER A 410 -1 N ILE A 405 O LYS A 398 SHEET 4 D 6 ARG A 461 PRO A 465 -1 O ARG A 461 N ILE A 408 SHEET 5 D 6 GLN A 433 GLU A 436 -1 N THR A 435 O TYR A 464 SHEET 6 D 6 THR A 441 THR A 444 -1 O THR A 441 N GLU A 436 SHEET 1 E 2 TYR A 419 LEU A 423 0 SHEET 2 E 2 VAL A 451 MET A 455 -1 O VAL A 451 N LEU A 423 SSBOND 1 CYS A 30 CYS A 38 1555 1555 1.99 SSBOND 2 CYS A 150 CYS A 164 1555 1555 2.10 SSBOND 3 CYS A 240 CYS A 283 1555 1555 1.94 SSBOND 4 CYS A 440 CYS A 475 1555 1555 1.98 LINK CA CA A 479 O GLU A 162 1555 1555 2.55 LINK CA CA A 479 O HIS A 210 1555 1555 2.64 LINK CA CA A 479 O HOH A 553 1555 1555 2.43 LINK CA CA A 479 OD2 ASP A 175 1555 1555 2.74 LINK CA CA A 479 O HOH A 525 1555 1555 2.67 LINK CA CA A 479 O HOH A 550 1555 1555 2.36 LINK CA CA A 479 OD1 ASN A 121 1555 1555 2.44 LINK CA CA A 479 OD1 ASP A 175 1555 1555 2.66 LINK CA CA A 480 OE2 GLU A 230 1555 1555 2.85 LINK CA CA A 480 O HOH A 556 1555 1555 2.31 LINK CA CA A 480 OD1 ASP A 206 1555 1555 2.56 LINK CA CA A 480 OE1 GLU A 230 1555 1555 2.71 CISPEP 1 LYS A 138 PRO A 139 0 5.52 CISPEP 2 ASP A 340 PRO A 341 0 0.06 SITE 1 AC1 7 ASN A 121 GLU A 162 ASP A 175 HIS A 210 SITE 2 AC1 7 HOH A 525 HOH A 550 HOH A 553 SITE 1 AC2 3 ASP A 206 GLU A 230 HOH A 556 CRYST1 51.040 67.183 133.560 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007487 0.00000