PDB Short entry for 6TUB HEADER HORMONE 05-JAN-20 6TUB TITLE BETA-ENDORPHIN AMYLOID FIBRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-ENDORPHIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POMC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET32A KEYWDS AMYLOID FIBRIL FUNCTIONAL AMYLOID HORMONE STORAGE HORMONE RELEASE, KEYWDS 2 HORMONE EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR J.VERASDONCK,C.SEURING,J.GATH,D.GHOSH,N.NESPOVITAYA,M.A.WAELTI, AUTHOR 2 S.MAJI,R.CADALBERT,A.BOECKMANN,P.GUENTERT,B.H.MEIER,R.RIEK REVDAT 2 16-DEC-20 6TUB 1 JRNL REVDAT 1 28-OCT-20 6TUB 0 JRNL AUTH C.SEURING,J.VERASDONCK,J.GATH,D.GHOSH,N.NESPOVITAYA, JRNL AUTH 2 M.A.WALTI,S.K.MAJI,R.CADALBERT,P.GUNTERT,B.H.MEIER,R.RIEK JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF HUMAN BETA-ENDORPHIN JRNL TITL 2 AMYLOID FIBRILS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 27 1178 2020 JRNL REFN ESSN 1545-9985 JRNL PMID 33046908 JRNL DOI 10.1038/S41594-020-00515-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.SEURING,J.GATH,J.VERASDONCK,R.CADALBERT,J.RIVIER, REMARK 1 AUTH 2 A.BOECKMANN,B.H.MEIER,R.RIEK REMARK 1 TITL SOLID-STATE NMR SEQUENTIAL ASSIGNMENT OF THE BETA-ENDORPHIN REMARK 1 TITL 2 PEPTIDE IN ITS AMYLOID FORM. REMARK 1 REF BIOMOL NMR ASSIGN V. 10 259 2016 REMARK 1 REFN ESSN 1874-270X REMARK 1 DOI 10.1007/S12104-016-9681-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.3 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106077. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : N.A. REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 2 MG/ML [U-100% 13C; U-100% 15N] REMARK 210 BETA-ENDORPHIN, 90 % H2O, 10 % REMARK 210 [U-2H] D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D CHHC; 2D PAR; 2D PDSD REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 95 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 11 41.94 -87.38 REMARK 500 1 PRO A 13 83.20 -69.79 REMARK 500 1 LYS A 29 -72.50 -50.06 REMARK 500 1 GLN B 11 41.45 -86.82 REMARK 500 1 PRO B 13 84.42 -69.67 REMARK 500 1 LYS B 29 -74.71 -49.86 REMARK 500 1 GLN C 11 41.54 -87.32 REMARK 500 1 PRO C 13 85.24 -69.79 REMARK 500 1 LYS C 29 -74.60 -49.95 REMARK 500 1 GLN D 11 42.84 -87.08 REMARK 500 1 PRO D 13 85.17 -69.78 REMARK 500 1 LYS D 29 -74.72 -49.82 REMARK 500 1 GLN E 11 43.00 -86.38 REMARK 500 1 PRO E 13 85.33 -69.74 REMARK 500 1 LYS E 29 -74.19 -49.62 REMARK 500 1 GLN F 11 43.23 -90.80 REMARK 500 1 PRO F 13 84.09 -69.76 REMARK 500 1 LYS F 29 -74.32 -50.86 REMARK 500 2 GLN A 11 45.57 -85.94 REMARK 500 2 LEU A 14 -159.97 -115.80 REMARK 500 2 GLN B 11 42.01 -86.06 REMARK 500 2 LEU B 14 -159.81 -114.51 REMARK 500 2 GLN C 11 41.93 -86.68 REMARK 500 2 LEU C 14 -159.36 -114.40 REMARK 500 2 GLN D 11 42.77 -86.86 REMARK 500 2 LEU D 14 -159.39 -114.37 REMARK 500 2 GLN E 11 42.77 -85.61 REMARK 500 2 LEU E 14 -159.86 -115.07 REMARK 500 2 GLN F 11 42.82 -89.49 REMARK 500 2 LEU F 14 -162.67 -113.99 REMARK 500 3 GLN A 11 47.12 -85.70 REMARK 500 3 LEU A 14 -160.42 -108.17 REMARK 500 3 GLN B 11 45.59 -85.57 REMARK 500 3 LEU B 14 -160.00 -108.34 REMARK 500 3 GLN C 11 45.86 -85.86 REMARK 500 3 LEU C 14 -160.24 -108.35 REMARK 500 3 GLN D 11 46.82 -85.84 REMARK 500 3 LEU D 14 -160.15 -108.37 REMARK 500 3 GLN E 11 47.19 -85.12 REMARK 500 3 LEU E 14 -160.42 -108.92 REMARK 500 3 GLN F 11 46.25 -88.88 REMARK 500 3 LEU F 14 -164.48 -109.12 REMARK 500 4 GLN A 11 44.12 -86.90 REMARK 500 4 LEU A 14 -160.75 -109.58 REMARK 500 4 LYS A 28 179.80 -59.68 REMARK 500 4 GLN B 11 41.53 -87.04 REMARK 500 4 LEU B 14 -160.26 -109.99 REMARK 500 4 LYS B 28 -179.04 -59.25 REMARK 500 4 GLN C 11 42.41 -87.19 REMARK 500 4 LEU C 14 -160.12 -110.02 REMARK 500 REMARK 500 THIS ENTRY HAS 194 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26715 RELATED DB: BMRB DBREF 6TUB A 1 31 UNP P01189 COLI_HUMAN 237 267 DBREF 6TUB B 1 31 UNP P01189 COLI_HUMAN 237 267 DBREF 6TUB C 1 31 UNP P01189 COLI_HUMAN 237 267 DBREF 6TUB D 1 31 UNP P01189 COLI_HUMAN 237 267 DBREF 6TUB E 1 31 UNP P01189 COLI_HUMAN 237 267 DBREF 6TUB F 1 31 UNP P01189 COLI_HUMAN 237 267 SEQRES 1 A 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 A 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 A 31 TYR LYS LYS GLY GLU SEQRES 1 B 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 B 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 B 31 TYR LYS LYS GLY GLU SEQRES 1 C 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 C 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 C 31 TYR LYS LYS GLY GLU SEQRES 1 D 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 D 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 D 31 TYR LYS LYS GLY GLU SEQRES 1 E 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 E 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 E 31 TYR LYS LYS GLY GLU SEQRES 1 F 31 TYR GLY GLY PHE MET THR SER GLU LYS SER GLN THR PRO SEQRES 2 F 31 LEU VAL THR LEU PHE LYS ASN ALA ILE ILE LYS ASN ALA SEQRES 3 F 31 TYR LYS LYS GLY GLU SHEET 1 AA1 6 MET A 5 LYS A 9 0 SHEET 2 AA1 6 MET B 5 LYS B 9 1 O LYS B 9 N GLU A 8 SHEET 3 AA1 6 MET C 5 LYS C 9 1 O LYS C 9 N GLU B 8 SHEET 4 AA1 6 MET D 5 LYS D 9 1 O LYS D 9 N GLU C 8 SHEET 5 AA1 6 MET E 5 LYS E 9 1 O LYS E 9 N GLU D 8 SHEET 6 AA1 6 MET F 5 LYS F 9 1 O LYS F 9 N GLU E 8 SHEET 1 AA2 6 ILE A 22 LYS A 24 0 SHEET 2 AA2 6 ILE B 22 LYS B 24 1 O ILE B 22 N ILE A 23 SHEET 3 AA2 6 ILE C 22 LYS C 24 1 O ILE C 22 N ILE B 23 SHEET 4 AA2 6 ILE D 22 LYS D 24 1 O ILE D 22 N ILE C 23 SHEET 5 AA2 6 ILE E 22 LYS E 24 1 O ILE E 22 N ILE D 23 SHEET 6 AA2 6 ILE F 22 LYS F 24 1 O ILE F 22 N ILE E 23 SHEET 1 AA3 2 VAL E 15 PHE E 18 0 SHEET 2 AA3 2 VAL F 15 PHE F 18 1 O LEU F 17 N PHE E 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000