PDB Short entry for 6U5E HEADER ISOMERASE 27-AUG-19 6U5E TITLE RT XFEL STRUCTURE OF CYPA SOLVED USING CELLOLUSE CARRIER MEDIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE A,CYCLOPHILIN A,CYCLOSPORIN A-BINDING PROTEIN, COMPND 5 ROTAMASE A; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIA, CYPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDYL-PROLYL, CIS-TRANS, ISOMERASE, CYCLOPHILIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.WOLFF,E.NANGO,T.NAKANE,I.D.YOUNG,A.S.BREWSTER,M.SUGAHARA, AUTHOR 2 R.TANAKA,N.K.SAUTER,K.TONO,S.IWATA,J.S.FRASER,M.C.THOMPSON REVDAT 5 11-OCT-23 6U5E 1 REMARK REVDAT 4 16-AUG-23 6U5E 1 REMARK REVDAT 3 11-MAR-20 6U5E 1 JRNL REVDAT 2 12-FEB-20 6U5E 1 AUTHOR JRNL REVDAT 1 29-JAN-20 6U5E 0 JRNL AUTH A.M.WOLFF,I.D.YOUNG,R.G.SIERRA,A.S.BREWSTER,M.W.MARTYNOWYCZ, JRNL AUTH 2 E.NANGO,M.SUGAHARA,T.NAKANE,K.ITO,A.AQUILA,A.BHOWMICK, JRNL AUTH 3 J.T.BIEL,S.CARBAJO,A.E.COHEN,S.CORTEZ,A.GONZALEZ,T.HINO, JRNL AUTH 4 D.IM,J.D.KORALEK,M.KUBO,T.S.LAZAROU,T.NOMURA,S.OWADA, JRNL AUTH 5 A.SAMELSON,T.TANAKA,R.TANAKA,E.M.THOMPSON,H.VAN DEN BEDEM, JRNL AUTH 6 R.A.WOLDEYES,F.YUMOTO,W.ZHAO,K.TONO,S.BOUTET,S.IWATA, JRNL AUTH 7 T.GONEN,N.K.SAUTER,J.S.FRASER,M.C.THOMPSON JRNL TITL COMPARING SERIAL X-RAY CRYSTALLOGRAPHY AND MICROCRYSTAL JRNL TITL 2 ELECTRON DIFFRACTION (MICROED) AS METHODS FOR ROUTINE JRNL TITL 3 STRUCTURE DETERMINATION FROM SMALL MACROMOLECULAR CRYSTALS JRNL REF IUCRJ V. 7 306 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S205225252000072X REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.150 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9000 - 2.9800 1.00 4293 139 0.1322 0.1441 REMARK 3 2 2.9800 - 2.3700 1.00 4111 133 0.1386 0.1513 REMARK 3 3 2.3700 - 2.0700 1.00 4053 133 0.1207 0.1466 REMARK 3 4 2.0700 - 1.8800 1.00 4057 133 0.1187 0.1355 REMARK 3 5 1.8800 - 1.7500 1.00 4036 131 0.1389 0.1592 REMARK 3 6 1.7500 - 1.6400 1.00 4021 128 0.1584 0.1746 REMARK 3 7 1.6400 - 1.5600 1.00 4027 132 0.2376 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1446 REMARK 3 ANGLE : 1.298 1959 REMARK 3 CHIRALITY : 0.081 198 REMARK 3 PLANARITY : 0.009 266 REMARK 3 DIHEDRAL : 16.542 867 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4331 6.0056 22.7492 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.2134 REMARK 3 T33: 0.2156 T12: 0.0084 REMARK 3 T13: -0.0064 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.5998 L22: 1.8382 REMARK 3 L33: 4.7161 L12: 0.7069 REMARK 3 L13: -1.2788 L23: -0.0851 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.2168 S13: -0.0855 REMARK 3 S21: 0.2457 S22: -0.0477 S23: -0.0759 REMARK 3 S31: 0.1854 S32: 0.2338 S33: 0.0183 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2912 6.3833 17.9748 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.1776 REMARK 3 T33: 0.1686 T12: 0.0286 REMARK 3 T13: -0.0172 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.4208 L22: 2.7646 REMARK 3 L33: 3.5473 L12: 0.6897 REMARK 3 L13: -1.0547 L23: -0.9423 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0504 S13: -0.1872 REMARK 3 S21: 0.1532 S22: -0.0230 S23: -0.1612 REMARK 3 S31: 0.1779 S32: 0.2738 S33: 0.0552 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3487 13.8586 15.4651 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: 0.1665 REMARK 3 T33: 0.2008 T12: 0.0021 REMARK 3 T13: 0.0223 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.9917 L22: 2.6595 REMARK 3 L33: 4.0473 L12: 0.9927 REMARK 3 L13: 0.8505 L23: 1.1826 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0166 S13: -0.0367 REMARK 3 S21: -0.0172 S22: 0.0920 S23: -0.0047 REMARK 3 S31: -0.2144 S32: 0.0014 S33: -0.0711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5773 21.7688 12.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.2081 REMARK 3 T33: 0.2737 T12: -0.0311 REMARK 3 T13: 0.0212 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.3725 L22: 0.9759 REMARK 3 L33: 2.0532 L12: -1.0355 REMARK 3 L13: -1.3449 L23: 0.4586 REMARK 3 S TENSOR REMARK 3 S11: 0.1726 S12: 0.0159 S13: 0.3870 REMARK 3 S21: -0.0956 S22: -0.0261 S23: -0.1385 REMARK 3 S31: -0.4562 S32: 0.1788 S33: -0.1434 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8210 5.3981 5.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.2012 REMARK 3 T33: 0.2365 T12: 0.0409 REMARK 3 T13: 0.0098 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.4025 L22: 2.6090 REMARK 3 L33: 3.3966 L12: 1.6343 REMARK 3 L13: -1.5858 L23: -0.5934 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: 0.0697 S13: -0.3008 REMARK 3 S21: -0.0842 S22: -0.0199 S23: -0.1087 REMARK 3 S31: 0.4063 S32: 0.1128 S33: 0.1422 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1776 11.2281 4.8796 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1818 REMARK 3 T33: 0.1796 T12: 0.0224 REMARK 3 T13: 0.0026 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.3459 L22: 0.6586 REMARK 3 L33: 3.4758 L12: 0.1744 REMARK 3 L13: -1.4378 L23: -0.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.1380 S13: 0.0375 REMARK 3 S21: -0.0076 S22: -0.0301 S23: -0.0097 REMARK 3 S31: -0.0259 S32: -0.1447 S33: -0.0352 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9328 3.9928 8.6621 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1568 REMARK 3 T33: 0.2246 T12: 0.0362 REMARK 3 T13: 0.0011 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.6547 L22: 1.4249 REMARK 3 L33: 4.5173 L12: 1.3199 REMARK 3 L13: -3.0477 L23: 0.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: -0.0194 S13: -0.1822 REMARK 3 S21: 0.0099 S22: -0.0232 S23: -0.1904 REMARK 3 S31: 0.2342 S32: 0.1010 S33: 0.1372 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3583 2.8079 16.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.2683 REMARK 3 T33: 0.2432 T12: -0.0475 REMARK 3 T13: 0.0028 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.6409 L22: 5.7731 REMARK 3 L33: 2.1146 L12: -3.7698 REMARK 3 L13: 1.6491 L23: -1.7026 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: -0.0360 S13: -0.1564 REMARK 3 S21: -0.3089 S22: 0.1592 S23: 0.3556 REMARK 3 S31: 0.2431 S32: -0.3354 S33: -0.2181 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9674 12.1237 18.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.2019 REMARK 3 T33: 0.2444 T12: 0.0087 REMARK 3 T13: 0.0344 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.8771 L22: 1.0310 REMARK 3 L33: 5.8556 L12: 0.5526 REMARK 3 L13: 1.7681 L23: 0.4981 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.3800 S13: 0.0464 REMARK 3 S21: 0.1001 S22: 0.0191 S23: 0.1564 REMARK 3 S31: -0.1513 S32: -0.6824 S33: -0.0327 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL3 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL3 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.24 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29527 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 261.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 40.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 5 MM TCEP, 20% REMARK 280 PEG3350, BATCH MODE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 8 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 60 -73.70 -140.47 REMARK 500 PHE A 60 -74.40 -140.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 6U5E A 1 165 UNP P62937 PPIA_HUMAN 1 165 SEQRES 1 A 165 MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL ASP SEQRES 2 A 165 GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE ALA SEQRES 3 A 165 ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 A 165 SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER CYS SEQRES 5 A 165 PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY GLY SEQRES 6 A 165 ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 A 165 TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU LYS SEQRES 8 A 165 HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA GLY SEQRES 9 A 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ALA SEQRES 10 A 165 LYS THR GLU TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY SEQRES 11 A 165 LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET GLU SEQRES 12 A 165 ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS ILE SEQRES 13 A 165 THR ILE ALA ASP CYS GLY GLN LEU GLU FORMUL 2 HOH *149(H2 O) HELIX 1 AA1 VAL A 29 GLY A 42 1 14 HELIX 2 AA2 THR A 119 ASP A 123 5 5 HELIX 3 AA3 GLY A 135 ARG A 144 1 10 SHEET 1 AA1 8 PHE A 53 ILE A 57 0 SHEET 2 AA1 8 MET A 61 GLY A 64 -1 O GLN A 63 N ARG A 55 SHEET 3 AA1 8 PHE A 112 CYS A 115 -1 O ILE A 114 N CYS A 62 SHEET 4 AA1 8 ILE A 97 MET A 100 -1 N ILE A 97 O CYS A 115 SHEET 5 AA1 8 VAL A 128 GLU A 134 -1 O GLY A 130 N LEU A 98 SHEET 6 AA1 8 GLU A 15 LEU A 24 -1 N GLU A 23 O LYS A 131 SHEET 7 AA1 8 THR A 5 VAL A 12 -1 N ILE A 10 O GLY A 18 SHEET 8 AA1 8 ILE A 156 GLN A 163 -1 O ASP A 160 N ASP A 9 CRYST1 43.000 52.600 89.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011211 0.00000