PDB Short entry for 6UPR HEADER STRUCTURAL PROTEIN 18-OCT-19 6UPR TITLE CRYSTAL STRUCTURE OF GTPASE DOMAIN OF HUMAN SEPTIN 2 / SEPTIN 8 TITLE 2 HETEROCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEPTIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEURAL PRECURSOR CELL EXPRESSED DEVELOPMENTALLY DOWN- COMPND 5 REGULATED PROTEIN 5,NEDD-5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SEPTIN-8; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEPTIN2, DIFF6, KIAA0158, NEDD5, SEPT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SEPTIN8, KIAA0202, SEPT8; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET-DUET-1 KEYWDS CYTOSKELETON PROTEIN, SEPTIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.A.LEONARDO,H.M.PEREIRA,J.BRANDAO-NETO,A.P.U.ARAUJO,R.C.GARRATT REVDAT 4 11-OCT-23 6UPR 1 REMARK REVDAT 3 28-OCT-20 6UPR 1 JRNL REVDAT 2 30-SEP-20 6UPR 1 JRNL REVDAT 1 23-SEP-20 6UPR 0 JRNL AUTH H.V.D.ROSA,D.A.LEONARDO,G.BROGNARA,J.BRANDAO-NETO, JRNL AUTH 2 H.D'MUNIZ PEREIRA,A.P.U.ARAUJO,R.C.GARRATT JRNL TITL MOLECULAR RECOGNITION AT SEPTIN INTERFACES: THE SWITCHES JRNL TITL 2 HOLD THE KEY. JRNL REF J.MOL.BIOL. V. 432 5784 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32910969 JRNL DOI 10.1016/J.JMB.2020.09.001 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 28678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.9590 - 4.9529 0.99 2805 148 0.1702 0.1998 REMARK 3 2 4.9529 - 3.9316 0.99 2783 128 0.1576 0.1756 REMARK 3 3 3.9316 - 3.4347 0.99 2762 139 0.1943 0.2316 REMARK 3 4 3.4347 - 3.1207 0.99 2764 136 0.2254 0.3178 REMARK 3 5 3.1207 - 2.8970 0.98 2722 116 0.2542 0.3010 REMARK 3 6 2.8970 - 2.7262 0.98 2724 140 0.2679 0.3251 REMARK 3 7 2.7262 - 2.5897 0.98 2688 144 0.2762 0.3217 REMARK 3 8 2.5897 - 2.4769 0.98 2705 154 0.2968 0.4323 REMARK 3 9 2.4769 - 2.3816 0.98 2664 143 0.3146 0.3741 REMARK 3 10 2.3816 - 2.2994 0.97 2667 146 0.3406 0.3783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3428 11.2928 13.6275 REMARK 3 T TENSOR REMARK 3 T11: 0.5903 T22: 0.5173 REMARK 3 T33: 0.4315 T12: 0.1256 REMARK 3 T13: -0.1048 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 4.5387 L22: 4.9513 REMARK 3 L33: 5.5560 L12: 1.3528 REMARK 3 L13: -2.1543 L23: -3.3381 REMARK 3 S TENSOR REMARK 3 S11: 0.0884 S12: -0.2364 S13: 0.1206 REMARK 3 S21: 0.3332 S22: 0.0994 S23: 0.1612 REMARK 3 S31: -0.9669 S32: -0.4880 S33: -0.2250 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1793 2.7459 5.9844 REMARK 3 T TENSOR REMARK 3 T11: 0.4382 T22: 0.5574 REMARK 3 T33: 0.4794 T12: 0.0777 REMARK 3 T13: -0.0626 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 4.9754 L22: 2.7961 REMARK 3 L33: 4.7730 L12: 1.1076 REMARK 3 L13: 3.1608 L23: 2.4719 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: -0.2508 S13: 0.2397 REMARK 3 S21: -0.1357 S22: 0.0259 S23: 0.2056 REMARK 3 S31: -0.2385 S32: -0.7625 S33: 0.0381 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3087 2.7991 5.4947 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.5325 REMARK 3 T33: 0.4277 T12: 0.1029 REMARK 3 T13: -0.0800 T23: -0.1076 REMARK 3 L TENSOR REMARK 3 L11: 2.1290 L22: 2.6342 REMARK 3 L33: 2.7092 L12: 0.5655 REMARK 3 L13: 1.3107 L23: -0.1051 REMARK 3 S TENSOR REMARK 3 S11: 0.1923 S12: 0.4538 S13: -0.3212 REMARK 3 S21: -0.1049 S22: 0.0152 S23: -0.3777 REMARK 3 S31: 0.2995 S32: 0.3740 S33: -0.2002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9495 4.8851 0.0724 REMARK 3 T TENSOR REMARK 3 T11: 0.4628 T22: 0.5413 REMARK 3 T33: 0.4206 T12: 0.1488 REMARK 3 T13: -0.0330 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 9.0959 L22: 5.5363 REMARK 3 L33: 3.7787 L12: 6.2274 REMARK 3 L13: 4.5446 L23: 2.8130 REMARK 3 S TENSOR REMARK 3 S11: -0.2886 S12: 1.0215 S13: 0.0483 REMARK 3 S21: -0.4488 S22: 0.4157 S23: 0.1629 REMARK 3 S31: -0.0447 S32: 0.3091 S33: -0.1403 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6720 -2.2462 32.3601 REMARK 3 T TENSOR REMARK 3 T11: 0.6730 T22: 0.5913 REMARK 3 T33: 0.5365 T12: 0.1351 REMARK 3 T13: -0.2061 T23: -0.1050 REMARK 3 L TENSOR REMARK 3 L11: 3.3599 L22: 3.4066 REMARK 3 L33: 4.4665 L12: 1.0280 REMARK 3 L13: -1.2828 L23: -1.8854 REMARK 3 S TENSOR REMARK 3 S11: 0.2663 S12: 0.4523 S13: -0.4067 REMARK 3 S21: 0.0644 S22: 0.0697 S23: -0.3254 REMARK 3 S31: 0.5315 S32: 0.5291 S33: -0.3852 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3770 -5.7330 41.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.6561 T22: 0.4046 REMARK 3 T33: 0.4669 T12: 0.0554 REMARK 3 T13: -0.1656 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.5484 L22: 2.2836 REMARK 3 L33: 8.8915 L12: -1.4146 REMARK 3 L13: 1.5147 L23: -1.2653 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: 0.1851 S13: -0.1553 REMARK 3 S21: -0.2541 S22: -0.0527 S23: -0.0245 REMARK 3 S31: 0.7474 S32: 0.2878 S33: -0.0106 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0885 6.0094 38.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.6462 T22: 0.5746 REMARK 3 T33: 0.4891 T12: 0.0765 REMARK 3 T13: -0.1625 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.1803 L22: 0.8690 REMARK 3 L33: 1.8573 L12: 0.4402 REMARK 3 L13: -0.5721 L23: -0.9068 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: 0.1056 S13: -0.0520 REMARK 3 S21: 0.0717 S22: -0.0661 S23: -0.0390 REMARK 3 S31: -0.0473 S32: -0.1191 S33: -0.0336 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5517 18.2395 46.5500 REMARK 3 T TENSOR REMARK 3 T11: 0.8313 T22: 0.7481 REMARK 3 T33: 0.5239 T12: 0.1263 REMARK 3 T13: -0.0776 T23: -0.1866 REMARK 3 L TENSOR REMARK 3 L11: 9.5186 L22: 8.5207 REMARK 3 L33: 8.7323 L12: 1.4396 REMARK 3 L13: 0.9431 L23: -0.3434 REMARK 3 S TENSOR REMARK 3 S11: 0.4279 S12: -1.0835 S13: 0.7677 REMARK 3 S21: 1.6590 S22: 0.1895 S23: -0.8446 REMARK 3 S31: -0.5402 S32: 0.2409 S33: -0.5834 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2371 12.1195 32.2916 REMARK 3 T TENSOR REMARK 3 T11: 0.5333 T22: 0.5746 REMARK 3 T33: 0.4828 T12: -0.0081 REMARK 3 T13: -0.1576 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.3271 L22: 1.7431 REMARK 3 L33: 3.7758 L12: 0.6753 REMARK 3 L13: -2.2378 L23: -1.6163 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: -0.2013 S13: -0.0486 REMARK 3 S21: 0.4387 S22: -0.1028 S23: -0.2846 REMARK 3 S31: -0.3569 S32: 0.4941 S33: 0.0174 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 292 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6810 -3.7237 57.8509 REMARK 3 T TENSOR REMARK 3 T11: 0.7180 T22: 0.6191 REMARK 3 T33: 0.6259 T12: 0.0889 REMARK 3 T13: -0.1771 T23: -0.1616 REMARK 3 L TENSOR REMARK 3 L11: 5.0498 L22: 6.8182 REMARK 3 L33: 6.4442 L12: -1.0956 REMARK 3 L13: -0.0181 L23: -4.5765 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.2032 S13: -0.6329 REMARK 3 S21: -0.1760 S22: -0.2206 S23: 0.7410 REMARK 3 S31: -0.0923 S32: -0.3034 S33: -0.0601 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000245011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.299 REMARK 200 RESOLUTION RANGE LOW (A) : 82.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES/IMIDAZOLE PH 6.5, 10% PEG REMARK 280 8000, 20% ETHYLENE GLYCOL AND 20MM OF EACH 1,6-HEXANEDIOL, 1- REMARK 280 BUTANOL, (RS)-1,2-PROPANEDIOL, 2-PROPANOL, 1,4-BUTANEDIOL AND 1, REMARK 280 3-PROPANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.38650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 GLU A 90 REMARK 465 ARG A 91 REMARK 465 GLY A 92 REMARK 465 VAL A 93 REMARK 465 GLY A 307 REMARK 465 GLY A 308 REMARK 465 MET B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 SER B 30 REMARK 465 GLN B 31 REMARK 465 ASP B 32 REMARK 465 PRO B 33 REMARK 465 ASN B 34 REMARK 465 SER B 35 REMARK 465 SER B 36 REMARK 465 LYS B 37 REMARK 465 SER B 38 REMARK 465 VAL B 39 REMARK 465 THR B 40 REMARK 465 GLN B 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 HIS A 140 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ARG A 306 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 SER B 93 OG REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 111 53.79 -110.61 REMARK 500 ASN A 137 42.04 -94.18 REMARK 500 ARG A 139 -126.04 -135.49 REMARK 500 SER A 218 63.70 -62.43 REMARK 500 ASP A 219 -28.46 -143.41 REMARK 500 LEU A 294 -63.17 -103.62 REMARK 500 GLU B 115 50.65 -102.32 REMARK 500 SER B 141 68.87 -154.72 REMARK 500 HIS B 162 -125.81 -99.68 REMARK 500 SER B 163 -134.56 -105.03 REMARK 500 ASP B 189 4.76 -69.93 REMARK 500 SER B 242 134.99 -170.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 58 OG REMARK 620 2 GTP B 401 O1G 162.5 REMARK 620 3 GTP B 401 O1B 93.2 76.0 REMARK 620 4 HOH B 502 O 103.1 84.6 158.2 REMARK 620 5 HOH B 508 O 102.7 89.3 81.0 108.9 REMARK 620 6 HOH B 513 O 88.4 77.0 83.9 82.2 161.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UPA RELATED DB: PDB REMARK 900 SEPTIN 2/6 COMPLEX REMARK 900 RELATED ID: 6UPQ RELATED DB: PDB REMARK 900 SEPTIN 2/11 COMPLEX DBREF 6UPR A 36 308 UNP Q15019 SEPT2_HUMAN 71 343 DBREF 6UPR B 36 311 UNP Q92599 SEPT8_HUMAN 36 311 SEQADV 6UPR MET A 35 UNP Q15019 INITIATING METHIONINE SEQADV 6UPR MET B 20 UNP Q92599 INITIATING METHIONINE SEQADV 6UPR GLY B 21 UNP Q92599 EXPRESSION TAG SEQADV 6UPR SER B 22 UNP Q92599 EXPRESSION TAG SEQADV 6UPR SER B 23 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 24 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 25 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 26 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 27 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 28 UNP Q92599 EXPRESSION TAG SEQADV 6UPR HIS B 29 UNP Q92599 EXPRESSION TAG SEQADV 6UPR SER B 30 UNP Q92599 EXPRESSION TAG SEQADV 6UPR GLN B 31 UNP Q92599 EXPRESSION TAG SEQADV 6UPR ASP B 32 UNP Q92599 EXPRESSION TAG SEQADV 6UPR PRO B 33 UNP Q92599 EXPRESSION TAG SEQADV 6UPR ASN B 34 UNP Q92599 EXPRESSION TAG SEQADV 6UPR SER B 35 UNP Q92599 EXPRESSION TAG SEQRES 1 A 274 MET PHE GLU PHE THR LEU MET VAL VAL GLY GLU SER GLY SEQRES 2 A 274 LEU GLY LYS SER THR LEU ILE ASN SER LEU PHE LEU THR SEQRES 3 A 274 ASP LEU TYR PRO GLU ARG VAL ILE PRO GLY ALA ALA GLU SEQRES 4 A 274 LYS ILE GLU ARG THR VAL GLN ILE GLU ALA SER THR VAL SEQRES 5 A 274 GLU ILE GLU GLU ARG GLY VAL LYS LEU ARG LEU THR VAL SEQRES 6 A 274 VAL ASP THR PRO GLY TYR GLY ASP ALA ILE ASN CYS ARG SEQRES 7 A 274 ASP CYS PHE LYS THR ILE ILE SER TYR ILE ASP GLU GLN SEQRES 8 A 274 PHE GLU ARG TYR LEU HIS ASP GLU SER GLY LEU ASN ARG SEQRES 9 A 274 ARG HIS ILE ILE ASP ASN ARG VAL HIS CYS CYS PHE TYR SEQRES 10 A 274 PHE ILE SER PRO PHE GLY HIS GLY LEU LYS PRO LEU ASP SEQRES 11 A 274 VAL ALA PHE MET LYS ALA ILE HIS ASN LYS VAL ASN ILE SEQRES 12 A 274 VAL PRO VAL ILE ALA LYS ALA ASP THR LEU THR LEU LYS SEQRES 13 A 274 GLU ARG GLU ARG LEU LYS LYS ARG ILE LEU ASP GLU ILE SEQRES 14 A 274 GLU GLU HIS ASN ILE LYS ILE TYR HIS LEU PRO ASP ALA SEQRES 15 A 274 GLU SER ASP GLU ASP GLU ASP PHE LYS GLU GLN THR ARG SEQRES 16 A 274 LEU LEU LYS ALA SER ILE PRO PHE SER VAL VAL GLY SER SEQRES 17 A 274 ASN GLN LEU ILE GLU ALA LYS GLY LYS LYS VAL ARG GLY SEQRES 18 A 274 ARG LEU TYR PRO TRP GLY VAL VAL GLU VAL GLU ASN PRO SEQRES 19 A 274 GLU HIS ASN ASP PHE LEU LYS LEU ARG THR MET LEU ILE SEQRES 20 A 274 THR HIS MET GLN ASP LEU GLN GLU VAL THR GLN ASP LEU SEQRES 21 A 274 HIS TYR GLU ASN PHE ARG SER GLU ARG LEU LYS ARG GLY SEQRES 22 A 274 GLY SEQRES 1 B 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 292 PRO ASN SER SER LYS SER VAL THR GLN GLY PHE SER PHE SEQRES 3 B 292 ASN ILE LEU CYS VAL GLY GLU THR GLY ILE GLY LYS SER SEQRES 4 B 292 THR LEU MET ASN THR LEU PHE ASN THR THR PHE GLU THR SEQRES 5 B 292 GLU GLU ALA SER HIS HIS GLU ALA CYS VAL ARG LEU ARG SEQRES 6 B 292 PRO GLN THR TYR ASP LEU GLN GLU SER ASN VAL GLN LEU SEQRES 7 B 292 LYS LEU THR ILE VAL ASP ALA VAL GLY PHE GLY ASP GLN SEQRES 8 B 292 ILE ASN LYS ASP GLU SER TYR ARG PRO ILE VAL ASP TYR SEQRES 9 B 292 ILE ASP ALA GLN PHE GLU ASN TYR LEU GLN GLU GLU LEU SEQRES 10 B 292 LYS ILE ARG ARG SER LEU PHE ASP TYR HIS ASP THR ARG SEQRES 11 B 292 ILE HIS VAL CYS LEU TYR PHE ILE THR PRO THR GLY HIS SEQRES 12 B 292 SER LEU LYS SER LEU ASP LEU VAL THR MET LYS LYS LEU SEQRES 13 B 292 ASP SER LYS VAL ASN ILE ILE PRO ILE ILE ALA LYS ALA SEQRES 14 B 292 ASP THR ILE SER LYS SER GLU LEU HIS LYS PHE LYS ILE SEQRES 15 B 292 LYS ILE MET GLY GLU LEU VAL SER ASN GLY VAL GLN ILE SEQRES 16 B 292 TYR GLN PHE PRO THR ASP ASP GLU ALA VAL ALA GLU ILE SEQRES 17 B 292 ASN ALA VAL MET ASN ALA HIS LEU PRO PHE ALA VAL VAL SEQRES 18 B 292 GLY SER THR GLU GLU VAL LYS VAL GLY ASN LYS LEU VAL SEQRES 19 B 292 ARG ALA ARG GLN TYR PRO TRP GLY VAL VAL GLN VAL GLU SEQRES 20 B 292 ASN GLU ASN HIS CYS ASP PHE VAL LYS LEU ARG GLU MET SEQRES 21 B 292 LEU ILE ARG VAL ASN MET GLU ASP LEU ARG GLU GLN THR SEQRES 22 B 292 HIS SER ARG HIS TYR GLU LEU TYR ARG ARG CYS LYS LEU SEQRES 23 B 292 GLU GLU MET GLY PHE GLN HET GDP A1401 28 HET GTP B 401 32 HET MG B 402 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 GTP C10 H16 N5 O14 P3 FORMUL 5 MG MG 2+ FORMUL 6 HOH *87(H2 O) HELIX 1 AA1 GLY A 49 LEU A 59 1 11 HELIX 2 AA2 ALA A 72 ARG A 77 5 6 HELIX 3 AA3 PHE A 115 GLY A 135 1 21 HELIX 4 AA4 LYS A 161 HIS A 172 1 12 HELIX 5 AA5 LYS A 183 LEU A 187 5 5 HELIX 6 AA6 THR A 188 HIS A 206 1 19 HELIX 7 AA7 ASP A 221 SER A 234 1 14 HELIX 8 AA8 ASP A 272 HIS A 283 1 12 HELIX 9 AA9 HIS A 283 LEU A 294 1 12 HELIX 10 AB1 LEU A 294 LYS A 305 1 12 HELIX 11 AB2 GLY B 56 PHE B 65 1 10 HELIX 12 AB3 TYR B 117 LEU B 136 1 20 HELIX 13 AB4 LYS B 165 ASP B 176 1 12 HELIX 14 AB5 LYS B 187 ILE B 191 5 5 HELIX 15 AB6 SER B 192 GLY B 211 1 20 HELIX 16 AB7 ASP B 221 ALA B 223 5 3 HELIX 17 AB8 VAL B 224 HIS B 234 1 11 HELIX 18 AB9 ASP B 272 GLU B 278 1 7 HELIX 19 AC1 ILE B 281 ARG B 295 1 15 HELIX 20 AC2 ARG B 295 GLY B 309 1 15 SHEET 1 AA1 6 GLU A 82 ILE A 88 0 SHEET 2 AA1 6 LEU A 95 ASP A 101 -1 O LEU A 97 N VAL A 86 SHEET 3 AA1 6 GLU A 37 GLY A 44 1 N LEU A 40 O THR A 98 SHEET 4 AA1 6 VAL A 146 ILE A 153 1 O CYS A 148 N MET A 41 SHEET 5 AA1 6 ILE A 177 ILE A 181 1 O VAL A 180 N ILE A 153 SHEET 6 AA1 6 PHE A 237 SER A 238 1 O PHE A 237 N ILE A 181 SHEET 1 AA2 3 LEU A 245 ALA A 248 0 SHEET 2 AA2 3 LYS A 251 LEU A 257 -1 O VAL A 253 N ILE A 246 SHEET 3 AA2 3 VAL A 262 GLU A 264 -1 O VAL A 263 N ARG A 256 SHEET 1 AA3 6 ARG B 82 GLN B 91 0 SHEET 2 AA3 6 GLN B 96 VAL B 105 -1 O VAL B 105 N ARG B 82 SHEET 3 AA3 6 PHE B 43 VAL B 50 1 N ILE B 47 O VAL B 102 SHEET 4 AA3 6 VAL B 152 ILE B 157 1 O VAL B 152 N LEU B 48 SHEET 5 AA3 6 ILE B 181 ILE B 185 1 O ILE B 184 N ILE B 157 SHEET 6 AA3 6 PHE B 237 ALA B 238 1 O PHE B 237 N ILE B 185 SHEET 1 AA4 3 GLU B 245 VAL B 248 0 SHEET 2 AA4 3 LYS B 251 TYR B 258 -1 O VAL B 253 N VAL B 246 SHEET 3 AA4 3 GLY B 261 GLN B 264 -1 O GLY B 261 N TYR B 258 SSBOND 1 CYS A 111 CYS A 114 1555 1555 2.04 LINK OG SER B 58 MG MG B 402 1555 1555 1.96 LINK O1G GTP B 401 MG MG B 402 1555 1555 2.13 LINK O1B GTP B 401 MG MG B 402 1555 1555 2.45 LINK MG MG B 402 O HOH B 502 1555 1555 1.97 LINK MG MG B 402 O HOH B 508 1555 1555 2.00 LINK MG MG B 402 O HOH B 513 1555 1555 2.01 CISPEP 1 ILE A 235 PRO A 236 0 -0.94 CISPEP 2 LEU B 235 PRO B 236 0 1.64 SITE 1 AC1 19 GLY A 47 LEU A 48 GLY A 49 LYS A 50 SITE 2 AC1 19 SER A 51 THR A 52 ARG A 66 LYS A 183 SITE 3 AC1 19 ASP A 185 VAL A 240 GLY A 241 ARG A 256 SITE 4 AC1 19 TYR A 258 HOH A1519 HOH A1528 THR B 160 SITE 5 AC1 19 HIS B 162 THR B 190 GLU B 195 SITE 1 AC2 23 HIS A 158 THR A 186 GLU A 191 HOH A1533 SITE 2 AC2 23 THR B 53 GLY B 54 ILE B 55 GLY B 56 SITE 3 AC2 23 LYS B 57 SER B 58 THR B 59 ALA B 74 SITE 4 AC2 23 LYS B 187 ASP B 189 VAL B 240 GLY B 241 SITE 5 AC2 23 ARG B 256 TYR B 258 MG B 402 HOH B 502 SITE 6 AC2 23 HOH B 508 HOH B 509 HOH B 513 SITE 1 AC3 6 SER B 58 THR B 71 GTP B 401 HOH B 502 SITE 2 AC3 6 HOH B 508 HOH B 513 CRYST1 52.754 82.773 78.144 90.00 103.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018956 0.000000 0.004597 0.00000 SCALE2 0.000000 0.012081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013168 0.00000