PDB Short entry for 6VI4 HEADER MEMBRANE PROTEIN 11-JAN-20 6VI4 TITLE NANOBODY-ENABLED MONITORING OF KAPPA OPIOID RECEPTOR STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAPPA OPIOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KOR-1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY 6; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OPRK1, OPRK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS G PROTEIN-COUPLED OPIOID RECEPTOR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.CHE,B.L.ROTH REVDAT 2 11-OCT-23 6VI4 1 REMARK REVDAT 1 18-MAR-20 6VI4 0 JRNL AUTH T.CHE,J.ENGLISH,B.E.KRUMM,K.KIM,E.PARDON,R.H.J.OLSEN,S.WANG, JRNL AUTH 2 S.ZHANG,J.F.DIBERTO,N.SCIAKY,F.I.CARROLL,J.STEYAERT, JRNL AUTH 3 D.WACKER,B.L.ROTH JRNL TITL NANOBODY-ENABLED MONITORING OF KAPPA OPIOID RECEPTOR STATES. JRNL REF NAT COMMUN V. 11 1145 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32123179 JRNL DOI 10.1038/S41467-020-14889-7 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 26282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0100 - 6.8400 0.98 2886 161 0.2427 0.2650 REMARK 3 2 6.8300 - 5.4400 0.99 2857 120 0.2846 0.2542 REMARK 3 3 5.4400 - 4.7500 0.99 2809 141 0.2108 0.2466 REMARK 3 4 4.7500 - 4.3200 0.99 2757 149 0.2127 0.2449 REMARK 3 5 4.3200 - 4.0100 0.99 2790 125 0.2233 0.2408 REMARK 3 6 4.0100 - 3.7700 0.99 2753 147 0.2369 0.3211 REMARK 3 7 3.7700 - 3.5900 0.99 2743 154 0.2565 0.3141 REMARK 3 8 3.5900 - 3.4300 0.99 2731 162 0.2734 0.3118 REMARK 3 9 3.4300 - 3.3000 0.97 2674 123 0.3108 0.3877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6180 REMARK 3 ANGLE : 1.344 8449 REMARK 3 CHIRALITY : 0.085 1027 REMARK 3 PLANARITY : 0.008 1026 REMARK 3 DIHEDRAL : 16.364 2105 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26340 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.298 REMARK 200 RESOLUTION RANGE LOW (A) : 30.013 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.11400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DJH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.0, 360-400 MM REMARK 280 AMMONIUM CITRATE DIBASIC, 28-32% PEG400, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.19700 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.55000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.19700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 51.19700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -108.19100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.55000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 ILE A 54 REMARK 465 SER A 55 REMARK 465 PRO A 56 REMARK 465 ALA A 57 REMARK 465 ILE A 58 REMARK 465 PRO A 59 REMARK 465 SER A 301 REMARK 465 THR A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 SER A 305 REMARK 465 THR A 306 REMARK 465 LYS A 349 REMARK 465 MET A 350 REMARK 465 ARG A 351 REMARK 465 MET A 352 REMARK 465 GLU A 353 REMARK 465 ARG A 354 REMARK 465 GLN A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 SER A 358 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 ILE B 54 REMARK 465 SER B 55 REMARK 465 PRO B 56 REMARK 465 ALA B 57 REMARK 465 ILE B 58 REMARK 465 PRO B 59 REMARK 465 VAL B 60 REMARK 465 PHE B 214 REMARK 465 PRO B 215 REMARK 465 ASP B 216 REMARK 465 ASP B 217 REMARK 465 SER B 301 REMARK 465 THR B 302 REMARK 465 SER B 303 REMARK 465 HIS B 304 REMARK 465 SER B 305 REMARK 465 THR B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 348 REMARK 465 LYS B 349 REMARK 465 MET B 350 REMARK 465 ARG B 351 REMARK 465 MET B 352 REMARK 465 GLU B 353 REMARK 465 ARG B 354 REMARK 465 GLN B 355 REMARK 465 SER B 356 REMARK 465 THR B 357 REMARK 465 SER B 358 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 41 REMARK 465 VAL C 42 REMARK 465 SER C 43 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 GLU C 130 REMARK 465 PRO C 131 REMARK 465 GLU C 132 REMARK 465 ALA C 133 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 41 REMARK 465 VAL D 42 REMARK 465 SER D 43 REMARK 465 GLY D 44 REMARK 465 ASN D 45 REMARK 465 GLN D 46 REMARK 465 HIS D 126 REMARK 465 HIS D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 465 GLU D 130 REMARK 465 PRO D 131 REMARK 465 GLU D 132 REMARK 465 ALA D 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 62 CG1 CG2 CD1 REMARK 470 THR A 63 OG1 CG2 REMARK 470 TYR A 66 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 THR A 110 OG1 CG2 REMARK 470 LEU A 120 CG CD1 CD2 REMARK 470 SER A 123 OG REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 VAL A 164 CG1 CG2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 PHE A 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ILE A 180 CG1 CG2 CD1 REMARK 470 SER A 188 OG REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 VAL A 205 CG1 CG2 REMARK 470 ASP A 206 CG OD1 OD2 REMARK 470 VAL A 207 CG1 CG2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 ASP A 217 CG OD1 OD2 REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 SER A 260 OG REMARK 470 SER A 262 OG REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 VAL A 296 CG1 CG2 REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 SER A 310 OG REMARK 470 SER A 311 OG REMARK 470 PHE A 332 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 LEU A 348 CG CD1 CD2 REMARK 470 ILE B 61 CG1 CG2 CD1 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 THR B 88 OG1 CG2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 ASP B 128 CG OD1 OD2 REMARK 470 TYR B 140 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 164 CG1 CG2 REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 PHE B 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 171 OG1 CG2 REMARK 470 LEU B 196 CG CD1 CD2 REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 VAL B 201 CG1 CG2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 VAL B 205 CG1 CG2 REMARK 470 ASP B 206 CG OD1 OD2 REMARK 470 VAL B 207 CG1 CG2 REMARK 470 ASP B 218 CG OD1 OD2 REMARK 470 TYR B 219 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 220 OG REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 SER B 255 OG REMARK 470 VAL B 256 CG1 CG2 REMARK 470 SER B 260 OG REMARK 470 SER B 262 OG REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 VAL B 296 CG1 CG2 REMARK 470 SER B 310 OG REMARK 470 PHE B 344 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 LEU C 13 CG CD1 CD2 REMARK 470 GLN C 15 CG CD OE1 NE2 REMARK 470 SER C 27 OG REMARK 470 ASN C 45 CG OD1 ND2 REMARK 470 LEU C 49 CG CD1 CD2 REMARK 470 SER C 52 OG REMARK 470 SER C 58 OG REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 SER C 64 OG REMARK 470 VAL C 65 CG1 CG2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 LYS C 77 CG CD CE NZ REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 VAL C 121 CG1 CG2 REMARK 470 SER C 122 OG REMARK 470 SER C 123 OG REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 470 SER D 27 OG REMARK 470 THR D 29 OG1 CG2 REMARK 470 LYS D 60 CG CD CE NZ REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 GLU D 90 CG CD OE1 OE2 REMARK 470 GLN D 115 CG CD OE1 NE2 REMARK 470 SER D 122 OG REMARK 470 SER D 123 OG REMARK 470 HIS D 124 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 125 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 90 58.98 -109.34 REMARK 500 ASP A 216 1.07 -66.93 REMARK 500 SER A 255 -32.67 -132.31 REMARK 500 PHE B 235 -60.35 -120.02 REMARK 500 LEU B 299 41.07 -90.40 REMARK 500 ARG C 47 103.92 -55.18 REMARK 500 LYS C 60 114.76 -162.62 REMARK 500 ALA C 93 -168.64 -168.33 REMARK 500 TYR D 34 -60.10 -121.19 REMARK 500 SER D 123 -126.12 59.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDC B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR B 402 DBREF 6VI4 A 54 358 UNP P41145 OPRK_HUMAN 54 358 DBREF 6VI4 B 54 358 UNP P41145 OPRK_HUMAN 54 358 DBREF 6VI4 C 1 133 PDB 6VI4 6VI4 1 133 DBREF 6VI4 D 1 133 PDB 6VI4 6VI4 1 133 SEQADV 6VI4 GLY A 52 UNP P41145 EXPRESSION TAG SEQADV 6VI4 SER A 53 UNP P41145 EXPRESSION TAG SEQADV 6VI4 LEU A 135 UNP P41145 ILE 135 ENGINEERED MUTATION SEQADV 6VI4 GLY B 52 UNP P41145 EXPRESSION TAG SEQADV 6VI4 SER B 53 UNP P41145 EXPRESSION TAG SEQADV 6VI4 LEU B 135 UNP P41145 ILE 135 ENGINEERED MUTATION SEQRES 1 A 307 GLY SER ILE SER PRO ALA ILE PRO VAL ILE ILE THR ALA SEQRES 2 A 307 VAL TYR SER VAL VAL PHE VAL VAL GLY LEU VAL GLY ASN SEQRES 3 A 307 SER LEU VAL MET PHE VAL ILE ILE ARG TYR THR LYS MET SEQRES 4 A 307 LYS THR ALA THR ASN ILE TYR ILE PHE ASN LEU ALA LEU SEQRES 5 A 307 ALA ASP ALA LEU VAL THR THR THR MET PRO PHE GLN SER SEQRES 6 A 307 THR VAL TYR LEU MET ASN SER TRP PRO PHE GLY ASP VAL SEQRES 7 A 307 LEU CYS LYS ILE VAL LEU SER ILE ASP TYR TYR ASN MET SEQRES 8 A 307 PHE THR SER ILE PHE THR LEU THR MET MET SER VAL ASP SEQRES 9 A 307 ARG TYR ILE ALA VAL CYS HIS PRO VAL LYS ALA LEU ASP SEQRES 10 A 307 PHE ARG THR PRO LEU LYS ALA LYS ILE ILE ASN ILE CYS SEQRES 11 A 307 ILE TRP LEU LEU SER SER SER VAL GLY ILE SER ALA ILE SEQRES 12 A 307 VAL LEU GLY GLY THR LYS VAL ARG GLU ASP VAL ASP VAL SEQRES 13 A 307 ILE GLU CYS SER LEU GLN PHE PRO ASP ASP ASP TYR SER SEQRES 14 A 307 TRP TRP ASP LEU PHE MET LYS ILE CYS VAL PHE ILE PHE SEQRES 15 A 307 ALA PHE VAL ILE PRO VAL LEU ILE ILE ILE VAL CYS TYR SEQRES 16 A 307 THR LEU MET ILE LEU ARG LEU LYS SER VAL ARG LEU LEU SEQRES 17 A 307 SER GLY SER ARG GLU LYS ASP ARG ASN LEU ARG ARG ILE SEQRES 18 A 307 THR ARG LEU VAL LEU VAL VAL VAL ALA VAL PHE VAL VAL SEQRES 19 A 307 CYS TRP THR PRO ILE HIS ILE PHE ILE LEU VAL GLU ALA SEQRES 20 A 307 LEU GLY SER THR SER HIS SER THR ALA ALA LEU SER SER SEQRES 21 A 307 TYR TYR PHE CYS ILE ALA LEU GLY TYR THR ASN SER SER SEQRES 22 A 307 LEU ASN PRO ILE LEU TYR ALA PHE LEU ASP GLU ASN PHE SEQRES 23 A 307 LYS ARG CYS PHE ARG ASP PHE CYS PHE PRO LEU LYS MET SEQRES 24 A 307 ARG MET GLU ARG GLN SER THR SER SEQRES 1 B 307 GLY SER ILE SER PRO ALA ILE PRO VAL ILE ILE THR ALA SEQRES 2 B 307 VAL TYR SER VAL VAL PHE VAL VAL GLY LEU VAL GLY ASN SEQRES 3 B 307 SER LEU VAL MET PHE VAL ILE ILE ARG TYR THR LYS MET SEQRES 4 B 307 LYS THR ALA THR ASN ILE TYR ILE PHE ASN LEU ALA LEU SEQRES 5 B 307 ALA ASP ALA LEU VAL THR THR THR MET PRO PHE GLN SER SEQRES 6 B 307 THR VAL TYR LEU MET ASN SER TRP PRO PHE GLY ASP VAL SEQRES 7 B 307 LEU CYS LYS ILE VAL LEU SER ILE ASP TYR TYR ASN MET SEQRES 8 B 307 PHE THR SER ILE PHE THR LEU THR MET MET SER VAL ASP SEQRES 9 B 307 ARG TYR ILE ALA VAL CYS HIS PRO VAL LYS ALA LEU ASP SEQRES 10 B 307 PHE ARG THR PRO LEU LYS ALA LYS ILE ILE ASN ILE CYS SEQRES 11 B 307 ILE TRP LEU LEU SER SER SER VAL GLY ILE SER ALA ILE SEQRES 12 B 307 VAL LEU GLY GLY THR LYS VAL ARG GLU ASP VAL ASP VAL SEQRES 13 B 307 ILE GLU CYS SER LEU GLN PHE PRO ASP ASP ASP TYR SER SEQRES 14 B 307 TRP TRP ASP LEU PHE MET LYS ILE CYS VAL PHE ILE PHE SEQRES 15 B 307 ALA PHE VAL ILE PRO VAL LEU ILE ILE ILE VAL CYS TYR SEQRES 16 B 307 THR LEU MET ILE LEU ARG LEU LYS SER VAL ARG LEU LEU SEQRES 17 B 307 SER GLY SER ARG GLU LYS ASP ARG ASN LEU ARG ARG ILE SEQRES 18 B 307 THR ARG LEU VAL LEU VAL VAL VAL ALA VAL PHE VAL VAL SEQRES 19 B 307 CYS TRP THR PRO ILE HIS ILE PHE ILE LEU VAL GLU ALA SEQRES 20 B 307 LEU GLY SER THR SER HIS SER THR ALA ALA LEU SER SER SEQRES 21 B 307 TYR TYR PHE CYS ILE ALA LEU GLY TYR THR ASN SER SER SEQRES 22 B 307 LEU ASN PRO ILE LEU TYR ALA PHE LEU ASP GLU ASN PHE SEQRES 23 B 307 LYS ARG CYS PHE ARG ASP PHE CYS PHE PRO LEU LYS MET SEQRES 24 B 307 ARG MET GLU ARG GLN SER THR SER SEQRES 1 C 133 MET ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU SEQRES 2 C 133 VAL GLN ALA GLY GLU SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 C 133 SER GLY THR ILE PHE ARG LEU TYR ASP MET GLY TRP TYR SEQRES 4 C 133 ARG ARG VAL SER GLY ASN GLN ARG GLU LEU VAL ALA SER SEQRES 5 C 133 ILE THR SER GLY GLY SER THR LYS TYR GLY ASP SER VAL SEQRES 6 C 133 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 C 133 THR VAL TYR LEU GLN MET SER SER LEU LYS PRO GLU ASP SEQRES 8 C 133 THR ALA VAL TYR TYR CYS ASN ALA GLU TYR ARG THR GLY SEQRES 9 C 133 ILE TRP GLU GLU LEU LEU ASP GLY TRP GLY GLN GLY THR SEQRES 10 C 133 GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS GLU SEQRES 11 C 133 PRO GLU ALA SEQRES 1 D 133 MET ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU SEQRES 2 D 133 VAL GLN ALA GLY GLU SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 D 133 SER GLY THR ILE PHE ARG LEU TYR ASP MET GLY TRP TYR SEQRES 4 D 133 ARG ARG VAL SER GLY ASN GLN ARG GLU LEU VAL ALA SER SEQRES 5 D 133 ILE THR SER GLY GLY SER THR LYS TYR GLY ASP SER VAL SEQRES 6 D 133 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 D 133 THR VAL TYR LEU GLN MET SER SER LEU LYS PRO GLU ASP SEQRES 8 D 133 THR ALA VAL TYR TYR CYS ASN ALA GLU TYR ARG THR GLY SEQRES 9 D 133 ILE TRP GLU GLU LEU LEU ASP GLY TRP GLY GLN GLY THR SEQRES 10 D 133 GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS GLU SEQRES 11 D 133 PRO GLU ALA HET JDC A 401 34 HET JDC B 401 34 HET CLR B 402 28 HETNAM JDC (3R)-7-HYDROXY-N-{(2S)-1-[(3R,4R)-4-(3-HYDROXYPHENYL)- HETNAM 2 JDC 3,4-DIMETHYLPIPERIDIN-1-YL]-3-METHYLBUTAN-2-YL}-1,2,3, HETNAM 3 JDC 4-TETRAHYDROISOQUINOLINE-3-CARBOXAMIDE HETNAM CLR CHOLESTEROL FORMUL 5 JDC 2(C28 H39 N3 O3) FORMUL 7 CLR C27 H46 O HELIX 1 AA1 ILE A 61 TYR A 87 1 27 HELIX 2 AA2 THR A 92 THR A 111 1 20 HELIX 3 AA3 THR A 111 ASN A 122 1 12 HELIX 4 AA4 GLY A 127 CYS A 161 1 35 HELIX 5 AA5 LYS A 165 ARG A 170 1 6 HELIX 6 AA6 THR A 171 LEU A 196 1 26 HELIX 7 AA7 ASP A 218 VAL A 236 1 19 HELIX 8 AA8 VAL A 236 LYS A 254 1 19 HELIX 9 AA9 SER A 262 GLY A 300 1 39 HELIX 10 AB1 SER A 310 ASP A 334 1 25 HELIX 11 AB2 ASP A 334 PHE A 346 1 13 HELIX 12 AB3 THR B 63 TYR B 87 1 25 HELIX 13 AB4 THR B 88 LYS B 91 5 4 HELIX 14 AB5 THR B 92 VAL B 108 1 17 HELIX 15 AB6 THR B 111 ASN B 122 1 12 HELIX 16 AB7 ASP B 128 HIS B 162 1 35 HELIX 17 AB8 LYS B 165 ARG B 170 1 6 HELIX 18 AB9 THR B 171 LEU B 196 1 26 HELIX 19 AC1 TYR B 219 PHE B 235 1 17 HELIX 20 AC2 PHE B 235 VAL B 256 1 22 HELIX 21 AC3 SER B 262 GLU B 297 1 36 HELIX 22 AC4 ALA B 298 GLY B 300 5 3 HELIX 23 AC5 LEU B 309 ASP B 334 1 26 HELIX 24 AC6 ASP B 334 PHE B 346 1 13 HELIX 25 AC7 LYS C 88 THR C 92 5 5 HELIX 26 AC8 LYS D 88 THR D 92 5 5 SHEET 1 AA1 2 GLY A 197 VAL A 201 0 SHEET 2 AA1 2 ILE A 208 LEU A 212 -1 O GLU A 209 N LYS A 200 SHEET 1 AA2 2 GLY B 197 VAL B 201 0 SHEET 2 AA2 2 ILE B 208 LEU B 212 -1 O GLU B 209 N LYS B 200 SHEET 1 AA3 4 VAL C 4 SER C 9 0 SHEET 2 AA3 4 LEU C 20 GLY C 28 -1 O SER C 27 N GLN C 5 SHEET 3 AA3 4 THR C 79 MET C 84 -1 O LEU C 82 N LEU C 22 SHEET 4 AA3 4 PHE C 69 ASP C 74 -1 N SER C 72 O TYR C 81 SHEET 1 AA4 6 GLY C 12 GLN C 15 0 SHEET 2 AA4 6 THR C 117 SER C 122 1 O SER C 122 N VAL C 14 SHEET 3 AA4 6 ALA C 93 ARG C 102 -1 N TYR C 95 O THR C 117 SHEET 4 AA4 6 ARG C 32 ARG C 40 -1 N TYR C 34 O GLU C 100 SHEET 5 AA4 6 GLU C 48 THR C 54 -1 O ALA C 51 N TRP C 38 SHEET 6 AA4 6 THR C 59 TYR C 61 -1 O LYS C 60 N SER C 52 SHEET 1 AA5 4 GLY C 12 GLN C 15 0 SHEET 2 AA5 4 THR C 117 SER C 122 1 O SER C 122 N VAL C 14 SHEET 3 AA5 4 ALA C 93 ARG C 102 -1 N TYR C 95 O THR C 117 SHEET 4 AA5 4 LEU C 109 TRP C 113 -1 O GLY C 112 N ALA C 99 SHEET 1 AA6 4 VAL D 4 SER D 9 0 SHEET 2 AA6 4 LEU D 20 GLY D 28 -1 O SER D 27 N GLN D 5 SHEET 3 AA6 4 THR D 79 MET D 84 -1 O LEU D 82 N LEU D 22 SHEET 4 AA6 4 PHE D 69 ASP D 74 -1 N THR D 70 O GLN D 83 SHEET 1 AA7 6 GLY D 12 GLN D 15 0 SHEET 2 AA7 6 THR D 117 SER D 122 1 O THR D 120 N VAL D 14 SHEET 3 AA7 6 ALA D 93 ARG D 102 -1 N TYR D 95 O THR D 117 SHEET 4 AA7 6 ARG D 32 TYR D 39 -1 N TYR D 39 O TYR D 96 SHEET 5 AA7 6 LEU D 49 THR D 54 -1 O ALA D 51 N TRP D 38 SHEET 6 AA7 6 THR D 59 TYR D 61 -1 O LYS D 60 N SER D 52 SHEET 1 AA8 4 GLY D 12 GLN D 15 0 SHEET 2 AA8 4 THR D 117 SER D 122 1 O THR D 120 N VAL D 14 SHEET 3 AA8 4 ALA D 93 ARG D 102 -1 N TYR D 95 O THR D 117 SHEET 4 AA8 4 LEU D 109 TRP D 113 -1 O LEU D 110 N TYR D 101 SSBOND 1 CYS A 131 CYS A 210 1555 1555 2.01 SSBOND 2 CYS B 131 CYS B 210 1555 1555 2.03 SSBOND 3 CYS C 24 CYS C 97 1555 1555 2.06 SSBOND 4 CYS D 24 CYS D 97 1555 1555 2.05 SITE 1 AC1 8 THR A 111 GLN A 115 VAL A 118 ASP A 138 SITE 2 AC1 8 MET A 142 VAL A 230 ILE A 294 TYR A 320 SITE 1 AC2 11 GLN B 115 VAL B 118 TRP B 124 VAL B 134 SITE 2 AC2 11 ASP B 138 MET B 142 CYS B 210 VAL B 230 SITE 3 AC2 11 HIS B 291 ILE B 316 TYR B 320 SITE 1 AC3 7 ASP A 218 TRP A 221 VAL B 154 TYR B 157 SITE 2 AC3 7 ILE B 158 HIS B 162 ILE B 241 CRYST1 102.394 108.191 155.100 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006447 0.00000