PDB Short entry for 6VXS HEADER VIRAL PROTEIN 24-FEB-20 6VXS TITLE CRYSTAL STRUCTURE OF ADP RIBOSE PHOSPHATASE OF NSP3 FROM SARS COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NSP3,ADP RIBOSE PHOSPHATASE,PL2-PRO,PAPAIN-LIKE PROTEASE, COMPND 5 PAPAIN-LIKE PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.121, 3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS SARS CORONA VIRUS, MACRO DOMAIN, ADP-RIBOSE, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,R.JEDRZEJCZAK,N.MALTSEVA,M.ENDRES,A.MESECAR,K.MICHALSKA, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 9 11-OCT-23 6VXS 1 REMARK REVDAT 8 18-AUG-21 6VXS 1 AUTHOR REVDAT 7 27-JAN-21 6VXS 1 COMPND REVDAT 6 14-OCT-20 6VXS 1 COMPND SOURCE REVDAT 5 30-SEP-20 6VXS 1 JRNL REVDAT 4 06-MAY-20 6VXS 1 COMPND SOURCE DBREF SEQADV REVDAT 3 22-APR-20 6VXS 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES HELIX SHEET SITE REVDAT 3 3 1 ATOM REVDAT 2 25-MAR-20 6VXS 1 SOURCE REVDAT 1 04-MAR-20 6VXS 0 JRNL AUTH K.MICHALSKA,Y.KIM,R.JEDRZEJCZAK,N.I.MALTSEVA,L.STOLS, JRNL AUTH 2 M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURES OF SARS-COV-2 ADP-RIBOSE PHOSPHATASE: JRNL TITL 2 FROM THE APO FORM TO LIGAND COMPLEXES. JRNL REF IUCRJ V. 7 814 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939273 JRNL DOI 10.1107/S2052252520009653 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 15779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7100 - 3.4700 0.91 3242 145 0.1570 0.1741 REMARK 3 2 3.4700 - 2.7500 0.90 3204 155 0.1904 0.2544 REMARK 3 3 2.7500 - 2.4100 0.92 3281 163 0.2094 0.2758 REMARK 3 4 2.4100 - 2.1900 0.83 2906 173 0.2154 0.2623 REMARK 3 5 2.1900 - 2.0300 0.68 2376 134 0.2363 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.519 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2615 REMARK 3 ANGLE : 0.513 3552 REMARK 3 CHIRALITY : 0.040 418 REMARK 3 PLANARITY : 0.003 450 REMARK 3 DIHEDRAL : 14.359 1551 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6135 3.2221 11.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.2113 REMARK 3 T33: 0.1849 T12: 0.0070 REMARK 3 T13: 0.0213 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 2.4532 L22: 3.7274 REMARK 3 L33: 3.6622 L12: -1.1398 REMARK 3 L13: 1.3504 L23: -0.4650 REMARK 3 S TENSOR REMARK 3 S11: 0.1043 S12: -0.5859 S13: -0.0443 REMARK 3 S21: 0.2052 S22: -0.0096 S23: 0.1690 REMARK 3 S31: -0.1395 S32: -0.2935 S33: -0.1897 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2158 -4.1709 7.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1488 REMARK 3 T33: 0.1752 T12: -0.0186 REMARK 3 T13: 0.0084 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.5460 L22: 2.4647 REMARK 3 L33: 3.2082 L12: 0.2150 REMARK 3 L13: 1.2417 L23: 1.7715 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: -0.2499 S13: -0.4923 REMARK 3 S21: 0.3868 S22: 0.0444 S23: 0.0589 REMARK 3 S31: 0.3555 S32: 0.1637 S33: -0.1556 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2061 -10.7482 -3.5846 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1404 REMARK 3 T33: 0.1524 T12: -0.0105 REMARK 3 T13: -0.0163 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.1080 L22: 3.8281 REMARK 3 L33: 2.8237 L12: 0.5196 REMARK 3 L13: -0.1609 L23: -0.9762 REMARK 3 S TENSOR REMARK 3 S11: 0.2475 S12: -0.0265 S13: 0.0915 REMARK 3 S21: 0.1616 S22: -0.2511 S23: 0.1410 REMARK 3 S31: 0.1169 S32: 0.3292 S33: 0.0823 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4740 -13.9811 -11.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1127 REMARK 3 T33: 0.2394 T12: -0.0128 REMARK 3 T13: 0.0363 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.6919 L22: 2.8920 REMARK 3 L33: 5.2564 L12: -1.2572 REMARK 3 L13: 1.3692 L23: -1.7846 REMARK 3 S TENSOR REMARK 3 S11: -0.1562 S12: 0.1577 S13: -0.3431 REMARK 3 S21: 0.1110 S22: -0.1114 S23: 0.1601 REMARK 3 S31: 0.4767 S32: -0.1660 S33: 0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9901 -7.8259 -7.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1900 REMARK 3 T33: 0.1839 T12: -0.0112 REMARK 3 T13: -0.0499 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.4161 L22: 1.2635 REMARK 3 L33: 2.0719 L12: 0.0212 REMARK 3 L13: -0.6436 L23: 0.2991 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: 0.1024 S13: 0.0744 REMARK 3 S21: -0.0298 S22: -0.0031 S23: 0.1885 REMARK 3 S31: 0.0471 S32: 0.0984 S33: -0.2003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2541 1.6622 -8.7645 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.2290 REMARK 3 T33: 0.2037 T12: 0.0097 REMARK 3 T13: -0.0089 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.4511 L22: 2.1093 REMARK 3 L33: 2.6779 L12: -0.7594 REMARK 3 L13: 0.7681 L23: -0.4319 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.9597 S13: 0.1172 REMARK 3 S21: -0.0238 S22: 0.1779 S23: 0.0585 REMARK 3 S31: 0.0134 S32: 0.0580 S33: -0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3188 4.6200 -3.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1366 REMARK 3 T33: 0.1193 T12: 0.0167 REMARK 3 T13: -0.0109 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.1431 L22: 2.5250 REMARK 3 L33: 2.9835 L12: -0.0721 REMARK 3 L13: -1.1271 L23: -1.4147 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.2721 S13: -0.0491 REMARK 3 S21: 0.1247 S22: 0.0431 S23: -0.1382 REMARK 3 S31: -0.1401 S32: 0.1000 S33: -0.0510 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7243 12.2732 0.6607 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1670 REMARK 3 T33: 0.1316 T12: 0.0288 REMARK 3 T13: 0.0273 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.1393 L22: 4.5925 REMARK 3 L33: 4.3465 L12: 1.0849 REMARK 3 L13: 0.6421 L23: -0.7474 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.3083 S13: -0.1009 REMARK 3 S21: 0.3233 S22: 0.0300 S23: 0.4032 REMARK 3 S31: -0.5950 S32: -0.2479 S33: -0.1496 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9351 7.5861 9.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1382 REMARK 3 T33: 0.1734 T12: -0.0228 REMARK 3 T13: 0.0320 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4698 L22: 2.8220 REMARK 3 L33: 3.5184 L12: 1.9006 REMARK 3 L13: 0.8258 L23: 0.8637 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.2825 S13: 0.0128 REMARK 3 S21: 0.1154 S22: 0.0404 S23: -0.0781 REMARK 3 S31: -0.3863 S32: 0.1485 S33: 0.1152 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6312 -18.8095 -38.9943 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.2142 REMARK 3 T33: 0.1699 T12: -0.0168 REMARK 3 T13: -0.0214 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.7846 L22: 2.6340 REMARK 3 L33: 4.8613 L12: -1.3672 REMARK 3 L13: -1.0919 L23: 0.7251 REMARK 3 S TENSOR REMARK 3 S11: 0.1016 S12: 0.4240 S13: 0.1977 REMARK 3 S21: -0.3299 S22: -0.1552 S23: -0.0972 REMARK 3 S31: -0.1229 S32: -0.3058 S33: 0.0525 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2964 -8.2268 -22.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1244 REMARK 3 T33: 0.1781 T12: 0.0247 REMARK 3 T13: 0.0003 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.2290 L22: 1.8488 REMARK 3 L33: 3.1539 L12: 0.8907 REMARK 3 L13: 1.1702 L23: 1.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0090 S13: 0.1580 REMARK 3 S21: -0.0904 S22: 0.0210 S23: -0.1238 REMARK 3 S31: -0.3859 S32: -0.0362 S33: -0.0349 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1906 -12.4980 -22.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.1713 REMARK 3 T33: 0.2263 T12: 0.0331 REMARK 3 T13: -0.0111 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.2157 L22: 0.8739 REMARK 3 L33: 2.0917 L12: 0.8675 REMARK 3 L13: -0.2547 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0962 S13: 0.0917 REMARK 3 S21: -0.0001 S22: 0.0082 S23: 0.1739 REMARK 3 S31: -0.1127 S32: -0.0718 S33: -0.0927 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9308 -22.0963 -21.1451 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.2423 REMARK 3 T33: 0.1652 T12: -0.0142 REMARK 3 T13: -0.0119 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.1548 L22: 3.4155 REMARK 3 L33: 2.6651 L12: 0.3544 REMARK 3 L13: -0.5291 L23: -0.4477 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.4538 S13: -0.0483 REMARK 3 S21: 0.3721 S22: 0.0192 S23: -0.4458 REMARK 3 S31: 0.0489 S32: 0.2124 S33: 0.1448 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4730 -25.0443 -26.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1379 REMARK 3 T33: 0.1086 T12: -0.0064 REMARK 3 T13: -0.0001 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.5424 L22: 2.3079 REMARK 3 L33: 3.0732 L12: 0.4183 REMARK 3 L13: 0.8185 L23: -0.7770 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.3192 S13: -0.0318 REMARK 3 S21: 0.1314 S22: -0.0729 S23: -0.0404 REMARK 3 S31: 0.0055 S32: -0.0452 S33: 0.0486 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1558 -28.2443 -33.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1383 REMARK 3 T33: 0.1747 T12: -0.0046 REMARK 3 T13: -0.0080 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.7632 L22: 2.9776 REMARK 3 L33: 3.7493 L12: -2.1402 REMARK 3 L13: 1.8798 L23: -0.1738 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.1682 S13: -0.2549 REMARK 3 S21: -0.0794 S22: 0.0187 S23: -0.0602 REMARK 3 S31: 0.5149 S32: -0.1839 S33: -0.0220 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1280 -31.7813 -42.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.2428 REMARK 3 T33: 0.1999 T12: 0.0345 REMARK 3 T13: -0.0131 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.2880 L22: 6.9868 REMARK 3 L33: 2.9596 L12: 1.9451 REMARK 3 L13: 2.1679 L23: 4.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.3758 S12: -0.0773 S13: -0.1630 REMARK 3 S21: 0.0102 S22: -0.1320 S23: -0.4795 REMARK 3 S31: 0.2937 S32: -0.1561 S33: -0.0201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 2ACF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 30 %(W/V) PEG3000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 170 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 59.48 -92.32 REMARK 500 HIS A 86 -135.57 58.47 REMARK 500 THR B 13 -169.54 -129.05 REMARK 500 HIS B 86 -138.28 55.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 DBREF 6VXS A 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192 DBREF 6VXS B 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192 SEQADV 6VXS GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQADV 6VXS GLY B 1 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 A 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 A 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 A 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 A 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 A 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 A 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 A 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 A 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 A 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 A 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 A 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 A 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU SEQRES 14 A 170 GLU SEQRES 1 B 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 B 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 B 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 B 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 B 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 B 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 B 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 B 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 B 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 B 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 B 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 B 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 B 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU SEQRES 14 B 170 GLU HET SO4 A 201 5 HET NHE A 202 13 HET SO4 A 203 5 HET SO4 B 201 5 HET EDO B 202 4 HET NHE B 203 13 HET SO4 B 204 5 HETNAM SO4 SULFATE ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 NHE 2(C8 H17 N O3 S) FORMUL 7 EDO C2 H6 O2 FORMUL 10 HOH *139(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 THR A 57 1 11 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ALA A 129 GLY A 133 5 5 HELIX 8 AA8 ASP A 135 VAL A 147 1 13 HELIX 9 AA9 ASP A 157 LEU A 169 1 13 HELIX 10 AB1 ASP B 22 LYS B 31 1 10 HELIX 11 AB2 GLY B 47 THR B 57 1 11 HELIX 12 AB3 ASN B 59 GLY B 73 1 15 HELIX 13 AB4 ASN B 99 GLY B 103 5 5 HELIX 14 AB5 GLN B 107 ASN B 115 1 9 HELIX 15 AB6 PHE B 116 HIS B 119 5 4 HELIX 16 AB7 ALA B 129 GLY B 133 5 5 HELIX 17 AB8 ASP B 135 VAL B 147 1 13 HELIX 18 AB9 ASP B 157 SER B 166 1 10 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 39 0 SHEET 2 AA2 3 HIS A 91 VAL A 96 1 O LEU A 93 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O LEU B 153 N TYR B 17 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O TYR B 152 SHEET 1 AA4 3 VAL B 34 ALA B 39 0 SHEET 2 AA4 3 HIS B 91 VAL B 96 1 O LEU B 93 N ASN B 37 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N LEU B 83 O CYS B 92 SITE 1 AC1 3 ASN A 72 LEU A 75 HOH A 332 SITE 1 AC2 8 VAL A 34 HIS A 91 HIS A 119 GLU A 120 SITE 2 AC2 8 HOH A 304 HOH A 317 ALA B 70 THR B 71 SITE 1 AC3 4 VAL A 155 PHE A 156 ASP A 157 HOH A 344 SITE 1 AC4 4 ASN B 72 LYS B 76 EDO B 202 HOH B 314 SITE 1 AC5 4 HIS A 45 GLY A 46 ASN B 72 SO4 B 201 SITE 1 AC6 8 VAL B 34 GLY B 47 VAL B 82 GLN B 118 SITE 2 AC6 8 HIS B 119 GLU B 120 HOH B 312 HOH B 322 SITE 1 AC7 7 VAL B 155 PHE B 156 ASP B 157 LEU B 160 SITE 2 AC7 7 HOH B 306 HOH B 332 HOH B 347 CRYST1 30.391 37.896 65.400 84.37 82.11 90.11 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032904 0.000065 -0.004589 0.00000 SCALE2 0.000000 0.026388 -0.002635 0.00000 SCALE3 0.000000 0.000000 0.015513 0.00000