PDB Short entry for 6Y10 HEADER OXIDOREDUCTASE 10-FEB-20 6Y10 TITLE X-RAY STRUCTURE OF LACTOBACILLUS BREVIS ALCOHOL DEHYDROGENASE MUTANT TITLE 2 Q126H COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-SPECIFIC ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1580; SOURCE 4 GENE: RADH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDE BINDING OXIDOREDUCTASE ACTIVITY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HERMANN,D.BISCHOFF,R.JANOWSKI,D.NIESSING,P.GROB,D.HEKMAT,D.WEUSTER- AUTHOR 2 BOTZ REVDAT 3 09-JUN-21 6Y10 1 JRNL REVDAT 2 30-SEP-20 6Y10 1 COMPND REMARK LINK SITE REVDAT 2 2 1 ATOM REVDAT 1 19-FEB-20 6Y10 0 JRNL AUTH J.HERMANN,D.BISCHOFF,P.GROB,R.JANOWSKI,D.HEKMAT,D.NIESSING, JRNL AUTH 2 M.ZACHARIAS,D.WEUSTER-BOTZ JRNL TITL CONTROLLING PROTEIN CRYSTALLIZATION BY FREE ENERGY GUIDED JRNL TITL 2 DESIGN OF INTERACTIONS AT CRYSTAL CONTACTS JRNL REF CRYSTALS V. 11 2021 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST11060588 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 72057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2162 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2001 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2950 ; 1.489 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4692 ; 1.547 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;33.193 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;11.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2510 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 422 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4156 ; 1.126 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Y10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : XSCALE MAR 15, 2019 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 46.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6H07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 G/L LBADH , 20 MM REMARK 280 HEPES/NAOH PH 7.0, 1 MM MGCL2 AND PRECIPITATION BUFFER (1 MM REMARK 280 TRIS/HCL PH 7.0, 50 MM MGCL2 AND 100 G/L PEG 550 MME), REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.28500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.73500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.28500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.73500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.28500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.73500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.28500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 301 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 755 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 141 O HOH A 401 1.50 REMARK 500 N SER A 1 O HOH A 403 2.00 REMARK 500 OE2 GLU A 218 O HOH A 404 2.01 REMARK 500 OG1 THR A 52 OD1 ASP A 54 2.03 REMARK 500 O HOH A 638 O HOH A 763 2.04 REMARK 500 O HOH A 649 O HOH A 720 2.11 REMARK 500 OD2 ASP A 54 O HOH A 405 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 495 O HOH A 495 3555 1.69 REMARK 500 O HOH A 445 O HOH A 445 3555 1.70 REMARK 500 O HOH A 405 O HOH A 405 2565 1.88 REMARK 500 O HOH A 420 O HOH A 648 1655 1.94 REMARK 500 O HOH A 457 O HOH A 457 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 138.64 -172.46 REMARK 500 SER A 141 -132.11 -89.38 REMARK 500 SER A 142 154.78 70.47 REMARK 500 LYS A 210 -72.11 -105.14 REMARK 500 ASP A 245 12.28 -142.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 800 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 8.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 209 O REMARK 620 2 THR A 209 O 0.0 REMARK 620 3 EDO A 304 O1 68.5 68.5 REMARK 620 4 EDO A 304 O1 68.5 68.5 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 249 OG1 REMARK 620 2 HOH A 541 O 104.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 251 O REMARK 620 2 GLN A 251 O 0.0 REMARK 620 3 HOH A 475 O 89.8 89.8 REMARK 620 4 HOH A 475 O 89.8 89.8 0.0 REMARK 620 5 HOH A 488 O 88.7 88.7 90.3 90.3 REMARK 620 6 HOH A 488 O 91.3 91.3 90.3 90.3 179.3 REMARK 620 7 HOH A 587 O 90.2 90.2 180.0 180.0 89.7 89.7 REMARK 620 8 HOH A 587 O 90.2 90.2 180.0 180.0 89.7 89.7 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H07 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF WILDTYPE DBREF 6Y10 A 1 251 UNP Q84EX5 Q84EX5_LACBR 2 252 SEQADV 6Y10 MET A -10 UNP Q84EX5 INITIATING METHIONINE SEQADV 6Y10 GLY A -9 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -8 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -7 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -6 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -5 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -4 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A -3 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 GLY A -2 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 SER A -1 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 GLY A 0 UNP Q84EX5 EXPRESSION TAG SEQADV 6Y10 HIS A 126 UNP Q84EX5 GLN 127 ENGINEERED MUTATION SEQRES 1 A 262 MET GLY HIS HIS HIS HIS HIS HIS GLY SER GLY SER ASN SEQRES 2 A 262 ARG LEU ASP GLY LYS VAL ALA ILE ILE THR GLY GLY THR SEQRES 3 A 262 LEU GLY ILE GLY LEU ALA ILE ALA THR LYS PHE VAL GLU SEQRES 4 A 262 GLU GLY ALA LYS VAL MET ILE THR GLY ARG HIS SER ASP SEQRES 5 A 262 VAL GLY GLU LYS ALA ALA LYS SER VAL GLY THR PRO ASP SEQRES 6 A 262 GLN ILE GLN PHE PHE GLN HIS ASP SER SER ASP GLU ASP SEQRES 7 A 262 GLY TRP THR LYS LEU PHE ASP ALA THR GLU LYS ALA PHE SEQRES 8 A 262 GLY PRO VAL SER THR LEU VAL ASN ASN ALA GLY ILE ALA SEQRES 9 A 262 VAL ASN LYS SER VAL GLU GLU THR THR THR ALA GLU TRP SEQRES 10 A 262 ARG LYS LEU LEU ALA VAL ASN LEU ASP GLY VAL PHE PHE SEQRES 11 A 262 GLY THR ARG LEU GLY ILE HIS ARG MET LYS ASN LYS GLY SEQRES 12 A 262 LEU GLY ALA SER ILE ILE ASN MET SER SER ILE GLU GLY SEQRES 13 A 262 PHE VAL GLY ASP PRO SER LEU GLY ALA TYR ASN ALA SER SEQRES 14 A 262 LYS GLY ALA VAL ARG ILE MET SER LYS SER ALA ALA LEU SEQRES 15 A 262 ASP CYS ALA LEU LYS ASP TYR ASP VAL ARG VAL ASN THR SEQRES 16 A 262 VAL HIS PRO GLY TYR ILE LYS THR PRO LEU VAL ASP ASP SEQRES 17 A 262 LEU PRO GLY ALA GLU GLU ALA MET SER GLN ARG THR LYS SEQRES 18 A 262 THR PRO MET GLY HIS ILE GLY GLU PRO ASN ASP ILE ALA SEQRES 19 A 262 TYR ILE CYS VAL TYR LEU ALA SER ASN GLU SER LYS PHE SEQRES 20 A 262 ALA THR GLY SER GLU PHE VAL VAL ASP GLY GLY TYR THR SEQRES 21 A 262 ALA GLN HET MG A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET MG A 310 1 HET MG A 311 1 HET MG A 312 1 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 4(MG 2+) FORMUL 3 EDO 8(C2 H6 O2) FORMUL 14 HOH *407(H2 O) HELIX 1 AA1 LEU A 16 GLU A 29 1 14 HELIX 2 AA2 HIS A 39 GLY A 51 1 13 HELIX 3 AA3 ASP A 65 GLY A 81 1 17 HELIX 4 AA4 THR A 102 LEU A 114 1 13 HELIX 5 AA5 LEU A 114 LYS A 129 1 16 HELIX 6 AA6 SER A 142 PHE A 146 5 5 HELIX 7 AA7 LEU A 152 LYS A 176 1 25 HELIX 8 AA8 THR A 192 ASP A 197 1 6 HELIX 9 AA9 GLY A 200 GLN A 207 1 8 HELIX 10 AB1 GLU A 218 SER A 231 1 14 HELIX 11 AB2 ASN A 232 LYS A 235 5 4 HELIX 12 AB3 GLY A 247 GLN A 251 5 5 SHEET 1 AA1 7 ILE A 56 GLN A 60 0 SHEET 2 AA1 7 LYS A 32 GLY A 37 1 N ILE A 35 O GLN A 57 SHEET 3 AA1 7 VAL A 8 ILE A 11 1 N ALA A 9 O LYS A 32 SHEET 4 AA1 7 THR A 85 ASN A 88 1 O VAL A 87 N ILE A 10 SHEET 5 AA1 7 ALA A 135 MET A 140 1 O ILE A 138 N LEU A 86 SHEET 6 AA1 7 VAL A 180 PRO A 187 1 O ARG A 181 N ILE A 137 SHEET 7 AA1 7 GLU A 241 VAL A 244 1 O PHE A 242 N HIS A 186 LINK O THR A 209 MG MG A 311 1555 1555 2.72 LINK O THR A 209 MG MG A 311 1555 4555 2.74 LINK OG1 THR A 249 MG MG A 312 1555 3555 2.79 LINK O GLN A 251 MG MG A 301 1555 1555 2.08 LINK O GLN A 251 MG MG A 301 1555 4555 2.08 LINK MG MG A 301 O HOH A 475 1555 1555 2.03 LINK MG MG A 301 O HOH A 475 1555 4555 2.03 LINK MG MG A 301 O HOH A 488 1555 1555 2.07 LINK MG MG A 301 O HOH A 488 1555 4555 2.07 LINK MG MG A 301 O HOH A 587 1555 1555 2.02 LINK MG MG A 301 O HOH A 587 1555 4555 2.02 LINK O1 EDO A 304 MG MG A 311 1555 1555 2.74 LINK O1 EDO A 304 MG MG A 311 1555 4555 2.75 LINK MG MG A 312 O HOH A 541 1555 3555 2.80 CRYST1 56.050 80.570 113.470 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008813 0.00000