PDB Short entry for 6Y2C HEADER RNA BINDING PROTEIN 15-FEB-20 6Y2C TITLE CRYSTAL STRUCTURE OF THE THIRD KH DOMAIN OF FUBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAR UPSTREAM ELEMENT-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FUSE-BINDING PROTEIN 1,DNA HELICASE V,HDH V; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FUBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSDNA/RNA BINDING MOTIF, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.NI,A.C.JOERGER,A.CHAIKUAD,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 2 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 24-JAN-24 6Y2C 1 REMARK REVDAT 2 19-AUG-20 6Y2C 1 JRNL LINK REVDAT 1 25-MAR-20 6Y2C 0 JRNL AUTH X.NI,S.KNAPP,A.CHAIKUAD JRNL TITL COMPARATIVE STRUCTURAL ANALYSES AND NUCLEOTIDE-BINDING JRNL TITL 2 CHARACTERIZATION OF THE FOUR KH DOMAINS OF FUBP1. JRNL REF SCI REP V. 10 13459 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32778776 JRNL DOI 10.1038/S41598-020-69832-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 12851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1233 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1215 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1649 ; 1.455 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2810 ; 1.300 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 153 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;31.622 ;21.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;15.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 171 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1358 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 240 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 277 347 B 277 347 1955 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5210 -12.9572 9.0603 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.0607 REMARK 3 T33: 0.0947 T12: -0.0512 REMARK 3 T13: 0.0053 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 5.8780 L22: 3.4798 REMARK 3 L33: 4.1535 L12: 2.3901 REMARK 3 L13: 1.3113 L23: 1.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.0162 S13: -0.5100 REMARK 3 S21: 0.1302 S22: 0.2367 S23: -0.5558 REMARK 3 S31: 0.2674 S32: 0.1960 S33: -0.1574 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 259 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5626 9.6043 11.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.0786 REMARK 3 T33: 0.0133 T12: -0.0895 REMARK 3 T13: -0.0048 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.5922 L22: 3.5021 REMARK 3 L33: 3.6762 L12: 0.3260 REMARK 3 L13: -0.8079 L23: -2.2762 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: 0.0425 S13: 0.1041 REMARK 3 S21: 0.1398 S22: 0.1519 S23: -0.0737 REMARK 3 S31: -0.1180 S32: 0.1243 S33: -0.0805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6Y2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 10% ETHYLENE GLYCOL, REMARK 280 0.015M ZINKCHLORID, 0.1 M MES, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.59533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.29767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.29767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.59533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 259 REMARK 465 MET A 260 REMARK 465 PHE A 261 REMARK 465 ARG A 262 REMARK 465 GLU A 263 REMARK 465 VAL A 264 REMARK 465 ARG A 265 REMARK 465 ASN A 266 REMARK 465 GLU A 267 REMARK 465 TYR A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 ARG A 271 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 ASN A 275 REMARK 465 GLU A 276 REMARK 465 GLY A 349 REMARK 465 ASN A 350 REMARK 465 PRO A 351 REMARK 465 TYR B 268 REMARK 465 GLY B 269 REMARK 465 SER B 270 REMARK 465 ARG B 271 REMARK 465 ILE B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 ASN B 275 REMARK 465 PRO B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 337 CD GLU A 337 OE1 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 304 OD1 REMARK 620 2 HIS A 334 NE2 94.9 REMARK 620 3 ASP B 341 OD2 97.2 106.8 REMARK 620 4 HOH B 519 O 97.7 106.9 0.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 337 OE1 REMARK 620 2 ASP A 341 OD2 108.4 REMARK 620 3 HOH A 608 O 95.6 122.6 REMARK 620 4 GLU B 337 OE1 132.6 48.2 77.0 REMARK 620 5 GLU B 337 OE2 131.3 51.5 73.2 3.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 259 N REMARK 620 2 SER B 259 O 74.7 REMARK 620 3 ASP B 304 OD2 126.0 98.3 REMARK 620 4 HIS B 334 NE2 118.3 96.2 115.6 REMARK 620 5 HOH B 508 O 93.3 167.5 91.8 86.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 408 DBREF 6Y2C A 261 351 UNP Q96AE4 FUBP1_HUMAN 260 350 DBREF 6Y2C B 261 351 UNP Q96AE4 FUBP1_HUMAN 260 350 SEQADV 6Y2C SER A 259 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2C MET A 260 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2C SER B 259 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2C MET B 260 UNP Q96AE4 EXPRESSION TAG SEQRES 1 A 93 SER MET PHE ARG GLU VAL ARG ASN GLU TYR GLY SER ARG SEQRES 2 A 93 ILE GLY GLY ASN GLU GLY ILE ASP VAL PRO ILE PRO ARG SEQRES 3 A 93 PHE ALA VAL GLY ILE VAL ILE GLY ARG ASN GLY GLU MET SEQRES 4 A 93 ILE LYS LYS ILE GLN ASN ASP ALA GLY VAL ARG ILE GLN SEQRES 5 A 93 PHE LYS PRO ASP ASP GLY THR THR PRO GLU ARG ILE ALA SEQRES 6 A 93 GLN ILE THR GLY PRO PRO ASP ARG CYS GLN HIS ALA ALA SEQRES 7 A 93 GLU ILE ILE THR ASP LEU LEU ARG SER VAL GLN ALA GLY SEQRES 8 A 93 ASN PRO SEQRES 1 B 93 SER MET PHE ARG GLU VAL ARG ASN GLU TYR GLY SER ARG SEQRES 2 B 93 ILE GLY GLY ASN GLU GLY ILE ASP VAL PRO ILE PRO ARG SEQRES 3 B 93 PHE ALA VAL GLY ILE VAL ILE GLY ARG ASN GLY GLU MET SEQRES 4 B 93 ILE LYS LYS ILE GLN ASN ASP ALA GLY VAL ARG ILE GLN SEQRES 5 B 93 PHE LYS PRO ASP ASP GLY THR THR PRO GLU ARG ILE ALA SEQRES 6 B 93 GLN ILE THR GLY PRO PRO ASP ARG CYS GLN HIS ALA ALA SEQRES 7 B 93 GLU ILE ILE THR ASP LEU LEU ARG SER VAL GLN ALA GLY SEQRES 8 B 93 ASN PRO HET EDO A 501 4 HET EDO A 502 4 HET ZN A 503 1 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET ZN B 407 1 HET ZN B 408 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 5 ZN 3(ZN 2+) FORMUL 14 HOH *28(H2 O) HELIX 1 AA1 ALA A 286 GLY A 292 1 7 HELIX 2 AA2 GLY A 295 GLY A 306 1 12 HELIX 3 AA3 PRO A 328 VAL A 346 1 19 HELIX 4 AA4 MET B 260 GLU B 267 1 8 HELIX 5 AA5 ALA B 286 GLY B 292 1 7 HELIX 6 AA6 GLY B 295 GLY B 306 1 12 HELIX 7 AA7 PRO B 328 VAL B 346 1 19 SHEET 1 AA1 3 ILE A 278 PRO A 283 0 SHEET 2 AA1 3 GLU A 320 THR A 326 -1 O ILE A 325 N ILE A 278 SHEET 3 AA1 3 ARG A 308 PHE A 311 -1 N GLN A 310 O GLN A 324 SHEET 1 AA2 3 GLY B 277 PRO B 283 0 SHEET 2 AA2 3 GLU B 320 THR B 326 -1 O ILE B 325 N ILE B 278 SHEET 3 AA2 3 ARG B 308 PHE B 311 -1 N GLN B 310 O GLN B 324 LINK OD1 ASP A 304 ZN ZN B 408 1555 4545 2.07 LINK NE2 HIS A 334 ZN ZN B 408 1555 4545 1.77 LINK OE1 GLU A 337 ZN ZN A 503 1555 1555 1.79 LINK OD2 ASP A 341 ZN ZN A 503 1555 1555 2.13 LINK ZN ZN A 503 O HOH A 608 1555 1555 2.40 LINK ZN ZN A 503 OE1 GLU B 337 4655 1555 2.55 LINK ZN ZN A 503 OE2 GLU B 337 4655 1555 2.21 LINK N SER B 259 ZN ZN B 407 1555 1555 2.29 LINK O SER B 259 ZN ZN B 407 1555 1555 2.30 LINK OD2 ASP B 304 ZN ZN B 407 1555 1555 1.84 LINK NE2 HIS B 334 ZN ZN B 407 1555 1555 1.85 LINK OD2 ASP B 341 ZN ZN B 408 1555 1555 1.99 LINK ZN ZN B 407 O HOH B 508 1555 1555 2.32 LINK ZN ZN B 408 O HOH B 519 1555 1555 2.28 SITE 1 AC1 2 HIS A 334 GLU B 337 SITE 1 AC2 5 LYS A 299 GLN A 302 ASN A 303 GLU B 276 SITE 2 AC2 5 GLY B 327 SITE 1 AC3 4 GLU A 337 ASP A 341 HOH A 608 GLU B 337 SITE 1 AC4 6 GLY A 292 ARG A 293 LYS A 300 PHE B 285 SITE 2 AC4 6 GLN B 347 HOH B 501 SITE 1 AC5 8 ARG B 284 ASP B 314 ASP B 315 GLY B 316 SITE 2 AC5 8 THR B 317 THR B 318 GLU B 320 HOH B 504 SITE 1 AC6 9 ARG A 284 PHE A 285 GLY A 288 ARG B 284 SITE 2 AC6 9 PHE B 285 ALA B 286 VAL B 287 GLY B 288 SITE 3 AC6 9 ASP B 315 SITE 1 AC7 5 ASP A 304 ALA A 305 ARG A 331 HIS A 334 SITE 2 AC7 5 ASP B 341 SITE 1 AC8 5 ARG A 293 PRO B 283 ARG B 284 PHE B 285 SITE 2 AC8 5 PRO B 319 SITE 1 AC9 4 ALA B 305 ASP B 330 ARG B 331 HIS B 334 SITE 1 AD1 4 SER B 259 ASP B 304 HIS B 334 HOH B 508 SITE 1 AD2 4 ASP A 304 HIS A 334 ASP B 341 HOH B 519 CRYST1 47.409 47.409 147.893 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021093 0.012178 0.000000 0.00000 SCALE2 0.000000 0.024356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006762 0.00000