PDB Short entry for 6Y2D HEADER RNA BINDING PROTEIN 15-FEB-20 6Y2D TITLE CRYSTAL STRUCTURE OF THE SECOND KH DOMAIN OF FUBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAR UPSTREAM ELEMENT-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FUSE-BINDING PROTEIN 1,DNA HELICASE V,HDH V; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FUBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSDNA/RNA BINDING MOTIF, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.NI,A.CHAIKUAD,A.C.JOERGER,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 2 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 24-JAN-24 6Y2D 1 REMARK REVDAT 2 19-AUG-20 6Y2D 1 JRNL REVDAT 1 25-MAR-20 6Y2D 0 JRNL AUTH X.NI,S.KNAPP,A.CHAIKUAD JRNL TITL COMPARATIVE STRUCTURAL ANALYSES AND NUCLEOTIDE-BINDING JRNL TITL 2 CHARACTERIZATION OF THE FOUR KH DOMAINS OF FUBP1. JRNL REF SCI REP V. 10 13459 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32778776 JRNL DOI 10.1038/S41598-020-69832-Z REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.985 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2124 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2152 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2851 ; 1.684 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5016 ; 1.387 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;37.937 ;24.943 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;13.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.010 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2276 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 326 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 184 256 B 184 256 1768 0.170 0.050 REMARK 3 2 A 185 257 C 185 257 1554 0.150 0.050 REMARK 3 3 A 183 256 D 183 256 1766 0.160 0.050 REMARK 3 4 B 185 256 C 185 256 1536 0.180 0.050 REMARK 3 5 B 184 256 D 184 256 1903 0.140 0.050 REMARK 3 6 C 185 256 D 185 256 1607 0.190 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0980 21.0182 44.1049 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0020 REMARK 3 T33: 0.0506 T12: 0.0071 REMARK 3 T13: 0.0213 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.2745 L22: 2.5048 REMARK 3 L33: 2.8542 L12: 0.2319 REMARK 3 L13: 0.0883 L23: -0.0938 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.0422 S13: 0.1696 REMARK 3 S21: -0.1314 S22: 0.0005 S23: 0.1641 REMARK 3 S31: -0.1803 S32: -0.0383 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 256 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3937 0.6380 49.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0147 REMARK 3 T33: 0.0420 T12: -0.0018 REMARK 3 T13: 0.0530 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 1.9797 REMARK 3 L33: 2.2489 L12: -0.2994 REMARK 3 L13: 0.4103 L23: 0.9201 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: -0.1646 S13: -0.0623 REMARK 3 S21: 0.0068 S22: -0.0127 S23: 0.1323 REMARK 3 S31: 0.0247 S32: -0.1006 S33: 0.0583 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 184 C 258 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9331 -8.6525 31.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0118 REMARK 3 T33: 0.0261 T12: -0.0155 REMARK 3 T13: 0.0379 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.9467 L22: 1.9752 REMARK 3 L33: 1.9063 L12: -0.9161 REMARK 3 L13: 0.4522 L23: -0.7101 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0701 S13: 0.0007 REMARK 3 S21: -0.0021 S22: -0.0733 S23: 0.1016 REMARK 3 S31: 0.0904 S32: -0.0453 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 183 D 256 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7683 12.4384 25.5505 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0225 REMARK 3 T33: 0.0260 T12: -0.0055 REMARK 3 T13: 0.0298 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.7496 L22: 1.3874 REMARK 3 L33: 0.9024 L12: 0.2597 REMARK 3 L13: -0.1177 L23: -0.4255 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: 0.0880 S13: 0.0177 REMARK 3 S21: -0.0638 S22: 0.0045 S23: 0.0519 REMARK 3 S31: 0.0393 S32: -0.0617 S33: 0.0400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6Y2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 5% 2-PROPANOL, REMARK 280 2.5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.09050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 223 REMARK 465 ASP A 224 REMARK 465 GLY A 225 REMARK 465 PRO A 226 REMARK 465 GLN A 227 REMARK 465 ASN A 228 REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 GLN A 258 REMARK 465 GLY A 259 REMARK 465 SER B 183 REMARK 465 PRO B 226 REMARK 465 GLN B 227 REMARK 465 ASN B 228 REMARK 465 ASP B 257 REMARK 465 GLN B 258 REMARK 465 GLY B 259 REMARK 465 SER C 183 REMARK 465 MET C 184 REMARK 465 VAL C 200 REMARK 465 ILE C 201 REMARK 465 GLY C 202 REMARK 465 LYS C 203 REMARK 465 GLY C 204 REMARK 465 GLY C 205 REMARK 465 GLY C 259 REMARK 465 ASP D 257 REMARK 465 GLN D 258 REMARK 465 GLY D 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 183 N CA CB OG REMARK 470 ASP A 257 CA C O CB CG OD1 OD2 REMARK 470 MET B 184 CG SD CE REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 196 CG CD CE NZ REMARK 470 LEU C 199 CG CD1 CD2 REMARK 470 GLU C 206 CG CD OE1 OE2 REMARK 470 LYS D 203 CG CD CE NZ REMARK 470 ARG D 256 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 249 CD GLU C 249 OE2 0.070 REMARK 500 GLU D 253 CD GLU D 253 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 195 44.39 -90.17 REMARK 500 LYS C 196 -2.96 -153.24 REMARK 500 MET D 184 49.38 -141.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 DBREF 6Y2D A 185 259 UNP Q96AE4 FUBP1_HUMAN 185 259 DBREF 6Y2D B 185 259 UNP Q96AE4 FUBP1_HUMAN 185 259 DBREF 6Y2D C 185 259 UNP Q96AE4 FUBP1_HUMAN 185 259 DBREF 6Y2D D 185 259 UNP Q96AE4 FUBP1_HUMAN 185 259 SEQADV 6Y2D SER A 183 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D MET A 184 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D SER B 183 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D MET B 184 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D SER C 183 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D MET C 184 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D SER D 183 UNP Q96AE4 EXPRESSION TAG SEQADV 6Y2D MET D 184 UNP Q96AE4 EXPRESSION TAG SEQRES 1 A 77 SER MET ASN ALA VAL GLN GLU ILE MET ILE PRO ALA SER SEQRES 2 A 77 LYS ALA GLY LEU VAL ILE GLY LYS GLY GLY GLU THR ILE SEQRES 3 A 77 LYS GLN LEU GLN GLU ARG ALA GLY VAL LYS MET VAL MET SEQRES 4 A 77 ILE GLN ASP GLY PRO GLN ASN THR GLY ALA ASP LYS PRO SEQRES 5 A 77 LEU ARG ILE THR GLY ASP PRO TYR LYS VAL GLN GLN ALA SEQRES 6 A 77 LYS GLU MET VAL LEU GLU LEU ILE ARG ASP GLN GLY SEQRES 1 B 77 SER MET ASN ALA VAL GLN GLU ILE MET ILE PRO ALA SER SEQRES 2 B 77 LYS ALA GLY LEU VAL ILE GLY LYS GLY GLY GLU THR ILE SEQRES 3 B 77 LYS GLN LEU GLN GLU ARG ALA GLY VAL LYS MET VAL MET SEQRES 4 B 77 ILE GLN ASP GLY PRO GLN ASN THR GLY ALA ASP LYS PRO SEQRES 5 B 77 LEU ARG ILE THR GLY ASP PRO TYR LYS VAL GLN GLN ALA SEQRES 6 B 77 LYS GLU MET VAL LEU GLU LEU ILE ARG ASP GLN GLY SEQRES 1 C 77 SER MET ASN ALA VAL GLN GLU ILE MET ILE PRO ALA SER SEQRES 2 C 77 LYS ALA GLY LEU VAL ILE GLY LYS GLY GLY GLU THR ILE SEQRES 3 C 77 LYS GLN LEU GLN GLU ARG ALA GLY VAL LYS MET VAL MET SEQRES 4 C 77 ILE GLN ASP GLY PRO GLN ASN THR GLY ALA ASP LYS PRO SEQRES 5 C 77 LEU ARG ILE THR GLY ASP PRO TYR LYS VAL GLN GLN ALA SEQRES 6 C 77 LYS GLU MET VAL LEU GLU LEU ILE ARG ASP GLN GLY SEQRES 1 D 77 SER MET ASN ALA VAL GLN GLU ILE MET ILE PRO ALA SER SEQRES 2 D 77 LYS ALA GLY LEU VAL ILE GLY LYS GLY GLY GLU THR ILE SEQRES 3 D 77 LYS GLN LEU GLN GLU ARG ALA GLY VAL LYS MET VAL MET SEQRES 4 D 77 ILE GLN ASP GLY PRO GLN ASN THR GLY ALA ASP LYS PRO SEQRES 5 D 77 LEU ARG ILE THR GLY ASP PRO TYR LYS VAL GLN GLN ALA SEQRES 6 D 77 LYS GLU MET VAL LEU GLU LEU ILE ARG ASP GLN GLY HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 901 5 HET GOL B 902 6 HET SO4 C 301 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 4(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *100(H2 O) HELIX 1 AA1 PRO A 193 SER A 195 5 3 HELIX 2 AA2 LYS A 196 GLY A 202 1 7 HELIX 3 AA3 GLY A 205 GLY A 216 1 12 HELIX 4 AA4 ASP A 240 ARG A 256 1 17 HELIX 5 AA5 PRO B 193 SER B 195 5 3 HELIX 6 AA6 LYS B 196 GLY B 202 1 7 HELIX 7 AA7 GLY B 205 GLY B 216 1 12 HELIX 8 AA8 ASP B 240 ARG B 256 1 17 HELIX 9 AA9 PRO C 193 ALA C 197 5 5 HELIX 10 AB1 THR C 207 GLY C 216 1 10 HELIX 11 AB2 ASP C 240 ASP C 257 1 18 HELIX 12 AB3 PRO D 193 SER D 195 5 3 HELIX 13 AB4 LYS D 196 GLY D 202 1 7 HELIX 14 AB5 GLY D 205 GLY D 216 1 12 HELIX 15 AB6 ASP D 224 ASN D 228 5 5 HELIX 16 AB7 ASP D 240 ARG D 256 1 17 SHEET 1 AA1 6 LYS A 218 MET A 221 0 SHEET 2 AA1 6 LYS A 233 GLY A 239 -1 O ARG A 236 N VAL A 220 SHEET 3 AA1 6 ALA A 186 ILE A 192 -1 N GLN A 188 O ILE A 237 SHEET 4 AA1 6 ALA D 186 ILE D 192 1 O VAL D 187 N MET A 191 SHEET 5 AA1 6 LYS D 233 GLY D 239 -1 O ILE D 237 N GLN D 188 SHEET 6 AA1 6 LYS D 218 MET D 221 -1 N VAL D 220 O ARG D 236 SHEET 1 AA2 3 ALA B 186 ILE B 192 0 SHEET 2 AA2 3 LYS B 233 GLY B 239 -1 O ILE B 237 N GLN B 188 SHEET 3 AA2 3 LYS B 218 MET B 221 -1 N VAL B 220 O ARG B 236 SHEET 1 AA3 3 ALA C 186 ILE C 192 0 SHEET 2 AA3 3 LYS C 233 GLY C 239 -1 O ILE C 237 N GLN C 188 SHEET 3 AA3 3 LYS C 218 MET C 221 -1 N VAL C 220 O ARG C 236 SITE 1 AC1 3 LYS A 203 LYS A 218 THR A 238 SITE 1 AC2 1 ARG A 214 SITE 1 AC3 2 PRO B 193 LYS B 243 SITE 1 AC4 4 LYS B 218 ARG B 236 THR B 238 LYS C 248 SITE 1 AC5 2 ARG C 214 GLY D 198 CRYST1 28.888 82.181 49.371 90.00 91.04 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034616 0.000000 0.000628 0.00000 SCALE2 0.000000 0.012168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020258 0.00000