PDB Short entry for 6YBO
HEADER    ISOMERASE                               17-MAR-20   6YBO              
TITLE     RT STRUCTURE OF GLUCOSE ISOMERASE OBTAINED AT 1.06 A RESOLUTION FROM  
TITLE    2 CRYSTAL GROWN IN A KAPTON MICROCHIP.                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: XYLOSE ISOMERASE;                                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 5.3.1.5                                                          
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS;                       
SOURCE   3 ORGANISM_TAXID: 1929                                                 
KEYWDS    D-XYLOSE KETOL ISOMERASE, ISOMERASE                                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.A.GAVIRA,S.MARTINEZ-RODRIGUEZ                                       
REVDAT   2   19-AUG-20 6YBO    1       JRNL                                     
REVDAT   1   12-AUG-20 6YBO    0                                                
JRNL        AUTH   J.A.GAVIRA,I.RODRIGUEZ-RUIZ,S.MARTINEZ-RODRIGUEZ,S.BASU,     
JRNL        AUTH 2 S.TEYCHENE,A.A.MCCARTHY,C.MUELLER-DIECKMAN                   
JRNL        TITL   ATTAINING ATOMIC RESOLUTION FROM IN SITU DATA COLLECTION AT  
JRNL        TITL 2 ROOM TEMPERATURE USING COUNTER-DIFFUSION-BASED LOW-COST      
JRNL        TITL 3 MICROCHIPS.                                                  
JRNL        REF    ACTA CRYSTALLOGR D STRUCT     V.  76   751 2020              
JRNL        REF  2 BIOL                                                         
JRNL        REFN                   ISSN 2059-7983                               
JRNL        PMID   32744257                                                     
JRNL        DOI    10.1107/S2059798320008475                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.06 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.15.2_3472                                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 41.12                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 92.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 199958                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.123                           
REMARK   3   R VALUE            (WORKING SET) : 0.123                           
REMARK   3   FREE R VALUE                     : 0.131                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 9998                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 41.1200 -  3.2900    1.00     7185   379  0.1288 0.1354        
REMARK   3     2  3.2900 -  2.6100    1.00     7007   369  0.1292 0.1353        
REMARK   3     3  2.6100 -  2.2800    1.00     6948   365  0.1216 0.1297        
REMARK   3     4  2.2800 -  2.0700    1.00     6912   364  0.1054 0.1121        
REMARK   3     5  2.0700 -  1.9300    1.00     6919   364  0.1003 0.1048        
REMARK   3     6  1.9300 -  1.8100    1.00     6875   362  0.0995 0.1106        
REMARK   3     7  1.8100 -  1.7200    1.00     6868   362  0.0978 0.1048        
REMARK   3     8  1.7200 -  1.6500    1.00     6847   360  0.0925 0.1052        
REMARK   3     9  1.6500 -  1.5800    1.00     6858   361  0.0852 0.0929        
REMARK   3    10  1.5800 -  1.5300    1.00     6864   361  0.0828 0.0916        
REMARK   3    11  1.5300 -  1.4800    1.00     6860   361  0.0830 0.0865        
REMARK   3    12  1.4800 -  1.4400    1.00     6857   361  0.0869 0.1009        
REMARK   3    13  1.4400 -  1.4000    1.00     6828   359  0.0950 0.1276        
REMARK   3    14  1.4000 -  1.3700    1.00     6851   361  0.1038 0.1133        
REMARK   3    15  1.3700 -  1.3400    1.00     6818   359  0.1089 0.1218        
REMARK   3    16  1.3400 -  1.3100    1.00     6849   360  0.1112 0.1184        
REMARK   3    17  1.3100 -  1.2800    1.00     6814   359  0.1254 0.1340        
REMARK   3    18  1.2800 -  1.2600    1.00     6778   357  0.1323 0.1427        
REMARK   3    19  1.2600 -  1.2300    1.00     6848   360  0.1425 0.1552        
REMARK   3    20  1.2300 -  1.2100    1.00     6833   360  0.1568 0.1554        
REMARK   3    21  1.2100 -  1.1900    1.00     6782   357  0.1668 0.1750        
REMARK   3    22  1.1900 -  1.1800    1.00     6796   357  0.1748 0.1856        
REMARK   3    23  1.1800 -  1.1600    0.99     6745   354  0.1918 0.1882        
REMARK   3    24  1.1600 -  1.1400    0.97     6645   350  0.2182 0.2257        
REMARK   3    25  1.1400 -  1.1300    0.90     6137   323  0.2559 0.2717        
REMARK   3    26  1.1300 -  1.1100    0.85     5775   303  0.3203 0.3500        
REMARK   3    27  1.1100 -  1.1000    0.77     5231   276  0.3338 0.3483        
REMARK   3    28  1.1000 -  1.0800    0.46     3160   166  0.3493 0.3193        
REMARK   3    29  1.0800 -  1.0700    0.40     2730   145  0.3793 0.4283        
REMARK   3    30  1.0700 -  1.0600    0.34     2340   123  0.3693 0.4002        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.091            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.003           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 13.05                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 20.18                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.005           3567                                  
REMARK   3   ANGLE     :  0.904           4900                                  
REMARK   3   CHIRALITY :  0.075            494                                  
REMARK   3   PLANARITY :  0.007            690                                  
REMARK   3   DIHEDRAL  :  7.561           2532                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6YBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-20.                  
REMARK 100 THE DEPOSITION ID IS D_1292107353.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 06-MAR-17                          
REMARK 200  TEMPERATURE           (KELVIN) : 293.5                              
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID30B                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9763                             
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : BE CRL LENSES FOR VERTICAL         
REMARK 200                                   FOCUSING AND RH/PT/SI COATED       
REMARK 200                                   ELLIPITCAL MIRROR FOR HORIZONTAL   
REMARK 200                                   FOCUSING                           
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS3 6M                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 200000                             
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.060                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 41.120                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 92.3                               
REMARK 200  DATA REDUNDANCY                : 7.930                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.4000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.09                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 40.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4A8I                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MGCL2, 10% W/V PEG 1K, 0.1 M       
REMARK 280  HEPES PH 7.0, COUNTER-DIFFUSION, TEMPERATURE 293.5K                 
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X,Y,-Z                                                 
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z+1/2                                       
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z+1/2                                     
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       46.97000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       49.68500            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       51.52000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       46.97000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       49.68500            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       51.52000            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       46.97000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       49.68500            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       51.52000            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       46.97000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       49.68500            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       51.52000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 746  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ASN A     2                                                      
REMARK 465     GLY A   388                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A   573     O    HOH A   727              1.96            
REMARK 500   O    HOH A   556     O    HOH A   734              2.01            
REMARK 500   OD1  ASP A   297     O    HOH A   501              2.09            
REMARK 500   O    HOH A   524     O    HOH A   770              2.10            
REMARK 500   O    HOH A   506     O    HOH A   754              2.12            
REMARK 500   O    HOH A   529     O    HOH A   683              2.12            
REMARK 500   O    HOH A   527     O    HOH A   770              2.13            
REMARK 500   O    HOH A   728     O    HOH A   760              2.16            
REMARK 500   O    HOH A   734     O    HOH A   736              2.17            
REMARK 500   OE2  GLU A   337     O    HOH A   502              2.17            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A   504     O    HOH A   525     3557     2.07            
REMARK 500   O    HOH A   735     O    HOH A   750     4557     2.11            
REMARK 500   O    HOH A   517     O    HOH A   761     4557     2.13            
REMARK 500   O    HOH A   674     O    HOH A   691     2555     2.18            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    THR A  17      -72.90    -83.77                                   
REMARK 500    GLU A 186      104.31     83.88                                   
REMARK 500    GLU A 186      113.65     75.69                                   
REMARK 500    ASN A 247     -167.70   -168.67                                   
REMARK 500    LYS A 253     -171.25   -170.19                                   
REMARK 500    ALA A 343       60.50   -151.13                                   
REMARK 500    PHE A 357      -69.36   -154.63                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 403  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 163   OD1                                                    
REMARK 620 2 TYR A 212   OH  110.0                                              
REMARK 620 3 HOH A 534   O   101.9  95.0                                        
REMARK 620 N                    1     2                                         
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 401  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 181   OE2                                                    
REMARK 620 2 GLU A 181   OE2  16.3                                              
REMARK 620 3 GLU A 217   OE1  91.3  88.9                                        
REMARK 620 4 ASP A 245   OD2 102.9  88.1 106.2                                  
REMARK 620 5 ASP A 287   OD2 155.7 170.5  86.0 101.0                            
REMARK 620 6 HOH A 509   O    89.0  95.5 164.8  88.5  87.5                      
REMARK 620 7 HOH A 513   O    71.5  87.8  96.2 157.2  84.8  69.6                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 402  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 217   OE2                                                    
REMARK 620 2 ASP A 255   OD1 107.1                                              
REMARK 620 3 ASP A 255   OD2 162.5  57.4                                        
REMARK 620 4 ASP A 257   OD1  89.9  82.7  95.4                                  
REMARK 620 5 HOH A 627   O   104.7 147.3  92.0  89.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 6YBF   RELATED DB: PDB                                   
REMARK 900 PDB ENTRIES FOR THE SAME CITATION                                    
REMARK 900 RELATED ID: 6YBI   RELATED DB: PDB                                   
REMARK 900 PDB ENTRIES FOR THE SAME CITATION                                    
DBREF  6YBO A    1   388  UNP    P24300   XYLA_STRRU       1    388             
SEQRES   1 A  388  MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE          
SEQRES   2 A  388  GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE          
SEQRES   3 A  388  GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER          
SEQRES   4 A  388  VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR          
SEQRES   5 A  388  PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP          
SEQRES   6 A  388  SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA          
SEQRES   7 A  388  LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR          
SEQRES   8 A  388  ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE          
SEQRES   9 A  388  THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG          
SEQRES  10 A  388  LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY          
SEQRES  11 A  388  ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA          
SEQRES  12 A  388  GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP          
SEQRES  13 A  388  ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL          
SEQRES  14 A  388  THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO          
SEQRES  15 A  388  LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR          
SEQRES  16 A  388  VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG          
SEQRES  17 A  388  PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU          
SEQRES  18 A  388  GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN          
SEQRES  19 A  388  ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN          
SEQRES  20 A  388  GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE          
SEQRES  21 A  388  GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP          
SEQRES  22 A  388  LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE          
SEQRES  23 A  388  ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL          
SEQRES  24 A  388  TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE          
SEQRES  25 A  388  LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU          
SEQRES  26 A  388  VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU          
SEQRES  27 A  388  ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU          
SEQRES  28 A  388  ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA          
SEQRES  29 A  388  ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN          
SEQRES  30 A  388  LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY                  
HET     MG  A 401       1                                                       
HET     MG  A 402       1                                                       
HET     NA  A 403       1                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
FORMUL   2   MG    2(MG 2+)                                                     
FORMUL   4   NA    NA 1+                                                        
FORMUL   5  HOH   *281(H2 O)                                                    
HELIX    1 AA1 THR A    6  ASP A    9  5                                   4    
HELIX    2 AA2 LEU A   15  GLY A   19  1                                   5    
HELIX    3 AA3 ASP A   35  GLY A   47  1                                  13    
HELIX    4 AA4 ASP A   55  ILE A   59  1                                   5    
HELIX    5 AA5 SER A   64  GLY A   83  1                                  20    
HELIX    6 AA6 HIS A   96  LYS A  100  5                                   5    
HELIX    7 AA7 ASP A  108  LEU A  129  1                                  22    
HELIX    8 AA8 SER A  145  LYS A  149  5                                   5    
HELIX    9 AA9 ASP A  150  GLY A  173  1                                  24    
HELIX   10 AB1 THR A  195  GLU A  204  1                                  10    
HELIX   11 AB2 ARG A  208  GLU A  210  5                                   3    
HELIX   12 AB3 GLU A  217  MET A  223  1                                   7    
HELIX   13 AB4 ASN A  227  ALA A  238  1                                  12    
HELIX   14 AB5 ASP A  264  GLY A  279  1                                  16    
HELIX   15 AB6 ASP A  295  ASP A  323  1                                  29    
HELIX   16 AB7 ASP A  323  SER A  333  1                                  11    
HELIX   17 AB8 ARG A  334  ALA A  339  1                                   6    
HELIX   18 AB9 GLY A  346  ASP A  353  1                                   8    
HELIX   19 AC1 ARG A  354  PHE A  357  5                                   4    
HELIX   20 AC2 ASP A  361  ARG A  368  1                                   8    
HELIX   21 AC3 ALA A  371  GLY A  385  1                                  15    
SHEET    1 AA1 8 TYR A 212  VAL A 214  0                                        
SHEET    2 AA1 8 ARG A 177  ILE A 180  1  N  ILE A 180   O  GLY A 213           
SHEET    3 AA1 8 THR A 133  ALA A 136  1  N  TYR A 134   O  ARG A 177           
SHEET    4 AA1 8 LYS A  85  THR A  90  1  N  ALA A  89   O  VAL A 135           
SHEET    5 AA1 8 GLY A  50  HIS A  54  1  N  VAL A  51   O  LYS A  85           
SHEET    6 AA1 8 PHE A  11  GLY A  14  1  N  PHE A  13   O  THR A  52           
SHEET    7 AA1 8 ARG A 284  PHE A 286  1  O  PHE A 286   N  THR A  12           
SHEET    8 AA1 8 ASP A 245  LEU A 246  1  N  LEU A 246   O  HIS A 285           
SHEET    1 AA2 2 GLY A 142  ALA A 143  0                                        
SHEET    2 AA2 2 ASP A 190  ILE A 191 -1  O  ASP A 190   N  ALA A 143           
LINK         OD1 ASP A 163                NA    NA A 403     1555   1555  2.73  
LINK         OE2AGLU A 181                MG    MG A 401     1555   1555  1.98  
LINK         OE2BGLU A 181                MG    MG A 401     1555   1555  2.00  
LINK         OH  TYR A 212                NA    NA A 403     1555   1555  2.89  
LINK         OE1 GLU A 217                MG    MG A 401     1555   1555  2.10  
LINK         OE2 GLU A 217                MG    MG A 402     1555   1555  2.04  
LINK         OD2 ASP A 245                MG    MG A 401     1555   1555  2.07  
LINK         OD1 ASP A 255                MG    MG A 402     1555   1555  2.32  
LINK         OD2 ASP A 255                MG    MG A 402     1555   1555  2.22  
LINK         OD1 ASP A 257                MG    MG A 402     1555   1555  2.18  
LINK         OD2 ASP A 287                MG    MG A 401     1555   1555  2.12  
LINK        MG    MG A 401                 O   HOH A 509     1555   1555  2.30  
LINK        MG    MG A 401                 O   HOH A 513     1555   1555  2.28  
LINK        MG    MG A 402                 O   HOH A 627     1555   1555  2.17  
LINK        NA    NA A 403                 O   HOH A 534     1555   1555  2.82  
CISPEP   1 GLU A  186    PRO A  187          0        19.64                     
CISPEP   2 GLU A  186    PRO A  187          0         7.82                     
SITE     1 AC1  6 GLU A 181  GLU A 217  ASP A 245  ASP A 287                    
SITE     2 AC1  6 HOH A 509  HOH A 513                                          
SITE     1 AC2  5 GLU A 217  HIS A 220  ASP A 255  ASP A 257                    
SITE     2 AC2  5 HOH A 627                                                     
SITE     1 AC3  5 ASP A 163  GLU A 207  ARG A 208  TYR A 212                    
SITE     2 AC3  5 HOH A 534                                                     
CRYST1   93.940   99.370  103.040  90.00  90.00  90.00 I 2 2 2       8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010645  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010063  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009705        0.00000