PDB Short entry for 6Z0H HEADER MEMBRANE PROTEIN 08-MAY-20 6Z0H TITLE STRUCTURE OF TREM2 TRANSMEMBRANE HELIX K186A VARIANT IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TREM-2,TRIGGERING RECEPTOR EXPRESSED ON MONOCYTES 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TREM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEURODEGENERATION, PROTEOLYSIS, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.STEINER,K.SCHLEPKOW,B.BRUNNER,H.STEINER,C.HAASS,F.HAGN REVDAT 3 14-JUN-23 6Z0H 1 REMARK REVDAT 2 28-OCT-20 6Z0H 1 JRNL REVDAT 1 16-SEP-20 6Z0H 0 JRNL AUTH A.STEINER,K.SCHLEPCKOW,B.BRUNNER,H.STEINER,C.HAASS,F.HAGN JRNL TITL GAMMA-SECRETASE CLEAVAGE OF THE ALZHEIMER RISK FACTOR TREM2 JRNL TITL 2 IS DETERMINED BY ITS INTRINSIC STRUCTURAL DYNAMICS. JRNL REF EMBO J. V. 39 04247 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 32830336 JRNL DOI 10.15252/EMBJ.2019104247 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108639. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM U-2H,U-13C,U-15N TREM2 REMARK 210 TRANSMEMBRANE HELIX IN DPC REMARK 210 MICELLES, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 9 HIS A 39 112.98 52.76 REMARK 500 20 LYS A 42 58.27 31.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z0G RELATED DB: PDB REMARK 900 RELATED ID: 50264 RELATED DB: BMRB DBREF 6Z0H A 1 46 UNP Q9NZC2 TREM2_HUMAN 161 206 SEQADV 6Z0H GLY A -2 UNP Q9NZC2 EXPRESSION TAG SEQADV 6Z0H SER A -1 UNP Q9NZC2 EXPRESSION TAG SEQADV 6Z0H GLY A 0 UNP Q9NZC2 EXPRESSION TAG SEQADV 6Z0H ALA A 26 UNP Q9NZC2 LYS 186 ENGINEERED MUTATION SEQRES 1 A 49 GLY SER GLY ARG SER LEU LEU GLU GLY GLU ILE PRO PHE SEQRES 2 A 49 PRO PRO THR SER ILE LEU LEU LEU LEU ALA CYS ILE PHE SEQRES 3 A 49 LEU ILE ALA ILE LEU ALA ALA SER ALA LEU TRP ALA ALA SEQRES 4 A 49 ALA TRP HIS GLY GLN LYS PRO GLY THR HIS HELIX 1 AA1 SER A 2 GLY A 6 5 5 HELIX 2 AA2 PRO A 11 TRP A 38 1 28 HELIX 3 AA3 HIS A 39 GLN A 41 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000