PDB Short entry for 7BQU
HEADER    METAL BINDING PROTEIN                   25-MAR-20   7BQU              
TITLE     CEREBLON IN COMPLEX WITH SALL4 AND (S)-THALIDOMIDE                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEIN CEREBLON;                                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: SAL-LIKE PROTEIN 4;                                        
COMPND   7 CHAIN: B;                                                            
COMPND   8 SYNONYM: ZINC FINGER PROTEIN 797,ZINC FINGER PROTEIN SALL4;          
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: CRBN, AD-006;                                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  10 ORGANISM_COMMON: HUMAN;                                              
SOURCE  11 ORGANISM_TAXID: 9606;                                                
SOURCE  12 GENE: SALL4, ZNF797;                                                 
SOURCE  13 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  14 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    ZINC FINGER, E3 UBIQUITIN LIGASE, COMPLEX, THALIDOMIDE, METAL BINDING 
KEYWDS   2 PROTEIN                                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.FURIHATA,Y.MIYAUCHI,A.ASANO,M.TANOKURA,T.MIYAKAWA                   
REVDAT   3   29-NOV-23 7BQU    1       REMARK                                   
REVDAT   2   14-OCT-20 7BQU    1       JRNL                                     
REVDAT   1   26-AUG-20 7BQU    0                                                
JRNL        AUTH   H.FURIHATA,S.YAMANAKA,T.HONDA,Y.MIYAUCHI,A.ASANO,N.SHIBATA,  
JRNL        AUTH 2 M.TANOKURA,T.SAWASAKI,T.MIYAKAWA                             
JRNL        TITL   STRUCTURAL BASES OF IMID SELECTIVITY THAT EMERGES BY         
JRNL        TITL 2 5-HYDROXYTHALIDOMIDE.                                        
JRNL        REF    NAT COMMUN                    V.  11  4578 2020              
JRNL        REFN                   ESSN 2041-1723                               
JRNL        PMID   32929090                                                     
JRNL        DOI    10.1038/S41467-020-18488-4                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX VER 1.15.1_3469                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.67                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 100.0                          
REMARK   3   NUMBER OF REFLECTIONS             : 11790                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.193                           
REMARK   3   R VALUE            (WORKING SET) : 0.191                           
REMARK   3   FREE R VALUE                     : 0.236                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.760                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 561                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 34.6740 -  3.0157    1.00     2919   144  0.1697 0.2269        
REMARK   3     2  3.0157 -  2.3938    1.00     2780   149  0.2134 0.2553        
REMARK   3     3  2.3938 -  2.0913    1.00     2748   138  0.2099 0.2385        
REMARK   3     4  2.0913 -  1.9001    1.00     2782   130  0.2203 0.2283        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.140            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.810           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 24.39                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.011           1102                                  
REMARK   3   ANGLE     :  1.375           1497                                  
REMARK   3   CHIRALITY :  0.046            163                                  
REMARK   3   PLANARITY :  0.011            182                                  
REMARK   3   DIHEDRAL  :  7.452            635                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 7BQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-20.                  
REMARK 100 THE DEPOSITION ID IS D_1300016124.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 26-MAY-19                          
REMARK 200  TEMPERATURE           (KELVIN) : 95                                 
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : PHOTON FACTORY                     
REMARK 200  BEAMLINE                       : AR-NE3A                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.000                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 2M-F               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 11808                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 43.990                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 12.90                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.94                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 12.80                              
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER VER 1.15.1_3469                                
REMARK 200 STARTING MODEL: 4TZ4, 5YJ0                                           
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 48.97                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.1 M SODIUM ACETATE (PH   
REMARK 280  5.5), 0.1 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP,      
REMARK 280  TEMPERATURE 293K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       21.99300            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       21.99300            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       35.48100            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       46.35900            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       35.48100            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       46.35900            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       21.99300            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       35.48100            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       46.35900            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       21.99300            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       35.48100            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       46.35900            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 642  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   313                                                      
REMARK 465     PRO A   314                                                      
REMARK 465     LEU A   315                                                      
REMARK 465     GLY A   316                                                      
REMARK 465     SER A   317                                                      
REMARK 465     GLY B   405                                                      
REMARK 465     PRO B   406                                                      
REMARK 465     LEU B   407                                                      
REMARK 465     GLY B   408                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   NZ   LYS A   413     O    HOH A   601              1.62            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   OE2  GLU A   336     O    HOH A   601     3656     1.73            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    ARG A 373   CZ    ARG A 373   NH1     0.098                       
REMARK 500    ARG A 373   CZ    ARG A 373   NH2     0.082                       
REMARK 500    CYS A 394   CB    CYS A 394   SG     -0.109                       
REMARK 500    SER B 409   CB    SER B 409   OG      0.083                       
REMARK 500    ARG B 418   NE    ARG B 418   CZ     -0.084                       
REMARK 500    ARG B 418   CZ    ARG B 418   NH1    -0.089                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 373   NH1 -  CZ  -  NH2 ANGL. DEV. =  18.9 DEGREES          
REMARK 500    ARG A 373   NE  -  CZ  -  NH1 ANGL. DEV. =  -9.2 DEGREES          
REMARK 500    ARG A 373   NE  -  CZ  -  NH2 ANGL. DEV. = -10.1 DEGREES          
REMARK 500    SER B 409   N   -  CA  -  CB  ANGL. DEV. = -11.9 DEGREES          
REMARK 500    ARG B 418   NE  -  CZ  -  NH1 ANGL. DEV. = -10.6 DEGREES          
REMARK 500    ARG B 418   NE  -  CZ  -  NH2 ANGL. DEV. =   4.5 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A 327      -37.75     78.82                                   
REMARK 500    PRO A 352        4.94    -69.54                                   
REMARK 500    ALA A 395       14.90     56.41                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A 373         0.09    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY                                       
REMARK 500                                                                      
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY                       
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER                 
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;                     
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;                            
REMARK 500 I=INSERTION CODE).                                                   
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        ANGLE                                           
REMARK 500    SER B 409        -13.73                                           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 502  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 323   SG                                                     
REMARK 620 2 CYS A 326   SG  118.8                                              
REMARK 620 3 CYS A 391   SG  116.8 107.7                                        
REMARK 620 4 CYS A 394   SG   98.7 115.6  97.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B 501  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS B 412   SG                                                     
REMARK 620 2 CYS B 415   SG  105.5                                              
REMARK 620 3 HIS B 428   NE2 106.8  98.1                                        
REMARK 620 4 HIS B 432   NE2 107.1 130.5 106.8                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EF2 A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501                  
DBREF  7BQU A  318   426  UNP    Q96SW2   CRBN_HUMAN     318    426             
DBREF  7BQU B  410   432  UNP    Q9UJQ4   SALL4_HUMAN    410    432             
SEQADV 7BQU GLY A  313  UNP  Q96SW2              EXPRESSION TAG                 
SEQADV 7BQU PRO A  314  UNP  Q96SW2              EXPRESSION TAG                 
SEQADV 7BQU LEU A  315  UNP  Q96SW2              EXPRESSION TAG                 
SEQADV 7BQU GLY A  316  UNP  Q96SW2              EXPRESSION TAG                 
SEQADV 7BQU SER A  317  UNP  Q96SW2              EXPRESSION TAG                 
SEQADV 7BQU SER A  366  UNP  Q96SW2    CYS   366 ENGINEERED MUTATION            
SEQADV 7BQU GLY B  405  UNP  Q9UJQ4              EXPRESSION TAG                 
SEQADV 7BQU PRO B  406  UNP  Q9UJQ4              EXPRESSION TAG                 
SEQADV 7BQU LEU B  407  UNP  Q9UJQ4              EXPRESSION TAG                 
SEQADV 7BQU GLY B  408  UNP  Q9UJQ4              EXPRESSION TAG                 
SEQADV 7BQU SER B  409  UNP  Q9UJQ4              EXPRESSION TAG                 
SEQRES   1 A  114  GLY PRO LEU GLY SER CYS THR SER LEU CYS CYS LYS GLN          
SEQRES   2 A  114  CYS GLN GLU THR GLU ILE THR THR LYS ASN GLU ILE PHE          
SEQRES   3 A  114  SER LEU SER LEU CYS GLY PRO MET ALA ALA TYR VAL ASN          
SEQRES   4 A  114  PRO HIS GLY TYR VAL HIS GLU THR LEU THR VAL TYR LYS          
SEQRES   5 A  114  ALA SER ASN LEU ASN LEU ILE GLY ARG PRO SER THR GLU          
SEQRES   6 A  114  HIS SER TRP PHE PRO GLY TYR ALA TRP THR VAL ALA GLN          
SEQRES   7 A  114  CYS LYS ILE CYS ALA SER HIS ILE GLY TRP LYS PHE THR          
SEQRES   8 A  114  ALA THR LYS LYS ASP MET SER PRO GLN LYS PHE TRP GLY          
SEQRES   9 A  114  LEU THR ARG SER ALA LEU LEU PRO THR ILE                      
SEQRES   1 B   28  GLY PRO LEU GLY SER PHE VAL CYS SER VAL CYS GLY HIS          
SEQRES   2 B   28  ARG PHE THR THR LYS GLY ASN LEU LYS VAL HIS PHE HIS          
SEQRES   3 B   28  ARG HIS                                                      
HET    EF2  A 501      19                                                       
HET     ZN  A 502       1                                                       
HET     ZN  B 501       1                                                       
HETNAM     EF2 S-THALIDOMIDE                                                    
HETNAM      ZN ZINC ION                                                         
FORMUL   3  EF2    C13 H10 N2 O4                                                
FORMUL   4   ZN    2(ZN 2+)                                                     
FORMUL   6  HOH   *48(H2 O)                                                     
HELIX    1 AA1 ASN A  335  ILE A  337  5                                   3    
HELIX    2 AA2 THR B  421  HIS B  432  1                                  12    
SHEET    1 AA1 3 GLU A 330  THR A 333  0                                        
SHEET    2 AA1 3 SER A 320  CYS A 323 -1  N  LEU A 321   O  ILE A 331           
SHEET    3 AA1 3 LEU A 422  LEU A 423 -1  O  LEU A 423   N  CYS A 322           
SHEET    1 AA2 6 MET A 346  VAL A 350  0                                        
SHEET    2 AA2 6 VAL A 356  VAL A 362 -1  O  HIS A 357   N  TYR A 349           
SHEET    3 AA2 6 LYS A 413  THR A 418 -1  O  LEU A 417   N  LEU A 360           
SHEET    4 AA2 6 HIS A 397  ALA A 404 -1  N  PHE A 402   O  PHE A 414           
SHEET    5 AA2 6 TYR A 384  CYS A 391 -1  N  THR A 387   O  LYS A 401           
SHEET    6 AA2 6 LEU A 368  SER A 375 -1  N  ASN A 369   O  GLN A 390           
SHEET    1 AA3 2 PHE B 410  VAL B 411  0                                        
SHEET    2 AA3 2 ARG B 418  PHE B 419 -1  O  PHE B 419   N  PHE B 410           
LINK         SG  CYS A 323                ZN    ZN A 502     1555   1555  2.31  
LINK         SG  CYS A 326                ZN    ZN A 502     1555   1555  2.36  
LINK         SG  CYS A 391                ZN    ZN A 502     1555   1555  2.21  
LINK         SG  CYS A 394                ZN    ZN A 502     1555   1555  2.24  
LINK         SG  CYS B 412                ZN    ZN B 501     1555   1555  2.21  
LINK         SG  CYS B 415                ZN    ZN B 501     1555   1555  2.16  
LINK         NE2 HIS B 428                ZN    ZN B 501     1555   1555  2.07  
LINK         NE2 HIS B 432                ZN    ZN B 501     1555   1555  1.88  
CISPEP   1 SER A  410    PRO A  411          0        -0.79                     
CISPEP   2 LEU A  423    PRO A  424          0         2.34                     
SITE     1 AC1 14 ASN A 351  PRO A 352  HIS A 353  GLU A 377                    
SITE     2 AC1 14 HIS A 378  SER A 379  TRP A 380  TRP A 386                    
SITE     3 AC1 14 PHE A 402  CYS B 412  SER B 413  VAL B 414                    
SITE     4 AC1 14 CYS B 415  GLY B 416                                          
SITE     1 AC2  4 CYS A 323  CYS A 326  CYS A 391  CYS A 394                    
SITE     1 AC3  4 CYS B 412  CYS B 415  HIS B 428  HIS B 432                    
CRYST1   70.962   92.718   43.986  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014092  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010785  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.022735        0.00000