PDB Short entry for 7CQM HEADER TRANSFERASE 11-AUG-20 7CQM TITLE PLSY GROWN IN LCP SOAKED WITH SELENOUREA FOR 22 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACYL-PO4 G3P ACYLTRANSFERASE,ACYL-PHOSPHATE--GLYCEROL-3- COMPND 5 PHOSPHATE ACYLTRANSFERASE,G3P ACYLTRANSFERASE,GPAT,LYSOPHOSPHATIDIC COMPND 6 ACID SYNTHASE,LPA SYNTHASE; COMPND 7 EC: 2.3.1.275; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: PLSY, AQ_676; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SELENOUREA, SE-SAD, LCP, PLSY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,D.F.LI REVDAT 2 31-AUG-22 7CQM 1 JRNL REVDAT 1 11-AUG-21 7CQM 0 JRNL AUTH Z.P.LUO,W.GU,Y.WANG,Y.TANG,D.F.LI JRNL TITL SELENOUREA FOR EXPERIMENTAL PHASING OF MEMBRANE PROTEIN JRNL TITL 2 CRYSTALS GROWN IN LIPID CUBIC PHASE JRNL REF CRYSTALS V. 12 2022 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST12070976 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 40046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2070 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 42.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 491 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.34000 REMARK 3 B22 (A**2) : -10.31000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3601 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3711 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4768 ; 1.452 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8495 ; 0.438 ; 1.784 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 5.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;29.816 ;19.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;11.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.096 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3818 ; 0.054 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 842 ; 0.045 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1603 ; 3.584 ; 4.033 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1602 ; 3.530 ; 4.031 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2002 ; 4.394 ; 7.536 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.564 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -L, -K, -H REMARK 3 TWIN FRACTION : 0.436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300016625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 18.59 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-35% (V/V) TRIETHYLENE GLYCOL, 0.1 M REMARK 280 AMMONIUM SULFATE, 0.1 M GLYCINE, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 PHE A 199 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 LEU B 198 CG CD1 CD2 REMARK 470 PHE B 199 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 200 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 58.50 -92.55 REMARK 500 PHE A 97 84.94 -69.74 REMARK 500 PHE A 98 151.06 -43.37 REMARK 500 LEU A 198 -72.94 -102.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 79M A 315 REMARK 610 79M A 319 REMARK 610 79M A 321 REMARK 610 79M A 322 REMARK 610 79M B 316 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEY B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79M B 321 DBREF 7CQM A 3 192 UNP O66905 PLSY_AQUAE 3 192 DBREF 7CQM B 3 192 UNP O66905 PLSY_AQUAE 3 192 SEQADV 7CQM MET A 0 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLY A 1 UNP O66905 EXPRESSION TAG SEQADV 7CQM SER A 2 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLY A 193 UNP O66905 EXPRESSION TAG SEQADV 7CQM THR A 194 UNP O66905 EXPRESSION TAG SEQADV 7CQM LEU A 195 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLU A 196 UNP O66905 EXPRESSION TAG SEQADV 7CQM VAL A 197 UNP O66905 EXPRESSION TAG SEQADV 7CQM LEU A 198 UNP O66905 EXPRESSION TAG SEQADV 7CQM PHE A 199 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLN A 200 UNP O66905 EXPRESSION TAG SEQADV 7CQM MET B 0 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLY B 1 UNP O66905 EXPRESSION TAG SEQADV 7CQM SER B 2 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLY B 193 UNP O66905 EXPRESSION TAG SEQADV 7CQM THR B 194 UNP O66905 EXPRESSION TAG SEQADV 7CQM LEU B 195 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLU B 196 UNP O66905 EXPRESSION TAG SEQADV 7CQM VAL B 197 UNP O66905 EXPRESSION TAG SEQADV 7CQM LEU B 198 UNP O66905 EXPRESSION TAG SEQADV 7CQM PHE B 199 UNP O66905 EXPRESSION TAG SEQADV 7CQM GLN B 200 UNP O66905 EXPRESSION TAG SEQRES 1 A 201 MET GLY SER ALA LEU PHE LEU VAL ILE PHE ALA TYR LEU SEQRES 2 A 201 LEU GLY SER ILE THR PHE GLY GLU VAL ILE ALA LYS LEU SEQRES 3 A 201 LYS GLY VAL ASP LEU ARG ASN VAL GLY SER GLY ASN VAL SEQRES 4 A 201 GLY ALA THR ASN VAL THR ARG ALA LEU GLY LYS LYS TYR SEQRES 5 A 201 GLY VAL LEU VAL PHE PHE LEU ASP PHE LEU LYS GLY PHE SEQRES 6 A 201 ILE PRO ALA LEU ILE ALA VAL LYS SER PHE GLY ILE ASP SEQRES 7 A 201 SER TRP VAL LEU THR PHE THR GLY LEU ALA SER VAL LEU SEQRES 8 A 201 GLY HIS MET TYR PRO VAL PHE PHE GLY PHE LYS GLY GLY SEQRES 9 A 201 LYS GLY VAL ALA THR ALA LEU GLY VAL VAL PHE ALA VAL SEQRES 10 A 201 SER PRO SER VAL ALA LEU PHE SER PHE LEU VAL TRP LEU SEQRES 11 A 201 GLY ILE PHE LEU TRP LYS ARG TYR VAL SER LEU ALA SER SEQRES 12 A 201 ILE THR ALA THR ILE SER ALA PHE LEU PHE LEU PHE VAL SEQRES 13 A 201 ALA GLY TYR PRO VAL ASN VAL LEU PHE MET ALA ILE VAL SEQRES 14 A 201 ILE GLY ALA LEU ILE ILE TYR ARG HIS ARG GLU ASN ILE SEQRES 15 A 201 ASN ARG LEU LEU THR GLY ARG GLU HIS ARG PHE GLY THR SEQRES 16 A 201 LEU GLU VAL LEU PHE GLN SEQRES 1 B 201 MET GLY SER ALA LEU PHE LEU VAL ILE PHE ALA TYR LEU SEQRES 2 B 201 LEU GLY SER ILE THR PHE GLY GLU VAL ILE ALA LYS LEU SEQRES 3 B 201 LYS GLY VAL ASP LEU ARG ASN VAL GLY SER GLY ASN VAL SEQRES 4 B 201 GLY ALA THR ASN VAL THR ARG ALA LEU GLY LYS LYS TYR SEQRES 5 B 201 GLY VAL LEU VAL PHE PHE LEU ASP PHE LEU LYS GLY PHE SEQRES 6 B 201 ILE PRO ALA LEU ILE ALA VAL LYS SER PHE GLY ILE ASP SEQRES 7 B 201 SER TRP VAL LEU THR PHE THR GLY LEU ALA SER VAL LEU SEQRES 8 B 201 GLY HIS MET TYR PRO VAL PHE PHE GLY PHE LYS GLY GLY SEQRES 9 B 201 LYS GLY VAL ALA THR ALA LEU GLY VAL VAL PHE ALA VAL SEQRES 10 B 201 SER PRO SER VAL ALA LEU PHE SER PHE LEU VAL TRP LEU SEQRES 11 B 201 GLY ILE PHE LEU TRP LYS ARG TYR VAL SER LEU ALA SER SEQRES 12 B 201 ILE THR ALA THR ILE SER ALA PHE LEU PHE LEU PHE VAL SEQRES 13 B 201 ALA GLY TYR PRO VAL ASN VAL LEU PHE MET ALA ILE VAL SEQRES 14 B 201 ILE GLY ALA LEU ILE ILE TYR ARG HIS ARG GLU ASN ILE SEQRES 15 B 201 ASN ARG LEU LEU THR GLY ARG GLU HIS ARG PHE GLY THR SEQRES 16 B 201 LEU GLU VAL LEU PHE GLN HET SEY A 301 4 HET SEY A 302 4 HET SEY A 303 4 HET SEY A 304 4 HET SEY A 305 4 HET SEY A 306 7 HET SEY A 307 4 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 A 313 5 HET 79M A 314 23 HET 79M A 315 19 HET 79M A 316 23 HET 79M A 317 23 HET 79M A 318 23 HET 79M A 319 12 HET 79M A 320 23 HET 79M A 321 11 HET 79M A 322 11 HET SEY A 323 4 HET 79M A 324 23 HET SEY B 301 4 HET 79M B 302 23 HET SEY B 303 4 HET SEY B 304 4 HET SEY B 305 4 HET SEY B 306 4 HET SEY B 307 7 HET SEY B 308 4 HET SO4 B 309 5 HET SO4 B 310 5 HET SO4 B 311 5 HET SO4 B 312 5 HET SO4 B 313 5 HET SO4 B 314 5 HET 79M B 315 23 HET 79M B 316 19 HET 79M B 317 23 HET 79M B 318 23 HET 79M B 319 23 HET 79M B 320 23 HET 79M B 321 23 HETNAM SEY SELENOUREA HETNAM SO4 SULFATE ION HETNAM 79M (2R)-2,3-DIHYDROXYPROPYL (7Z)-HEXADEC-7-ENOATE HETSYN 79M [(2R)-2,3-BIS(OXIDANYL)PROPYL] (Z)-HEXADEC-7-ENOATE FORMUL 3 SEY 15(C H4 N2 SE) FORMUL 10 SO4 12(O4 S 2-) FORMUL 16 79M 18(C19 H36 O4) FORMUL 48 HOH *120(H2 O) HELIX 1 AA1 GLY A 1 ILE A 16 1 16 HELIX 2 AA2 THR A 17 LYS A 26 1 10 HELIX 3 AA3 ASP A 29 VAL A 33 5 5 HELIX 4 AA4 GLY A 39 GLY A 48 1 10 HELIX 5 AA5 GLY A 48 PHE A 74 1 27 HELIX 6 AA6 SER A 78 TYR A 94 1 17 HELIX 7 AA7 GLY A 105 SER A 117 1 13 HELIX 8 AA8 SER A 117 ARG A 136 1 20 HELIX 9 AA9 TYR A 137 GLY A 157 1 21 HELIX 10 AB1 PRO A 159 HIS A 177 1 19 HELIX 11 AB2 HIS A 177 THR A 186 1 10 HELIX 12 AB3 GLY A 193 PHE A 199 1 7 HELIX 13 AB4 SER B 2 ILE B 16 1 15 HELIX 14 AB5 THR B 17 LYS B 26 1 10 HELIX 15 AB6 ASP B 29 VAL B 33 5 5 HELIX 16 AB7 GLY B 39 GLY B 48 1 10 HELIX 17 AB8 GLY B 48 PHE B 74 1 27 HELIX 18 AB9 SER B 78 TYR B 94 1 17 HELIX 19 AC1 GLY B 105 SER B 117 1 13 HELIX 20 AC2 SER B 117 ARG B 136 1 20 HELIX 21 AC3 TYR B 137 ALA B 156 1 20 HELIX 22 AC4 PRO B 159 HIS B 177 1 19 HELIX 23 AC5 HIS B 177 LEU B 185 1 9 HELIX 24 AC6 LEU B 195 GLN B 200 1 6 SITE 1 AC1 2 ARG A 136 SEY A 305 SITE 1 AC2 4 PHE A 74 SER A 78 HOH A 435 HOH A 452 SITE 1 AC3 5 THR A 17 GLU A 20 VAL A 21 PHE A 100 SITE 2 AC3 5 HOH A 403 SITE 1 AC4 4 HIS A 190 ARG A 191 PHE A 192 79M A 316 SITE 1 AC5 4 GLY A 193 THR A 194 SEY A 301 HOH A 414 SITE 1 AC6 3 ARG A 31 VAL A 33 GLY A 34 SITE 1 AC7 4 TYR A 94 PRO A 95 PHE A 97 PHE A 100 SITE 1 AC8 11 SER A 35 ASN A 37 THR A 41 ASN A 42 SITE 2 AC8 11 ARG A 45 GLY A 103 LYS A 104 HOH A 411 SITE 3 AC8 11 HOH A 423 HOH A 425 HOH A 433 SITE 1 AC9 11 ALA A 40 ASP A 59 HIS A 92 GLY A 103 SITE 2 AC9 11 GLY A 105 VAL A 106 ALA A 107 THR A 108 SITE 3 AC9 11 HOH A 407 HOH A 419 HOH A 433 SITE 1 AD1 6 LYS A 101 ARG A 176 ARG A 178 HOH A 428 SITE 2 AD1 6 HOH A 434 HOH A 447 SITE 1 AD2 4 ILE A 76 TYR A 158 PRO A 159 HOH A 404 SITE 1 AD3 7 ARG A 45 LYS A 104 ASN A 180 HIS A 190 SITE 2 AD3 7 79M A 314 79M A 316 HOH A 401 SITE 1 AD4 5 LYS A 24 GLY A 27 VAL A 28 ASP A 29 SITE 2 AD4 5 HOH A 422 SITE 1 AD5 15 THR A 41 LYS A 104 VAL A 113 TRP A 128 SITE 2 AD5 15 VAL A 138 SER A 142 ALA A 145 ALA A 149 SITE 3 AD5 15 ALA A 166 ILE A 169 HIS A 177 SO4 A 312 SITE 4 AD5 15 79M A 316 HOH A 407 HOH A 423 SITE 1 AD6 4 ILE A 167 ALA A 171 TYR A 175 79M A 320 SITE 1 AD7 8 THR A 41 THR A 44 PHE A 56 LEU A 110 SITE 2 AD7 8 PHE A 125 SEY A 304 SO4 A 312 79M A 314 SITE 1 AD8 4 PHE A 150 GLY A 170 ARG A 178 GLU A 179 SITE 1 AD9 8 PHE A 60 PHE A 64 VAL A 71 LYS A 72 SITE 2 AD9 8 PHE A 114 ALA A 115 VAL A 116 PRO A 118 SITE 1 AE1 7 SER A 117 SER A 119 PHE A 123 PHE A 152 SITE 2 AE1 7 ALA A 156 TYR A 158 TRP B 134 SITE 1 AE2 7 VAL A 160 LEU A 163 PHE A 164 ILE A 167 SITE 2 AE2 7 79M A 315 ILE B 143 ILE B 181 SITE 1 AE3 5 PRO A 118 SER A 119 LEU A 122 79M A 322 SITE 2 AE3 5 79M A 324 SITE 1 AE4 3 79M A 321 79M A 324 TYR B 11 SITE 1 AE5 6 PHE A 154 GLY A 157 TYR A 158 HOH A 402 SITE 2 AE5 6 LEU B 184 LEU B 185 SITE 1 AE6 5 SER A 119 79M A 321 79M A 322 GLY B 130 SITE 2 AE6 5 TRP B 134 SITE 1 AE7 3 PHE B 154 GLY B 157 TYR B 158 SITE 1 AE8 5 GLY A 130 ILE A 131 SER B 119 PHE B 123 SITE 2 AE8 5 79M B 320 SITE 1 AE9 3 PHE B 74 SER B 78 HOH B 445 SITE 1 AF1 3 THR B 17 VAL B 21 PHE B 100 SITE 1 AF2 5 HIS B 190 ARG B 191 PHE B 192 GLU B 196 SITE 2 AF2 5 SO4 B 313 SITE 1 AF3 2 GLY B 193 THR B 194 SITE 1 AF4 3 VAL B 33 GLY B 34 SER B 35 SITE 1 AF5 3 TYR B 94 PRO B 95 PHE B 100 SITE 1 AF6 10 SER B 35 ASN B 37 ASN B 42 ARG B 45 SITE 2 AF6 10 GLY B 103 LYS B 104 HOH B 411 HOH B 415 SITE 3 AF6 10 HOH B 430 HOH B 437 SITE 1 AF7 13 GLY B 39 ALA B 40 ASP B 59 HIS B 92 SITE 2 AF7 13 GLY B 103 LYS B 104 GLY B 105 VAL B 106 SITE 3 AF7 13 ALA B 107 THR B 108 HOH B 411 HOH B 432 SITE 4 AF7 13 HOH B 435 SITE 1 AF8 5 LYS B 101 ARG B 176 ARG B 178 HOH B 408 SITE 2 AF8 5 HOH B 422 SITE 1 AF9 3 GLY B 157 TYR B 158 PRO B 159 SITE 1 AG1 6 ARG B 45 SEY B 305 79M B 317 HOH B 402 SITE 2 AG1 6 HOH B 403 HOH B 409 SITE 1 AG2 6 LYS B 24 GLY B 27 VAL B 28 ASP B 29 SITE 2 AG2 6 HOH B 405 HOH B 429 SITE 1 AG3 15 THR B 41 PHE B 56 LYS B 104 VAL B 106 SITE 2 AG3 15 PHE B 125 TRP B 128 VAL B 138 SER B 142 SITE 3 AG3 15 ALA B 149 ALA B 166 HIS B 177 79M B 317 SITE 4 AG3 15 HOH B 402 HOH B 415 HOH B 435 SITE 1 AG4 1 TYR B 175 SITE 1 AG5 7 THR B 41 THR B 44 PHE B 56 LEU B 110 SITE 2 AG5 7 PHE B 125 SO4 B 313 79M B 315 SITE 1 AG6 4 PHE B 150 ALA B 171 GLU B 179 ASN B 182 SITE 1 AG7 6 PHE B 60 PHE B 64 VAL B 71 PHE B 114 SITE 2 AG7 6 ALA B 115 VAL B 116 SITE 1 AG8 14 ILE A 131 TRP A 134 THR A 144 SER A 148 SITE 2 AG8 14 PHE A 152 SER B 117 SER B 119 PHE B 123 SITE 3 AG8 14 THR B 144 SER B 148 PHE B 152 ALA B 156 SITE 4 AG8 14 TYR B 158 79M B 302 SITE 1 AG9 3 ILE A 143 TRP B 79 PHE B 150 CRYST1 53.877 88.990 53.982 90.00 95.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018561 0.000000 0.001686 0.00000 SCALE2 0.000000 0.011237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018601 0.00000