PDB Short entry for 7DUQ HEADER BIOSYNTHETIC PROTEIN 11-JAN-21 7DUQ TITLE CRYO-EM STRUCTURE OF THE COMPOUND 2 AND GLP-1-BOUND HUMAN GLP-1 TITLE 2 RECEPTOR-GS COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCAGON-LIKE PEPTIDE 1; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLUCAGON-LIKE PEPTIDE 1 RECEPTOR; COMPND 7 CHAIN: R; COMPND 8 SYNONYM: GLP-1R; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) SUBUNIT ALPHA COMPND 12 ISOFORMS SHORT; COMPND 13 CHAIN: A; COMPND 14 SYNONYM: ADENYLATE CYCLASE-STIMULATING G ALPHA PROTEIN; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 18 BETA-1; COMPND 19 CHAIN: B; COMPND 20 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 24 GAMMA-2; COMPND 25 CHAIN: G; COMPND 26 SYNONYM: G GAMMA-I; COMPND 27 ENGINEERED: YES; COMPND 28 MOL_ID: 6; COMPND 29 MOLECULE: NANOBODY-35; COMPND 30 CHAIN: N; COMPND 31 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: GLP1R; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: GNAS, GNAS1, GSP; SOURCE 18 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 22 ORGANISM_COMMON: RAT; SOURCE 23 ORGANISM_TAXID: 10116; SOURCE 24 GENE: GNB1; SOURCE 25 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 29 ORGANISM_COMMON: BOVINE; SOURCE 30 ORGANISM_TAXID: 9913; SOURCE 31 GENE: GNG2; SOURCE 32 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 34 MOL_ID: 6; SOURCE 35 SYNTHETIC: YES; SOURCE 36 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 37 ORGANISM_TAXID: 32630 KEYWDS GLUCAGON-LIKE PEPTIDE-1 RECEPTOR, GLUCAGON-LIKE PEPTIDE-1, AGO- KEYWDS 2 ALLOSTERIC MODULATOR, TYPE 2 DIABETES, COMPOUND 2, CLASS B GPCR, KEYWDS 3 BIOSYNTHETIC PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Z.CONG,L.CHEN,H.MA,Q.ZHOU,X.ZOU,C.YE,A.DAI,Q.LIU,W.HUANG,X.SUN, AUTHOR 2 X.WANG,P.XU,L.ZHAO,T.XIA,W.ZHONG,D.YANG,H.E.XU,Y.ZHANG,M.WANG REVDAT 1 14-JUL-21 7DUQ 0 JRNL AUTH Z.CONG,L.N.CHEN,H.MA,Q.ZHOU,X.ZOU,C.YE,A.DAI,Q.LIU,W.HUANG, JRNL AUTH 2 X.SUN,X.WANG,P.XU,L.ZHAO,T.XIA,W.ZHONG,D.YANG,H.ERIC XU, JRNL AUTH 3 Y.ZHANG,M.W.WANG JRNL TITL MOLECULAR INSIGHTS INTO AGO-ALLOSTERIC MODULATION OF THE JRNL TITL 2 HUMAN GLUCAGON-LIKE PEPTIDE-1 RECEPTOR. JRNL REF NAT COMMUN V. 12 3763 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34145245 JRNL DOI 10.1038/S41467-021-24058-Z REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 614978 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7DUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020187. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF THE REMARK 245 COMPOUND 2 AND GLP-1-BOUND REMARK 245 HUMAN GLP-1 RECEPTOR-GS COMPLEX; REMARK 245 GUANINE NUCLEOTIDE-BINDING REMARK 245 PROTEIN; NANOBODY-35; GLUCAGON- REMARK 245 LIKE PEPTIDE 1 RECEPTOR; REMARK 245 GLUCAGON-LIKE PEPTIDE 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, R, A, B, G, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG R 24 REMARK 465 PRO R 25 REMARK 465 GLN R 26 REMARK 465 GLY R 27 REMARK 465 ALA R 28 REMARK 465 LYS R 130 REMARK 465 ARG R 131 REMARK 465 GLY R 132 REMARK 465 GLU R 133 REMARK 465 ARG R 134 REMARK 465 SER R 135 REMARK 465 LEU R 339 REMARK 465 MET R 340 REMARK 465 CYS R 341 REMARK 465 LYS R 342 REMARK 465 THR R 343 REMARK 465 HIS R 424 REMARK 465 LEU R 425 REMARK 465 HIS R 426 REMARK 465 ILE R 427 REMARK 465 GLN R 428 REMARK 465 ARG R 429 REMARK 465 ASP R 430 REMARK 465 SER R 431 REMARK 465 SER R 432 REMARK 465 MET R 433 REMARK 465 LYS R 434 REMARK 465 PRO R 435 REMARK 465 LEU R 436 REMARK 465 LYS R 437 REMARK 465 CYS R 438 REMARK 465 PRO R 439 REMARK 465 THR R 440 REMARK 465 SER R 441 REMARK 465 SER R 442 REMARK 465 LEU R 443 REMARK 465 SER R 444 REMARK 465 SER R 445 REMARK 465 GLY R 446 REMARK 465 ALA R 447 REMARK 465 THR R 448 REMARK 465 ALA R 449 REMARK 465 GLY R 450 REMARK 465 SER R 451 REMARK 465 SER R 452 REMARK 465 MET R 453 REMARK 465 TYR R 454 REMARK 465 THR R 455 REMARK 465 ALA R 456 REMARK 465 THR R 457 REMARK 465 CYS R 458 REMARK 465 GLN R 459 REMARK 465 ALA R 460 REMARK 465 SER R 461 REMARK 465 CYS R 462 REMARK 465 SER R 463 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 HIS A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 PHE A 68 REMARK 465 ASN A 69 REMARK 465 GLY A 70 REMARK 465 GLU A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 ASP A 76 REMARK 465 PRO A 77 REMARK 465 GLN A 78 REMARK 465 ALA A 79 REMARK 465 ALA A 80 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 465 ASN A 83 REMARK 465 SER A 84 REMARK 465 ASP A 85 REMARK 465 GLY A 86 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 THR A 90 REMARK 465 LYS A 91 REMARK 465 VAL A 92 REMARK 465 GLN A 93 REMARK 465 ASP A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 ASN A 97 REMARK 465 ASN A 98 REMARK 465 LEU A 99 REMARK 465 LYS A 100 REMARK 465 GLU A 101 REMARK 465 ALA A 102 REMARK 465 ILE A 103 REMARK 465 GLU A 104 REMARK 465 THR A 105 REMARK 465 ILE A 106 REMARK 465 VAL A 107 REMARK 465 ALA A 108 REMARK 465 ALA A 109 REMARK 465 MET A 110 REMARK 465 SER A 111 REMARK 465 ASN A 112 REMARK 465 LEU A 113 REMARK 465 VAL A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 VAL A 117 REMARK 465 GLU A 118 REMARK 465 LEU A 119 REMARK 465 ALA A 120 REMARK 465 ASN A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 ASN A 124 REMARK 465 GLN A 125 REMARK 465 PHE A 126 REMARK 465 ARG A 127 REMARK 465 VAL A 128 REMARK 465 ASP A 129 REMARK 465 TYR A 130 REMARK 465 ILE A 131 REMARK 465 LEU A 132 REMARK 465 SER A 133 REMARK 465 VAL A 134 REMARK 465 MET A 135 REMARK 465 ASN A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 ASP A 139 REMARK 465 PHE A 140 REMARK 465 ASP A 141 REMARK 465 PHE A 142 REMARK 465 PRO A 143 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 PHE A 146 REMARK 465 TYR A 147 REMARK 465 GLU A 148 REMARK 465 HIS A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 ALA A 152 REMARK 465 LEU A 153 REMARK 465 TRP A 154 REMARK 465 GLU A 155 REMARK 465 ASP A 156 REMARK 465 GLU A 157 REMARK 465 GLY A 158 REMARK 465 VAL A 159 REMARK 465 ARG A 160 REMARK 465 ALA A 161 REMARK 465 CYS A 162 REMARK 465 TYR A 163 REMARK 465 GLU A 164 REMARK 465 ARG A 165 REMARK 465 SER A 166 REMARK 465 ASN A 167 REMARK 465 GLU A 168 REMARK 465 TYR A 169 REMARK 465 GLN A 170 REMARK 465 LEU A 171 REMARK 465 ILE A 172 REMARK 465 ASP A 173 REMARK 465 CYS A 174 REMARK 465 ALA A 175 REMARK 465 GLN A 176 REMARK 465 TYR A 177 REMARK 465 PHE A 178 REMARK 465 LEU A 179 REMARK 465 ASP A 180 REMARK 465 LYS A 181 REMARK 465 ILE A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 ILE A 185 REMARK 465 LYS A 186 REMARK 465 GLN A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 TYR A 190 REMARK 465 VAL A 191 REMARK 465 PRO A 192 REMARK 465 SER A 193 REMARK 465 ASP A 194 REMARK 465 GLN A 195 REMARK 465 ASP A 196 REMARK 465 LEU A 197 REMARK 465 LEU A 198 REMARK 465 ARG A 199 REMARK 465 CYS A 200 REMARK 465 MET A 255 REMARK 465 VAL A 256 REMARK 465 ILE A 257 REMARK 465 ARG A 258 REMARK 465 GLU A 259 REMARK 465 ASP A 260 REMARK 465 ASN A 261 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LEU B -1 REMARK 465 LEU B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASN G 4 REMARK 465 ASN G 5 REMARK 465 THR G 6 REMARK 465 GLU G 63 REMARK 465 LYS G 64 REMARK 465 LYS G 65 REMARK 465 PHE G 66 REMARK 465 PHE G 67 REMARK 465 CYS G 68 REMARK 465 ALA G 69 REMARK 465 ILE G 70 REMARK 465 LEU G 71 REMARK 465 MET N -1 REMARK 465 ALA N 0 REMARK 465 SER N 127 REMARK 465 SER N 128 REMARK 465 HIS N 129 REMARK 465 HIS N 130 REMARK 465 HIS N 131 REMARK 465 HIS N 132 REMARK 465 HIS N 133 REMARK 465 HIS N 134 REMARK 465 GLU N 135 REMARK 465 PRO N 136 REMARK 465 GLU N 137 REMARK 465 ALA N 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU P 9 OH TYR R 152 2.13 REMARK 500 OG1 THR B 274 O VAL B 315 2.14 REMARK 500 OH TYR A 318 OD2 ASP A 343 2.16 REMARK 500 OH TYR A 253 O LYS A 307 2.18 REMARK 500 O ARG N 98 OH TYR N 115 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS N 99 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS R 403 -55.64 -121.29 REMARK 500 LYS A 216 26.64 49.91 REMARK 500 PHE A 238 61.16 -104.44 REMARK 500 SER A 352 18.28 -140.82 REMARK 500 ARG B 68 -40.06 -130.13 REMARK 500 ASP B 153 -164.27 -162.05 REMARK 500 PHE B 292 -0.61 80.66 REMARK 500 SER N 52 -169.24 -77.20 REMARK 500 PHE N 108 150.47 -46.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 291 ASN A 292 -146.72 REMARK 500 CYS N 99 PRO N 100 -146.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30866 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE COMPOUND 2 AND GLP-1-BOUND HUMAN GLP-1 REMARK 900 RECEPTOR-GS COMPLEX DBREF 7DUQ P 7 36 UNP P01275 GLUC_HUMAN 98 127 DBREF 7DUQ R 24 463 UNP P43220 GLP1R_HUMAN 24 463 DBREF 7DUQ A 1 394 UNP P63092 GNAS2_HUMAN 1 394 DBREF 7DUQ B 2 340 UNP P54311 GBB1_RAT 2 340 DBREF 7DUQ G 2 71 UNP P63212 GBG2_BOVIN 2 71 DBREF 7DUQ N -1 138 PDB 7DUQ 7DUQ -1 138 SEQADV 7DUQ ASN A 54 UNP P63092 SER 54 ENGINEERED MUTATION SEQADV 7DUQ ALA A 226 UNP P63092 GLY 226 ENGINEERED MUTATION SEQADV 7DUQ ALA A 268 UNP P63092 GLU 268 ENGINEERED MUTATION SEQADV 7DUQ LYS A 271 UNP P63092 ASN 271 ENGINEERED MUTATION SEQADV 7DUQ ASP A 274 UNP P63092 LYS 274 ENGINEERED MUTATION SEQADV 7DUQ LYS A 280 UNP P63092 ARG 280 ENGINEERED MUTATION SEQADV 7DUQ ASP A 284 UNP P63092 THR 284 ENGINEERED MUTATION SEQADV 7DUQ THR A 285 UNP P63092 ILE 285 ENGINEERED MUTATION SEQADV 7DUQ MET B -4 UNP P54311 INITIATING METHIONINE SEQADV 7DUQ GLY B -3 UNP P54311 EXPRESSION TAG SEQADV 7DUQ SER B -2 UNP P54311 EXPRESSION TAG SEQADV 7DUQ LEU B -1 UNP P54311 EXPRESSION TAG SEQADV 7DUQ LEU B 0 UNP P54311 EXPRESSION TAG SEQADV 7DUQ GLN B 1 UNP P54311 EXPRESSION TAG SEQRES 1 P 30 HIS ALA GLU GLY THR PHE THR SER ASP VAL SER SER TYR SEQRES 2 P 30 LEU GLU GLY GLN ALA ALA LYS GLU PHE ILE ALA TRP LEU SEQRES 3 P 30 VAL LYS GLY ARG SEQRES 1 R 440 ARG PRO GLN GLY ALA THR VAL SER LEU TRP GLU THR VAL SEQRES 2 R 440 GLN LYS TRP ARG GLU TYR ARG ARG GLN CYS GLN ARG SER SEQRES 3 R 440 LEU THR GLU ASP PRO PRO PRO ALA THR ASP LEU PHE CYS SEQRES 4 R 440 ASN ARG THR PHE ASP GLU TYR ALA CYS TRP PRO ASP GLY SEQRES 5 R 440 GLU PRO GLY SER PHE VAL ASN VAL SER CYS PRO TRP TYR SEQRES 6 R 440 LEU PRO TRP ALA SER SER VAL PRO GLN GLY HIS VAL TYR SEQRES 7 R 440 ARG PHE CYS THR ALA GLU GLY LEU TRP LEU GLN LYS ASP SEQRES 8 R 440 ASN SER SER LEU PRO TRP ARG ASP LEU SER GLU CYS GLU SEQRES 9 R 440 GLU SER LYS ARG GLY GLU ARG SER SER PRO GLU GLU GLN SEQRES 10 R 440 LEU LEU PHE LEU TYR ILE ILE TYR THR VAL GLY TYR ALA SEQRES 11 R 440 LEU SER PHE SER ALA LEU VAL ILE ALA SER ALA ILE LEU SEQRES 12 R 440 LEU GLY PHE ARG HIS LEU HIS CYS THR ARG ASN TYR ILE SEQRES 13 R 440 HIS LEU ASN LEU PHE ALA SER PHE ILE LEU ARG ALA LEU SEQRES 14 R 440 SER VAL PHE ILE LYS ASP ALA ALA LEU LYS TRP MET TYR SEQRES 15 R 440 SER THR ALA ALA GLN GLN HIS GLN TRP ASP GLY LEU LEU SEQRES 16 R 440 SER TYR GLN ASP SER LEU SER CYS ARG LEU VAL PHE LEU SEQRES 17 R 440 LEU MET GLN TYR CYS VAL ALA ALA ASN TYR TYR TRP LEU SEQRES 18 R 440 LEU VAL GLU GLY VAL TYR LEU TYR THR LEU LEU ALA PHE SEQRES 19 R 440 SER VAL LEU SER GLU GLN TRP ILE PHE ARG LEU TYR VAL SEQRES 20 R 440 SER ILE GLY TRP GLY VAL PRO LEU LEU PHE VAL VAL PRO SEQRES 21 R 440 TRP GLY ILE VAL LYS TYR LEU TYR GLU ASP GLU GLY CYS SEQRES 22 R 440 TRP THR ARG ASN SER ASN MET ASN TYR TRP LEU ILE ILE SEQRES 23 R 440 ARG LEU PRO ILE LEU PHE ALA ILE GLY VAL ASN PHE LEU SEQRES 24 R 440 ILE PHE VAL ARG VAL ILE CYS ILE VAL VAL SER LYS LEU SEQRES 25 R 440 LYS ALA ASN LEU MET CYS LYS THR ASP ILE LYS CYS ARG SEQRES 26 R 440 LEU ALA LYS SER THR LEU THR LEU ILE PRO LEU LEU GLY SEQRES 27 R 440 THR HIS GLU VAL ILE PHE ALA PHE VAL MET ASP GLU HIS SEQRES 28 R 440 ALA ARG GLY THR LEU ARG PHE ILE LYS LEU PHE THR GLU SEQRES 29 R 440 LEU SER PHE THR SER PHE GLN GLY LEU MET VAL ALA ILE SEQRES 30 R 440 LEU TYR CYS PHE VAL ASN ASN GLU VAL GLN LEU GLU PHE SEQRES 31 R 440 ARG LYS SER TRP GLU ARG TRP ARG LEU GLU HIS LEU HIS SEQRES 32 R 440 ILE GLN ARG ASP SER SER MET LYS PRO LEU LYS CYS PRO SEQRES 33 R 440 THR SER SER LEU SER SER GLY ALA THR ALA GLY SER SER SEQRES 34 R 440 MET TYR THR ALA THR CYS GLN ALA SER CYS SER SEQRES 1 A 394 MET GLY CYS LEU GLY ASN SER LYS THR GLU ASP GLN ARG SEQRES 2 A 394 ASN GLU GLU LYS ALA GLN ARG GLU ALA ASN LYS LYS ILE SEQRES 3 A 394 GLU LYS GLN LEU GLN LYS ASP LYS GLN VAL TYR ARG ALA SEQRES 4 A 394 THR HIS ARG LEU LEU LEU LEU GLY ALA GLY GLU SER GLY SEQRES 5 A 394 LYS ASN THR ILE VAL LYS GLN MET ARG ILE LEU HIS VAL SEQRES 6 A 394 ASN GLY PHE ASN GLY GLU GLY GLY GLU GLU ASP PRO GLN SEQRES 7 A 394 ALA ALA ARG SER ASN SER ASP GLY GLU LYS ALA THR LYS SEQRES 8 A 394 VAL GLN ASP ILE LYS ASN ASN LEU LYS GLU ALA ILE GLU SEQRES 9 A 394 THR ILE VAL ALA ALA MET SER ASN LEU VAL PRO PRO VAL SEQRES 10 A 394 GLU LEU ALA ASN PRO GLU ASN GLN PHE ARG VAL ASP TYR SEQRES 11 A 394 ILE LEU SER VAL MET ASN VAL PRO ASP PHE ASP PHE PRO SEQRES 12 A 394 PRO GLU PHE TYR GLU HIS ALA LYS ALA LEU TRP GLU ASP SEQRES 13 A 394 GLU GLY VAL ARG ALA CYS TYR GLU ARG SER ASN GLU TYR SEQRES 14 A 394 GLN LEU ILE ASP CYS ALA GLN TYR PHE LEU ASP LYS ILE SEQRES 15 A 394 ASP VAL ILE LYS GLN ALA ASP TYR VAL PRO SER ASP GLN SEQRES 16 A 394 ASP LEU LEU ARG CYS ARG VAL LEU THR SER GLY ILE PHE SEQRES 17 A 394 GLU THR LYS PHE GLN VAL ASP LYS VAL ASN PHE HIS MET SEQRES 18 A 394 PHE ASP VAL GLY ALA GLN ARG ASP GLU ARG ARG LYS TRP SEQRES 19 A 394 ILE GLN CYS PHE ASN ASP VAL THR ALA ILE ILE PHE VAL SEQRES 20 A 394 VAL ALA SER SER SER TYR ASN MET VAL ILE ARG GLU ASP SEQRES 21 A 394 ASN GLN THR ASN ARG LEU GLN ALA ALA LEU LYS LEU PHE SEQRES 22 A 394 ASP SER ILE TRP ASN ASN LYS TRP LEU ARG ASP THR SER SEQRES 23 A 394 VAL ILE LEU PHE LEU ASN LYS GLN ASP LEU LEU ALA GLU SEQRES 24 A 394 LYS VAL LEU ALA GLY LYS SER LYS ILE GLU ASP TYR PHE SEQRES 25 A 394 PRO GLU PHE ALA ARG TYR THR THR PRO GLU ASP ALA THR SEQRES 26 A 394 PRO GLU PRO GLY GLU ASP PRO ARG VAL THR ARG ALA LYS SEQRES 27 A 394 TYR PHE ILE ARG ASP GLU PHE LEU ARG ILE SER THR ALA SEQRES 28 A 394 SER GLY ASP GLY ARG HIS TYR CYS TYR PRO HIS PHE THR SEQRES 29 A 394 CYS ALA VAL ASP THR GLU ASN ILE ARG ARG VAL PHE ASN SEQRES 30 A 394 ASP CYS ARG ASP ILE ILE GLN ARG MET HIS LEU ARG GLN SEQRES 31 A 394 TYR GLU LEU LEU SEQRES 1 B 345 MET GLY SER LEU LEU GLN SER GLU LEU ASP GLN LEU ARG SEQRES 2 B 345 GLN GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA SEQRES 3 B 345 ARG LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR SEQRES 4 B 345 ASN ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR SEQRES 5 B 345 ARG ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA SEQRES 6 B 345 MET HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SEQRES 7 B 345 SER GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR SEQRES 8 B 345 THR ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP SEQRES 9 B 345 VAL MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL SEQRES 10 B 345 ALA CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN SEQRES 11 B 345 LEU LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU SEQRES 12 B 345 LEU ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE SEQRES 13 B 345 LEU ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR SEQRES 14 B 345 THR CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR SEQRES 15 B 345 THR THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SEQRES 16 B 345 SER LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA SEQRES 17 B 345 CYS ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY SEQRES 18 B 345 MET CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE SEQRES 19 B 345 ASN ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA SEQRES 20 B 345 THR GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU SEQRES 21 B 345 ARG ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN SEQRES 22 B 345 ILE ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER SEQRES 23 B 345 GLY ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS SEQRES 24 B 345 ASN VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL SEQRES 25 B 345 LEU ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL SEQRES 26 B 345 THR ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SEQRES 27 B 345 SER PHE LEU LYS ILE TRP ASN SEQRES 1 G 70 ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG LYS SEQRES 2 G 70 LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP ARG SEQRES 3 G 70 ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA TYR SEQRES 4 G 70 CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR PRO SEQRES 5 G 70 VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS PHE SEQRES 6 G 70 PHE CYS ALA ILE LEU SEQRES 1 N 140 MET ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU SEQRES 2 N 140 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 N 140 SER GLY PHE THR PHE SER ASN TYR LYS MET ASN TRP VAL SEQRES 4 N 140 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ASP SEQRES 5 N 140 ILE SER GLN SER GLY ALA SER ILE SER TYR THR GLY SER SEQRES 6 N 140 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 N 140 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 N 140 ASP THR ALA VAL TYR TYR CYS ALA ARG CYS PRO ALA PRO SEQRES 9 N 140 PHE THR ARG ASP CYS PHE ASP VAL THR SER THR THR TYR SEQRES 10 N 140 ALA TYR ARG GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 11 N 140 HIS HIS HIS HIS HIS HIS GLU PRO GLU ALA HET HNO R 501 17 HET CLR R 502 28 HET CLR R 503 28 HET CLR R 504 28 HET CLR R 505 28 HET CLR R 506 28 HET CLR R 507 28 HET CLR R 508 29 HETNAM HNO N-TERT-BUTYL-6,7-BIS(CHLORANYL)QUINOXALIN-2-AMINE HETNAM CLR CHOLESTEROL FORMUL 7 HNO C12 H13 CL2 N3 FORMUL 8 CLR 7(C27 H46 O) HELIX 1 AA1 HIS P 7 GLY P 35 1 29 HELIX 2 AA2 SER R 31 ASP R 53 1 23 HELIX 3 AA3 PRO R 137 PHE R 169 1 33 HELIX 4 AA4 ARG R 170 HIS R 173 5 4 HELIX 5 AA5 CYS R 174 TYR R 205 1 32 HELIX 6 AA6 SER R 206 ASP R 215 1 10 HELIX 7 AA7 SER R 223 ALA R 256 1 34 HELIX 8 AA8 SER R 261 GLY R 275 1 15 HELIX 9 AA9 PRO R 277 GLU R 292 1 16 HELIX 10 AB1 ASN R 302 ASN R 338 1 37 HELIX 11 AB2 ILE R 345 GLY R 361 1 17 HELIX 12 AB3 THR R 362 ILE R 366 5 5 HELIX 13 AB4 ARG R 376 PHE R 393 1 18 HELIX 14 AB5 PHE R 393 CYS R 403 1 11 HELIX 15 AB6 ASN R 406 LEU R 422 1 17 HELIX 16 AB7 GLN A 12 ALA A 39 1 28 HELIX 17 AB8 GLY A 49 SER A 51 5 3 HELIX 18 AB9 GLY A 52 LEU A 63 1 12 HELIX 19 AC1 ASN A 264 ASN A 279 1 16 HELIX 20 AC2 LYS A 293 ALA A 303 1 11 HELIX 21 AC3 LYS A 307 PHE A 312 1 6 HELIX 22 AC4 PRO A 313 TYR A 318 5 6 HELIX 23 AC5 ASP A 331 ALA A 351 1 21 HELIX 24 AC6 GLU A 370 TYR A 391 1 22 HELIX 25 AC7 LEU B 4 ALA B 24 1 21 HELIX 26 AC8 THR B 29 THR B 34 1 6 HELIX 27 AC9 ASN B 35 ILE B 37 5 3 HELIX 28 AD1 ILE G 9 ASN G 24 1 16 HELIX 29 AD2 LYS G 29 HIS G 44 1 16 HELIX 30 AD3 THR N 28 TYR N 32 5 5 HELIX 31 AD4 GLY N 62 LYS N 65 5 4 HELIX 32 AD5 LYS N 87 THR N 91 5 5 SHEET 1 AA1 2 THR R 65 PHE R 66 0 SHEET 2 AA1 2 CYS R 71 TRP R 72 -1 O TRP R 72 N THR R 65 SHEET 1 AA2 3 PHE R 80 SER R 84 0 SHEET 2 AA2 3 HIS R 99 PHE R 103 -1 O VAL R 100 N VAL R 83 SHEET 3 AA2 3 ARG R 121 ASP R 122 -1 O ASP R 122 N TYR R 101 SHEET 1 AA3 6 PHE A 208 VAL A 214 0 SHEET 2 AA3 6 VAL A 217 ASP A 223 -1 O MET A 221 N THR A 210 SHEET 3 AA3 6 THR A 40 GLY A 47 1 N HIS A 41 O HIS A 220 SHEET 4 AA3 6 ALA A 243 VAL A 248 1 O ILE A 245 N LEU A 44 SHEET 5 AA3 6 SER A 286 LEU A 291 1 O PHE A 290 N VAL A 248 SHEET 6 AA3 6 CYS A 359 PHE A 363 1 O HIS A 362 N LEU A 291 SHEET 1 AA4 4 ARG B 46 LEU B 51 0 SHEET 2 AA4 4 LEU B 336 ASN B 340 -1 O ILE B 338 N ARG B 49 SHEET 3 AA4 4 VAL B 327 SER B 331 -1 N THR B 329 O LYS B 337 SHEET 4 AA4 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328 SHEET 1 AA5 4 ILE B 58 TRP B 63 0 SHEET 2 AA5 4 LEU B 69 SER B 74 -1 O VAL B 71 N HIS B 62 SHEET 3 AA5 4 LYS B 78 ASP B 83 -1 O ILE B 80 N SER B 72 SHEET 4 AA5 4 ASN B 88 PRO B 94 -1 O ASN B 88 N ASP B 83 SHEET 1 AA6 4 VAL B 100 TYR B 105 0 SHEET 2 AA6 4 TYR B 111 GLY B 116 -1 O ALA B 113 N ALA B 104 SHEET 3 AA6 4 ILE B 120 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA6 4 ARG B 134 ALA B 140 -1 O LEU B 139 N CYS B 121 SHEET 1 AA7 4 LEU B 146 PHE B 151 0 SHEET 2 AA7 4 GLN B 156 SER B 161 -1 O SER B 160 N CYS B 148 SHEET 3 AA7 4 CYS B 166 ASP B 170 -1 O TRP B 169 N ILE B 157 SHEET 4 AA7 4 GLN B 176 PHE B 180 -1 O PHE B 180 N CYS B 166 SHEET 1 AA8 4 VAL B 187 LEU B 192 0 SHEET 2 AA8 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188 SHEET 3 AA8 4 ALA B 208 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA8 4 MET B 217 PHE B 222 -1 O PHE B 222 N ALA B 208 SHEET 1 AA9 4 ILE B 229 PHE B 234 0 SHEET 2 AA9 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233 SHEET 3 AA9 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA9 4 GLN B 259 TYR B 264 -1 O LEU B 261 N LEU B 252 SHEET 1 AB1 4 ILE B 273 PHE B 278 0 SHEET 2 AB1 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277 SHEET 3 AB1 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AB1 4 ASP B 303 LEU B 308 -1 O ASP B 303 N ASP B 298 SHEET 1 AB2 4 GLN N 3 SER N 7 0 SHEET 2 AB2 4 LEU N 18 SER N 25 -1 O ALA N 23 N GLN N 5 SHEET 3 AB2 4 THR N 78 MET N 83 -1 O MET N 83 N LEU N 18 SHEET 4 AB2 4 PHE N 68 ASP N 73 -1 N THR N 69 O GLN N 82 SHEET 1 AB3 6 GLY N 10 LEU N 11 0 SHEET 2 AB3 6 THR N 122 THR N 125 1 O GLN N 123 N GLY N 10 SHEET 3 AB3 6 ALA N 92 ARG N 98 -1 N TYR N 94 O THR N 122 SHEET 4 AB3 6 MET N 34 GLN N 39 -1 N ASN N 35 O ALA N 97 SHEET 5 AB3 6 LEU N 45 ILE N 51 -1 O GLU N 46 N ARG N 38 SHEET 6 AB3 6 ILE N 58 TYR N 60 -1 O SER N 59 N ASP N 50 SSBOND 1 CYS R 46 CYS R 71 1555 1555 2.03 SSBOND 2 CYS R 62 CYS R 104 1555 1555 2.03 SSBOND 3 CYS R 85 CYS R 126 1555 1555 2.04 SSBOND 4 CYS R 226 CYS R 296 1555 1555 2.03 SSBOND 5 CYS N 22 CYS N 96 1555 1555 2.03 SSBOND 6 CYS N 99 CYS N 107 1555 1555 2.03 LINK SG CYS R 347 C12 HNO R 501 1555 1555 1.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000