PDB Short entry for 7M55 HEADER ANTIVIRAL PROTEIN, IMMUNE SYSTEM 22-MAR-21 7M55 TITLE B6 FAB FRAGMENT BOUND TO THE MERS-COV SPIKE STEM HELIX PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN STEM HELIX PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1230-1244 OF THE SPIKE GLYCOPROTEIN; COMPND 5 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: B6 ANTIGEN BINDING FRAGMENT (FAB) HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: B6 ANTIGEN BINDING FRAGMENT (FAB) LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 4 CORONAVIRUS; SOURCE 5 ORGANISM_COMMON: MERS-COV; SOURCE 6 ORGANISM_TAXID: 1335626; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS BROADLY NEUTRALIZING ANTIBODY, STRUCTURAL GENOMICS, SSGCID, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, ANTIVIRAL KEYWDS 3 PROTEIN, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 4 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.M.SAUER,Y.J.PARK,D.VEESLER,SEATTLE STRUCTURAL GENOMICS CENTER FOR AUTHOR 2 INFECTIOUS DISEASE (SSGCID) REVDAT 3 18-OCT-23 7M55 1 REMARK REVDAT 2 23-JUN-21 7M55 1 AUTHOR JRNL REVDAT 1 26-MAY-21 7M55 0 JRNL AUTH M.M.SAUER,M.A.TORTORICI,Y.J.PARK,A.C.WALLS,L.HOMAD, JRNL AUTH 2 O.J.ACTON,J.E.BOWEN,C.WANG,X.XIONG,W.DE VAN DER SCHUEREN, JRNL AUTH 3 J.QUISPE,B.G.HOFFSTROM,B.J.BOSCH,A.T.MCGUIRE,D.VEESLER JRNL TITL STRUCTURAL BASIS FOR BROAD CORONAVIRUS NEUTRALIZATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 28 478 2021 JRNL REFN ESSN 1545-9985 JRNL PMID 33981021 JRNL DOI 10.1038/S41594-021-00596-4 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 86866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4900 - 4.3500 0.99 2835 150 0.1480 0.1707 REMARK 3 2 4.3500 - 3.4500 0.99 2784 132 0.1323 0.1607 REMARK 3 3 3.4500 - 3.0200 0.99 2787 129 0.1538 0.1662 REMARK 3 4 3.0200 - 2.7400 0.99 2785 139 0.1651 0.2155 REMARK 3 5 2.7400 - 2.5400 0.99 2755 147 0.1691 0.1873 REMARK 3 6 2.5400 - 2.3900 0.99 2744 158 0.1709 0.1914 REMARK 3 7 2.3900 - 2.2700 1.00 2756 149 0.1726 0.2079 REMARK 3 8 2.2700 - 2.1700 1.00 2767 146 0.1767 0.2142 REMARK 3 9 2.1700 - 2.0900 1.00 2766 137 0.1716 0.1634 REMARK 3 10 2.0900 - 2.0200 1.00 2755 140 0.1771 0.1861 REMARK 3 11 2.0200 - 1.9600 1.00 2741 155 0.1752 0.1978 REMARK 3 12 1.9600 - 1.9000 1.00 2771 137 0.1785 0.2014 REMARK 3 13 1.9000 - 1.8500 1.00 2742 140 0.1813 0.2315 REMARK 3 14 1.8500 - 1.8000 1.00 2762 141 0.1874 0.2260 REMARK 3 15 1.8000 - 1.7600 1.00 2783 156 0.1936 0.2276 REMARK 3 16 1.7600 - 1.7300 1.00 2717 131 0.1999 0.2265 REMARK 3 17 1.7300 - 1.6900 1.00 2734 148 0.1964 0.2283 REMARK 3 18 1.6900 - 1.6600 1.00 2798 144 0.2025 0.2827 REMARK 3 19 1.6600 - 1.6300 1.00 2715 149 0.2034 0.2371 REMARK 3 20 1.6300 - 1.6000 1.00 2771 136 0.2048 0.2362 REMARK 3 21 1.6000 - 1.5800 1.00 2747 145 0.2103 0.2242 REMARK 3 22 1.5800 - 1.5500 1.00 2745 135 0.2126 0.2295 REMARK 3 23 1.5500 - 1.5300 1.00 2791 146 0.2208 0.2618 REMARK 3 24 1.5300 - 1.5100 1.00 2668 161 0.2264 0.2721 REMARK 3 25 1.5100 - 1.4900 1.00 2802 156 0.2295 0.2288 REMARK 3 26 1.4900 - 1.4700 0.99 2685 137 0.2390 0.2433 REMARK 3 27 1.4700 - 1.4500 0.99 2732 148 0.2437 0.3003 REMARK 3 28 1.4500 - 1.4300 0.99 2718 137 0.2524 0.2654 REMARK 3 29 1.4300 - 1.4200 0.98 2706 133 0.2700 0.2795 REMARK 3 30 1.4200 - 1.4000 0.98 2700 142 0.2808 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3703 REMARK 3 ANGLE : 1.086 5091 REMARK 3 CHIRALITY : 0.095 583 REMARK 3 PLANARITY : 0.008 656 REMARK 3 DIHEDRAL : 13.069 1370 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1230 THROUGH 1240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0633 11.2534 42.5683 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 1.0718 REMARK 3 T33: 0.1620 T12: 0.3049 REMARK 3 T13: 0.0848 T23: -0.1110 REMARK 3 L TENSOR REMARK 3 L11: 0.9498 L22: 1.2431 REMARK 3 L33: 3.6211 L12: -0.4160 REMARK 3 L13: -1.3464 L23: 1.1867 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.1953 S13: 0.1441 REMARK 3 S21: 0.1364 S22: 0.0462 S23: 0.0122 REMARK 3 S31: -0.2293 S32: -0.0079 S33: -0.1281 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 3 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1501 6.1988 24.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.5854 REMARK 3 T33: 0.2357 T12: 0.0364 REMARK 3 T13: 0.0396 T23: 0.1201 REMARK 3 L TENSOR REMARK 3 L11: 0.9420 L22: 0.2948 REMARK 3 L33: 1.3376 L12: -0.1176 REMARK 3 L13: 0.2664 L23: -0.0845 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -1.0599 S13: -0.2004 REMARK 3 S21: 0.0859 S22: 0.2391 S23: 0.2616 REMARK 3 S31: -0.0553 S32: -0.7716 S33: -0.1555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6699 -3.3624 -3.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.0653 REMARK 3 T33: 0.1539 T12: 0.0047 REMARK 3 T13: -0.0174 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.1176 L22: 4.5887 REMARK 3 L33: 1.0331 L12: -1.1883 REMARK 3 L13: -0.2153 L23: 1.2121 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.1130 S13: 0.0381 REMARK 3 S21: -0.0986 S22: -0.1269 S23: -0.0900 REMARK 3 S31: -0.0205 S32: -0.1183 S33: 0.0589 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1793 4.6860 29.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.3070 REMARK 3 T33: 0.1387 T12: 0.0502 REMARK 3 T13: -0.0152 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.2951 L22: 0.5692 REMARK 3 L33: 4.8304 L12: -0.1239 REMARK 3 L13: -0.7908 L23: 0.4231 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: -0.5790 S13: -0.0170 REMARK 3 S21: 0.1512 S22: 0.1314 S23: -0.0075 REMARK 3 S31: -0.0974 S32: -0.1770 S33: 0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 116 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4296 4.0077 -9.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.0880 REMARK 3 T33: 0.1307 T12: 0.0262 REMARK 3 T13: -0.0073 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.6384 L22: 0.7657 REMARK 3 L33: 3.2445 L12: -0.8594 REMARK 3 L13: 1.4768 L23: -0.9060 REMARK 3 S TENSOR REMARK 3 S11: 0.1351 S12: 0.3809 S13: -0.0025 REMARK 3 S21: -0.1042 S22: -0.1031 S23: 0.0111 REMARK 3 S31: 0.0473 S32: 0.1339 S33: -0.0337 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86876 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE AND 20% (W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.79450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.22200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.79450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.22200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 584 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1241 REMARK 465 VAL A 1242 REMARK 465 SER A 1243 REMARK 465 THR A 1244 REMARK 465 CYS L 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1237 CG CD OE1 OE2 REMARK 470 LYS A1240 CG CD CE NZ REMARK 470 TYR H 56 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS H 67 CG CD CE NZ REMARK 470 LYS H 214 CG CD CE NZ REMARK 470 LYS H 222 CG CD CE NZ REMARK 470 ASN L 3 CG OD1 ND2 REMARK 470 LYS L 26 CG CD CE NZ REMARK 470 SER L 64 OG REMARK 470 LYS L 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 315 O HOH L 530 2.07 REMARK 500 O HOH H 572 O HOH H 617 2.09 REMARK 500 O HOH H 563 O HOH L 493 2.13 REMARK 500 O HOH H 401 O HOH H 653 2.15 REMARK 500 O HOH H 528 O HOH H 612 2.15 REMARK 500 O HOH L 531 O HOH L 543 2.18 REMARK 500 O HOH H 638 O HOH L 353 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 549 O HOH L 416 4545 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 98 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS H 204 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 45 -76.84 -146.72 REMARK 500 ASP H 152 65.23 74.17 REMARK 500 ALA L 59 -34.36 69.13 REMARK 500 ALA L 92 168.46 178.38 REMARK 500 SER L 101 -164.43 -110.45 REMARK 500 LYS L 197 -60.88 -101.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 7M55 A 1230 1244 UNP K9N5Q8 SPIKE_MERS1 1230 1244 DBREF 7M55 H 3 222 PDB 7M55 7M55 3 222 DBREF 7M55 L 3 221 PDB 7M55 7M55 3 221 SEQRES 1 A 15 ASP PHE GLN ASP GLU LEU ASP GLU PHE PHE LYS ASN VAL SEQRES 2 A 15 SER THR SEQRES 1 H 220 GLU VAL GLN LEU GLN GLN SER GLY PRO VAL LEU VAL LYS SEQRES 2 H 220 PRO GLY ALA SER VAL ARG MET SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR ILE THR ASP TYR TYR LEU ASN TRP VAL LYS GLN SEQRES 4 H 220 SER HIS GLY LYS SER LEU GLU TRP LEU GLY VAL LEU ASN SEQRES 5 H 220 PRO TYR SER GLY GLY SER LEU TYR SER GLN THR PHE LYS SEQRES 6 H 220 GLY LYS ALA THR LEU THR VAL ASP ARG SER SER SER THR SEQRES 7 H 220 ALA TYR LEU GLU LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 220 ALA VAL TYR TYR CYS ALA ARG GLN LEU GLY ARG GLY ASN SEQRES 9 H 220 GLY LEU ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 220 SER SER VAL SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 220 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 220 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 220 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 220 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 220 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 220 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 220 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 L 219 ASN ILE MET MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 219 GLN SER VAL LEU HIS SER SER ASP GLN LYS ASN TYR LEU SEQRES 4 L 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 L 219 TYR PHE CYS HIS GLN TYR LEU SER SER TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET GOL H 301 6 HET GOL H 302 6 HET GOL H 303 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *562(H2 O) HELIX 1 AA1 ASP A 1230 LYS A 1240 1 11 HELIX 2 AA2 THR H 30 TYR H 34 5 5 HELIX 3 AA3 ARG H 76 SER H 78 5 3 HELIX 4 AA4 THR H 89 SER H 93 5 5 HELIX 5 AA5 SER H 164 ALA H 166 5 3 HELIX 6 AA6 SER H 195 LEU H 197 5 3 HELIX 7 AA7 LYS H 209 ASN H 212 5 4 HELIX 8 AA8 GLN L 87 LEU L 91 5 5 HELIX 9 AA9 SER L 128 SER L 134 1 7 HELIX 10 AB1 LYS L 190 GLU L 194 1 5 SHEET 1 AA1 4 GLN H 5 GLN H 8 0 SHEET 2 AA1 4 VAL H 20 SER H 27 -1 O LYS H 25 N GLN H 7 SHEET 3 AA1 4 THR H 80 LEU H 85 -1 O ALA H 81 N CYS H 24 SHEET 4 AA1 4 ALA H 70 ASP H 75 -1 N ASP H 75 O THR H 80 SHEET 1 AA2 6 VAL H 12 VAL H 14 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N VAL H 14 SHEET 3 AA2 6 ALA H 94 GLN H 101 -1 N ALA H 94 O VAL H 117 SHEET 4 AA2 6 TYR H 35 GLN H 41 -1 N VAL H 39 O TYR H 97 SHEET 5 AA2 6 GLU H 48 LEU H 53 -1 O LEU H 53 N LEU H 36 SHEET 6 AA2 6 SER H 60 TYR H 62 -1 O LEU H 61 N VAL H 52 SHEET 1 AA3 4 VAL H 12 VAL H 14 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N VAL H 14 SHEET 3 AA3 4 ALA H 94 GLN H 101 -1 N ALA H 94 O VAL H 117 SHEET 4 AA3 4 LEU H 108 TRP H 111 -1 O TYR H 110 N ARG H 100 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 THR H 139 SER H 140 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O THR H 143 N SER H 140 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 ILE H 203 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AA6 3 THR H 213 ARG H 218 -1 O VAL H 215 N VAL H 206 SHEET 1 AA7 4 MET L 6 SER L 9 0 SHEET 2 AA7 4 VAL L 21 SER L 27 -1 O SER L 24 N SER L 9 SHEET 3 AA7 4 ASP L 78 ILE L 83 -1 O PHE L 79 N CYS L 25 SHEET 4 AA7 4 PHE L 70 SER L 75 -1 N THR L 71 O THR L 82 SHEET 1 AA8 6 SER L 12 SER L 16 0 SHEET 2 AA8 6 THR L 109 LYS L 114 1 O GLU L 112 N LEU L 13 SHEET 3 AA8 6 ALA L 92 GLN L 98 -1 N ALA L 92 O LEU L 111 SHEET 4 AA8 6 LEU L 41 GLN L 46 -1 N ALA L 42 O HIS L 97 SHEET 5 AA8 6 LYS L 53 TYR L 57 -1 O LEU L 55 N TRP L 43 SHEET 6 AA8 6 THR L 61 ARG L 62 -1 O THR L 61 N TYR L 57 SHEET 1 AA9 4 SER L 12 SER L 16 0 SHEET 2 AA9 4 THR L 109 LYS L 114 1 O GLU L 112 N LEU L 13 SHEET 3 AA9 4 ALA L 92 GLN L 98 -1 N ALA L 92 O LEU L 111 SHEET 4 AA9 4 THR L 104 PHE L 105 -1 O THR L 104 N GLN L 98 SHEET 1 AB1 2 LEU L 32 HIS L 33 0 SHEET 2 AB1 2 LYS L 38 ASN L 39 -1 O LYS L 38 N HIS L 33 SHEET 1 AB2 4 SER L 121 PHE L 125 0 SHEET 2 AB2 4 THR L 136 PHE L 146 -1 O LEU L 142 N PHE L 123 SHEET 3 AB2 4 TYR L 180 SER L 189 -1 O LEU L 182 N LEU L 143 SHEET 4 AB2 4 SER L 166 VAL L 170 -1 N GLN L 167 O THR L 185 SHEET 1 AB3 4 ALA L 160 LEU L 161 0 SHEET 2 AB3 4 ALA L 151 VAL L 157 -1 N VAL L 157 O ALA L 160 SHEET 3 AB3 4 VAL L 198 HIS L 205 -1 O GLU L 202 N GLN L 154 SHEET 4 AB3 4 VAL L 212 ASN L 217 -1 O VAL L 212 N VAL L 203 SSBOND 1 CYS H 24 CYS H 98 1555 1555 2.04 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 3 CYS L 25 CYS L 96 1555 1555 2.10 SSBOND 4 CYS L 141 CYS L 201 1555 1555 2.06 CISPEP 1 PHE H 154 PRO H 155 0 -5.21 CISPEP 2 GLU H 156 PRO H 157 0 -0.93 CISPEP 3 SER L 9 PRO L 10 0 -6.12 CISPEP 4 SER L 9 PRO L 10 0 -8.04 CISPEP 5 TYR L 147 PRO L 148 0 2.18 CRYST1 93.589 60.444 79.710 90.00 93.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010685 0.000000 0.000700 0.00000 SCALE2 0.000000 0.016544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012572 0.00000