PDB Short entry for 7MHL HEADER HYDROLASE 15-APR-21 7MHL TITLE ENSEMBLE REFINEMENT STRUCTURE OF SARS-COV-2 MAIN PROTEASE (MPRO) AT TITLE 2 100 K CAVEAT 7MHL DUE TO ENSEMBLE REFINEMENT, RESIDUES ILE A 106 AND GLN A 107 CAVEAT 2 7MHL THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 3 7MHL PROPERLY LINKED IN MODELS 18, 20, 27, 31, 38, 39, AND 40. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS SARS-COV-2, CORONAVIRUS, MAIN PROTEASE, 3CLPRO, MPRO, HYDROLASE, KEYWDS 2 ENSEMBLE REFINEMENT, TEMPERATURE SERIES, TEMPERATURE, KEYWDS 3 MULTITEMPERATURE EXPDTA X-RAY DIFFRACTION NUMMDL 54 AUTHOR A.EBRAHIM,B.T.RILEY,D.KUMARAN,B.ANDI,M.R.FUCHS,S.MCSWEENEY,D.A.KEEDY REVDAT 7 25-OCT-23 7MHL 1 REMARK REVDAT 6 08-MAR-23 7MHL 1 JRNL REVDAT 5 14-SEP-22 7MHL 1 JRNL REVDAT 4 07-SEP-22 7MHL 1 JRNL REVDAT 3 06-APR-22 7MHL 1 TITLE CAVEAT COMPND SOURCE REVDAT 3 2 1 KEYWDS JRNL REMARK HET REVDAT 3 3 1 HETNAM FORMUL HELIX SHEET REVDAT 3 4 1 LINK SITE ATOM REVDAT 2 26-MAY-21 7MHL 1 JRNL REVDAT 1 12-MAY-21 7MHL 0 JRNL AUTH A.EBRAHIM,B.T.RILEY,D.KUMARAN,B.ANDI,M.R.FUCHS,S.MCSWEENEY, JRNL AUTH 2 D.A.KEEDY JRNL TITL THE TEM-PER-ATURE-DEPENDENT CONFORMATIONAL ENSEMBLE OF JRNL TITL 2 SARS-COV-2 MAIN PROTEASE (M PRO ). JRNL REF IUCRJ V. 9 682 2022 JRNL REFN ESSN 2052-2525 JRNL PMID 36071812 JRNL DOI 10.1107/S2052252522007497 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.EBRAHIM,B.T.RILEY,D.KUMARAN,B.ANDI,M.R.FUCHS,S.MCSWEENEY, REMARK 1 AUTH 2 D.A.KEEDY REMARK 1 TITL THE TEMPERATURE-DEPENDENT CONFORMATIONAL ENSEMBLE OF REMARK 1 TITL 2 SARS-COV-2 MAIN PROTEASE (M PRO ). REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33972941 REMARK 1 DOI 10.1101/2021.05.03.437411 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.EBRAHIM,B.T.RILEY,D.KUMARAN,B.ANDI,M.R.FUCHS,S.MCSWEENEY, REMARK 1 AUTH 2 D.A.KEEDY REMARK 1 TITL THE TEMPERATURE-DEPENDENT CONFORMATIONAL ENSEMBLE OF REMARK 1 TITL 2 SARS-COV-2 MAIN PROTEASE (MPRO) REMARK 1 REF IUCRJ V. 9 2022 REMARK 1 REFN ESSN 2052-2525 REMARK 1 DOI 10.1107/S2052252522007497 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.EBRAHIM,B.T.RILEY,D.KUMARAN,B.ANDI,M.R.FUCHS,S.MCSWEENEY, REMARK 1 AUTH 2 D.A.KEEDY REMARK 1 TITL THE TEMPERATURE-DEPENDENT CONFORMATIONAL ENSEMBLE OF REMARK 1 TITL 2 SARS-COV-2 MAIN PROTEASE (M PRO ). REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33972941 REMARK 1 DOI 10.1101/2021.05.03.437411 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.ENSEMBLE_REFINEMENT:1.19.2_4158) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0470 - 3.7300 1.00 2666 136 0.1475 0.1862 REMARK 3 2 3.7300 - 2.9600 1.00 2596 130 0.1559 0.1997 REMARK 3 3 2.9600 - 2.5900 1.00 2578 148 0.1510 0.2093 REMARK 3 4 2.5900 - 2.3500 1.00 2582 143 0.1572 0.2301 REMARK 3 5 2.3500 - 2.1800 1.00 2553 142 0.1627 0.2240 REMARK 3 6 2.1800 - 2.0500 1.00 2578 133 0.1806 0.2579 REMARK 3 7 2.0500 - 1.9500 1.00 2591 135 0.1796 0.2501 REMARK 3 8 1.9500 - 1.8700 1.00 2550 126 0.1837 0.2698 REMARK 3 9 1.8700 - 1.7900 1.00 2575 112 0.1914 0.3140 REMARK 3 10 1.7900 - 1.7300 1.00 2588 127 0.1832 0.2653 REMARK 3 11 1.7300 - 1.6800 1.00 2542 148 0.1908 0.2643 REMARK 3 12 1.6800 - 1.6300 1.00 2590 142 0.2031 0.2765 REMARK 3 13 1.6300 - 1.5900 1.00 2520 143 0.2080 0.2948 REMARK 3 14 1.5900 - 1.5500 0.97 2483 141 0.2250 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.902-GFFA11588-DIALS REMARK 200 -1.14 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.14.13-G10ECFBB15-RELEASE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 48.047 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.365 REMARK 200 R MERGE (I) : 0.15790 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.2643 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50740 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.028 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.18.2_3874 REMARK 200 STARTING MODEL: 6YB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG4000, 100 MM HEPES, PH 7.0, 3 REMARK 280 -5% DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.85300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.85300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 CYS A 156 CB CYS A 156 SG -0.185 REMARK 500 1 MET A 165 CB MET A 165 CG 0.257 REMARK 500 1 PHE A 294 CE1 PHE A 294 CZ 0.161 REMARK 500 2 CYS A 44 CB CYS A 44 SG -0.097 REMARK 500 2 CYS A 300 CB CYS A 300 SG -0.104 REMARK 500 4 CYS A 22 CB CYS A 22 SG -0.144 REMARK 500 5 CYS A 117 CB CYS A 117 SG -0.110 REMARK 500 5 CYS A 300 CB CYS A 300 SG -0.142 REMARK 500 6 CYS A 117 CB CYS A 117 SG -0.098 REMARK 500 6 CYS A 128 CB CYS A 128 SG 0.115 REMARK 500 7 CYS A 128 CB CYS A 128 SG -0.227 REMARK 500 7 CYS A 156 CB CYS A 156 SG 0.115 REMARK 500 8 CYS A 117 CB CYS A 117 SG -0.221 REMARK 500 9 HIS A 41 CA HIS A 41 C -0.281 REMARK 500 13 GLU A 166 CG GLU A 166 CD 0.104 REMARK 500 15 CYS A 117 CB CYS A 117 SG 0.157 REMARK 500 15 CYS A 145 CB CYS A 145 SG 0.304 REMARK 500 16 CYS A 128 CB CYS A 128 SG -0.098 REMARK 500 17 GLU A 178 CG GLU A 178 CD 0.105 REMARK 500 18 ILE A 106 C GLN A 107 N -0.138 REMARK 500 18 CYS A 128 CB CYS A 128 SG 0.282 REMARK 500 19 CYS A 156 CB CYS A 156 SG -0.161 REMARK 500 20 ILE A 106 C GLN A 107 N -0.175 REMARK 500 20 CYS A 128 CB CYS A 128 SG -0.241 REMARK 500 21 CYS A 145 CB CYS A 145 SG 0.210 REMARK 500 21 CYS A 156 CB CYS A 156 SG -0.135 REMARK 500 22 MET A 82 CB MET A 82 CG 0.242 REMARK 500 22 MET A 82 CG MET A 82 SD 0.180 REMARK 500 22 VAL A 157 CB VAL A 157 CG1 0.134 REMARK 500 22 GLU A 288 CB GLU A 288 CG 0.139 REMARK 500 23 CYS A 156 CB CYS A 156 SG -0.182 REMARK 500 23 CYS A 300 CB CYS A 300 SG -0.226 REMARK 500 24 CYS A 117 CB CYS A 117 SG 0.163 REMARK 500 25 CYS A 44 CB CYS A 44 SG -0.145 REMARK 500 25 GLU A 270 CB GLU A 270 CG 0.114 REMARK 500 25 GLU A 290 CB GLU A 290 CG 0.120 REMARK 500 25 GLU A 290 CG GLU A 290 CD 0.091 REMARK 500 25 CYS A 300 CB CYS A 300 SG 0.108 REMARK 500 26 CYS A 128 CB CYS A 128 SG 0.146 REMARK 500 27 ILE A 106 C GLN A 107 N -0.144 REMARK 500 27 CYS A 128 CB CYS A 128 SG 0.168 REMARK 500 31 ILE A 106 C GLN A 107 N -0.151 REMARK 500 31 CYS A 156 CB CYS A 156 SG -0.137 REMARK 500 33 CYS A 128 CB CYS A 128 SG -0.113 REMARK 500 33 CYS A 145 CB CYS A 145 SG 0.162 REMARK 500 35 ARG A 40 C HIS A 41 N 0.167 REMARK 500 36 GLU A 47 CB GLU A 47 CG 0.115 REMARK 500 36 GLU A 178 CG GLU A 178 CD 0.097 REMARK 500 36 GLY A 275 N GLY A 275 CA -0.111 REMARK 500 38 ILE A 106 C GLN A 107 N -0.163 REMARK 500 REMARK 500 THIS ENTRY HAS 82 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 MET A 82 CG - SD - CE ANGL. DEV. = 13.8 DEGREES REMARK 500 1 MET A 165 CB - CG - SD ANGL. DEV. = 21.2 DEGREES REMARK 500 2 MET A 82 CG - SD - CE ANGL. DEV. = 10.4 DEGREES REMARK 500 2 LEU A 287 CB - CG - CD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 3 LEU A 50 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 3 LEU A 58 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 3 MET A 235 CG - SD - CE ANGL. DEV. = 12.8 DEGREES REMARK 500 3 CYS A 300 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 4 LEU A 50 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 4 LEU A 58 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 7 GLY A 302 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 8 PRO A 52 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 8 MET A 82 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 9 ASP A 33 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 9 HIS A 41 CA - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 9 HIS A 41 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 9 CYS A 156 CA - CB - SG ANGL. DEV. = -11.2 DEGREES REMARK 500 9 GLY A 302 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 11 MET A 49 CB - CG - SD ANGL. DEV. = -19.9 DEGREES REMARK 500 12 CYS A 128 CA - CB - SG ANGL. DEV. = 10.4 DEGREES REMARK 500 12 TYR A 154 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 13 CYS A 44 CA - CB - SG ANGL. DEV. = -12.9 DEGREES REMARK 500 13 LEU A 141 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 14 LEU A 167 CB - CG - CD1 ANGL. DEV. = -13.7 DEGREES REMARK 500 14 ASP A 229 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 15 CYS A 117 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 15 CYS A 145 CA - CB - SG ANGL. DEV. = 18.9 DEGREES REMARK 500 15 LEU A 167 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 17 PRO A 52 C - N - CD ANGL. DEV. = -22.8 DEGREES REMARK 500 17 CYS A 117 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 18 MET A 6 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 18 LEU A 50 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 18 CYS A 128 CB - CA - C ANGL. DEV. = 9.7 DEGREES REMARK 500 18 ASP A 155 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 18 ASP A 229 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 18 PHE A 305 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 19 CYS A 156 CA - CB - SG ANGL. DEV. = -28.1 DEGREES REMARK 500 20 LEU A 50 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 20 CYS A 128 CA - CB - SG ANGL. DEV. = -11.8 DEGREES REMARK 500 21 PRO A 52 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 21 MET A 82 CB - CG - SD ANGL. DEV. = 18.1 DEGREES REMARK 500 21 CYS A 145 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 22 PRO A 52 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 22 MET A 82 CB - CG - SD ANGL. DEV. = 22.1 DEGREES REMARK 500 22 CYS A 156 CA - CB - SG ANGL. DEV. = -16.2 DEGREES REMARK 500 22 MET A 276 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 23 MET A 82 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 23 CYS A 156 CA - CB - SG ANGL. DEV. = -24.9 DEGREES REMARK 500 23 MET A 276 CG - SD - CE ANGL. DEV. = 12.5 DEGREES REMARK 500 24 CYS A 117 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 117 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 33 -134.96 53.87 REMARK 500 1 CYS A 44 -159.25 -73.23 REMARK 500 1 LEU A 50 -20.74 120.76 REMARK 500 1 ASN A 51 124.33 161.48 REMARK 500 1 ASN A 53 82.51 -55.19 REMARK 500 1 ASN A 84 -115.35 48.07 REMARK 500 1 ASN A 119 69.85 21.75 REMARK 500 1 ASN A 142 108.01 -51.76 REMARK 500 1 TYR A 154 74.69 -60.86 REMARK 500 1 ASP A 155 44.89 144.61 REMARK 500 1 CYS A 156 130.47 175.85 REMARK 500 1 GLN A 192 -22.12 -150.65 REMARK 500 1 ALA A 193 128.73 51.09 REMARK 500 1 ALA A 194 -70.05 -63.39 REMARK 500 1 THR A 196 109.80 -41.78 REMARK 500 1 MET A 235 35.29 -85.17 REMARK 500 1 SER A 301 -153.74 -131.33 REMARK 500 1 THR A 304 173.80 172.70 REMARK 500 1 PHE A 305 -19.29 -161.12 REMARK 500 2 ASP A 33 -135.52 50.15 REMARK 500 2 SER A 46 -41.92 -18.66 REMARK 500 2 ASP A 48 -38.37 -142.34 REMARK 500 2 MET A 49 -110.55 -123.92 REMARK 500 2 LEU A 50 -68.36 41.37 REMARK 500 2 PRO A 52 21.24 -72.94 REMARK 500 2 ILE A 59 -68.74 -23.79 REMARK 500 2 ARG A 60 10.26 -62.71 REMARK 500 2 ASN A 84 -117.61 46.50 REMARK 500 2 PHE A 140 75.85 -152.05 REMARK 500 2 TYR A 154 64.69 -47.58 REMARK 500 2 ASP A 155 -31.47 178.89 REMARK 500 2 GLN A 189 74.66 -116.65 REMARK 500 2 ALA A 193 91.00 74.16 REMARK 500 2 ASN A 277 38.40 25.61 REMARK 500 2 GLN A 299 49.78 -106.46 REMARK 500 2 CYS A 300 42.29 -143.87 REMARK 500 2 SER A 301 -126.55 -87.66 REMARK 500 2 PHE A 305 35.67 -173.02 REMARK 500 3 THR A 24 44.43 -86.64 REMARK 500 3 ASP A 33 -135.79 52.16 REMARK 500 3 SER A 46 -53.27 6.53 REMARK 500 3 ASP A 48 -6.04 -145.68 REMARK 500 3 ASN A 51 102.91 142.75 REMARK 500 3 PRO A 52 75.18 -110.26 REMARK 500 3 VAL A 73 99.98 -29.21 REMARK 500 3 ASN A 84 -119.99 52.50 REMARK 500 3 TYR A 154 -48.77 -22.49 REMARK 500 3 ASP A 187 44.66 -87.64 REMARK 500 3 ARG A 222 35.51 -98.29 REMARK 500 3 GLN A 256 -72.41 -45.26 REMARK 500 REMARK 500 THIS ENTRY HAS 1370 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 48 MET A 49 1 -143.69 REMARK 500 MET A 49 LEU A 50 1 148.78 REMARK 500 GLN A 69 ALA A 70 1 148.42 REMARK 500 ALA A 70 GLY A 71 1 -144.46 REMARK 500 ASN A 72 VAL A 73 1 -142.48 REMARK 500 GLN A 299 CYS A 300 1 141.81 REMARK 500 CYS A 300 SER A 301 1 -121.72 REMARK 500 VAL A 303 THR A 304 1 -144.48 REMARK 500 GLU A 47 ASP A 48 2 -130.08 REMARK 500 ASP A 153 TYR A 154 2 -136.10 REMARK 500 ARG A 298 GLN A 299 2 143.37 REMARK 500 THR A 304 PHE A 305 2 140.81 REMARK 500 ASN A 51 PRO A 52 3 144.12 REMARK 500 ASP A 153 TYR A 154 3 -129.08 REMARK 500 GLN A 299 CYS A 300 3 -149.27 REMARK 500 VAL A 303 THR A 304 3 -144.11 REMARK 500 GLU A 47 ASP A 48 4 -135.76 REMARK 500 ASN A 51 PRO A 52 4 137.96 REMARK 500 ASP A 153 TYR A 154 4 -145.71 REMARK 500 GLY A 302 VAL A 303 4 144.69 REMARK 500 SER A 46 GLU A 47 5 136.05 REMARK 500 ASN A 72 VAL A 73 5 -144.57 REMARK 500 SER A 46 GLU A 47 6 144.34 REMARK 500 GLN A 189 THR A 190 6 148.24 REMARK 500 CYS A 300 SER A 301 6 147.10 REMARK 500 THR A 45 SER A 46 7 -148.93 REMARK 500 ILE A 152 ASP A 153 7 140.28 REMARK 500 GLN A 299 CYS A 300 7 115.72 REMARK 500 SER A 301 GLY A 302 7 -144.18 REMARK 500 GLY A 302 VAL A 303 7 -131.08 REMARK 500 VAL A 303 THR A 304 7 -144.77 REMARK 500 HIS A 41 VAL A 42 8 -146.77 REMARK 500 ASN A 51 PRO A 52 8 146.45 REMARK 500 VAL A 68 GLN A 69 8 -136.90 REMARK 500 GLY A 71 ASN A 72 8 149.09 REMARK 500 ILE A 152 ASP A 153 8 -140.53 REMARK 500 ASP A 153 TYR A 154 8 -137.64 REMARK 500 ARG A 298 GLN A 299 8 -143.01 REMARK 500 GLN A 299 CYS A 300 8 149.76 REMARK 500 CYS A 300 SER A 301 8 133.17 REMARK 500 HIS A 41 VAL A 42 9 -143.91 REMARK 500 ASP A 48 MET A 49 9 -141.01 REMARK 500 ASN A 51 PRO A 52 9 129.94 REMARK 500 ASP A 155 CYS A 156 9 130.30 REMARK 500 CYS A 156 VAL A 157 9 148.30 REMARK 500 GLN A 299 CYS A 300 9 -119.84 REMARK 500 THR A 304 PHE A 305 9 -143.46 REMARK 500 CYS A 44 THR A 45 10 142.61 REMARK 500 ASN A 51 PRO A 52 10 -148.33 REMARK 500 GLN A 299 CYS A 300 10 -148.16 REMARK 500 REMARK 500 THIS ENTRY HAS 389 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 279 0.10 SIDE CHAIN REMARK 500 3 ARG A 4 0.09 SIDE CHAIN REMARK 500 3 ARG A 217 0.09 SIDE CHAIN REMARK 500 6 ARG A 188 0.08 SIDE CHAIN REMARK 500 6 ARG A 217 0.12 SIDE CHAIN REMARK 500 10 ARG A 222 0.08 SIDE CHAIN REMARK 500 11 ARG A 298 0.10 SIDE CHAIN REMARK 500 12 ARG A 188 0.09 SIDE CHAIN REMARK 500 13 ARG A 217 0.15 SIDE CHAIN REMARK 500 16 ARG A 4 0.12 SIDE CHAIN REMARK 500 18 ARG A 217 0.10 SIDE CHAIN REMARK 500 20 ARG A 4 0.17 SIDE CHAIN REMARK 500 20 ARG A 222 0.11 SIDE CHAIN REMARK 500 21 ARG A 217 0.07 SIDE CHAIN REMARK 500 25 ARG A 298 0.10 SIDE CHAIN REMARK 500 31 ARG A 188 0.07 SIDE CHAIN REMARK 500 33 ARG A 217 0.09 SIDE CHAIN REMARK 500 34 ARG A 298 0.12 SIDE CHAIN REMARK 500 35 HIS A 41 0.08 SIDE CHAIN REMARK 500 35 ARG A 60 0.08 SIDE CHAIN REMARK 500 35 ARG A 298 0.08 SIDE CHAIN REMARK 500 40 ARG A 217 0.08 SIDE CHAIN REMARK 500 42 ARG A 279 0.09 SIDE CHAIN REMARK 500 43 ARG A 4 0.10 SIDE CHAIN REMARK 500 43 ARG A 279 0.18 SIDE CHAIN REMARK 500 44 ARG A 4 0.10 SIDE CHAIN REMARK 500 45 ARG A 188 0.09 SIDE CHAIN REMARK 500 45 ARG A 217 0.08 SIDE CHAIN REMARK 500 46 ARG A 60 0.09 SIDE CHAIN REMARK 500 46 ARG A 279 0.08 SIDE CHAIN REMARK 500 47 ARG A 60 0.10 SIDE CHAIN REMARK 500 47 ARG A 279 0.08 SIDE CHAIN REMARK 500 48 ARG A 279 0.10 SIDE CHAIN REMARK 500 49 ARG A 217 0.10 SIDE CHAIN REMARK 500 49 ARG A 222 0.09 SIDE CHAIN REMARK 500 50 ARG A 4 0.16 SIDE CHAIN REMARK 500 50 ARG A 222 0.10 SIDE CHAIN REMARK 500 51 ARG A 279 0.08 SIDE CHAIN REMARK 500 51 ARG A 298 0.12 SIDE CHAIN REMARK 500 52 ARG A 217 0.08 SIDE CHAIN REMARK 500 52 ARG A 298 0.11 SIDE CHAIN REMARK 500 53 ARG A 4 0.09 SIDE CHAIN REMARK 500 53 ARG A 60 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 25 ASP A 155 -10.68 REMARK 500 27 ILE A 152 10.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 644 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 635 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 641 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 664 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 504 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 528 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 617 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 609 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 635 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 678 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 608 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 643 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 618 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 521 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH A 641 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 606 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 594 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 613 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 615 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 645 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 614 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 639 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 642 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A 525 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 611 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 602 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 613 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 CYS A 145 SG 100.1 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MHM RELATED DB: PDB REMARK 900 ENSEMBLE REFINEMENT AT 240 K REMARK 900 RELATED ID: 7MHN RELATED DB: PDB REMARK 900 ENSEMBLE REFINEMENT AT 277 K REMARK 900 RELATED ID: 7MHO RELATED DB: PDB REMARK 900 ENSEMBLE REFINEMENT AT 298 K REMARK 900 RELATED ID: 7MHP RELATED DB: PDB REMARK 900 ENSEMBLE REFINEMENT AT 298 K, 99% RH REMARK 900 RELATED ID: 7MHQ RELATED DB: PDB REMARK 900 ENSEMBLE REFINEMENT AT 310 K REMARK 900 RELATED ID: 7MHF RELATED DB: PDB REMARK 900 REFINEMENT AT 100 K REMARK 900 RELATED ID: 7MHG RELATED DB: PDB REMARK 900 REFINEMENT AT 240 K REMARK 900 RELATED ID: 7MHH RELATED DB: PDB REMARK 900 REFINEMENT AT 277 K REMARK 900 RELATED ID: 7MHI RELATED DB: PDB REMARK 900 REFINEMENT AT 298 K REMARK 900 RELATED ID: 7MHJ RELATED DB: PDB REMARK 900 REFINEMENT AT 298 K, 99% RH REMARK 900 RELATED ID: 7MHK RELATED DB: PDB REMARK 900 REFINEMENT AT 310 K DBREF 7MHL A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN HET DMS A 401 10 HET DMS A 402 10 HET DMS A 403 10 HET DMS A 404 10 HET DMS A 405 10 HET ZN A 406 1 HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION FORMUL 2 DMS 5(C2 H6 O S) FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *190(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 GLY A 215 LEU A 220 5 6 HELIX 7 AA7 THR A 226 MET A 235 1 10 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 ARG A 298 1 7 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N GLN A 83 O VAL A 86 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N GLY A 149 O CYS A 160 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 LINK NE2 HIS A 41 ZN ZN A 406 1555 1555 2.44 LINK SG CYS A 145 ZN ZN A 406 1555 1555 2.52 CRYST1 113.706 53.320 44.567 90.00 102.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008795 0.000000 0.002024 0.00000 SCALE2 0.000000 0.018755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023025 0.00000