PDB Short entry for 7OLO HEADER OXIDOREDUCTASE 20-MAY-21 7OLO TITLE DIOXYGENASE ASQJ MUTANT (V72I) IN COMPLEX WITH 2B AND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON/ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ASQJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4'-METHOXYVIRIDICATIN/ASPOQUINOLONE BIOSYNTHESIS CLUSTER COMPND 5 PROTEIN ASQJ,ASPOQUINOLONE BIOSYNTHESIS PROTEIN J; COMPND 6 EC: 1.14.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 7 GENE: ASQJ, AN9227; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS QUINOLONE BIOSYNTHESIS, MOLECULAR ENGINEERING, EPOXIDATION, CATALYTIC KEYWDS 2 MECHANISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.AUMAN,S.L.MADER,F.ECKER,K.DORST,A.BRAEUER,G.WIDMALM,M.GROLL, AUTHOR 2 V.R.I.KAILA REVDAT 4 31-JAN-24 7OLO 1 REMARK REVDAT 3 14-SEP-22 7OLO 1 JRNL REVDAT 2 31-AUG-22 7OLO 1 JRNL REVDAT 1 01-JUN-22 7OLO 0 JRNL AUTH D.AUMAN,F.ECKER,S.L.MADER,K.M.DORST,A.BRAUER,G.WIDMALM, JRNL AUTH 2 M.GROLL,V.R.I.KAILA JRNL TITL PEROXY INTERMEDIATE DRIVES CARBON BOND ACTIVATION IN THE JRNL TITL 2 DIOXYGENASE ASQJ. JRNL REF J.AM.CHEM.SOC. V. 144 15622 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35980821 JRNL DOI 10.1021/JACS.2C05650 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 19368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2301 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2183 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3138 ; 1.267 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5063 ; 1.085 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;32.400 ;21.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;14.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2534 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4482 ; 0.315 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1963 -18.2606 -13.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.0073 T22: 0.0648 REMARK 3 T33: 0.0560 T12: 0.0022 REMARK 3 T13: 0.0156 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3505 L22: 0.2766 REMARK 3 L33: 0.2649 L12: -0.0100 REMARK 3 L13: 0.1000 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.0099 S13: 0.0288 REMARK 3 S21: 0.0050 S22: 0.0015 S23: -0.0500 REMARK 3 S31: -0.0013 S32: 0.0274 S33: 0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7OLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5DAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES/NAOH, 1.25 M LIBR, 26% REMARK 280 PEG 6000, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.62000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.62000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.66000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.99000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.62000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.66000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.99000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.62000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -73.98000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.66000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 547 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 5 REMARK 465 HIS A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 HIS A 296 REMARK 465 ASP A 297 REMARK 465 ASP A 298 REMARK 465 GLU A 299 REMARK 465 ALA A 300 REMARK 465 GLU A 301 REMARK 465 PRO A 302 REMARK 465 LEU A 303 REMARK 465 CYS A 304 REMARK 465 ARG A 305 REMARK 465 GLU A 306 REMARK 465 THR A 307 REMARK 465 ILE A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 76 31.60 -95.36 REMARK 500 MET A 137 3.58 86.67 REMARK 500 SER A 140 -39.24 -140.19 REMARK 500 THR A 220 -30.36 -132.38 REMARK 500 TRP A 262 40.46 -99.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 134 NE2 REMARK 620 2 ASP A 136 OD1 96.6 REMARK 620 3 HIS A 211 NE2 91.8 96.7 REMARK 620 4 GOL A 406 O3 172.6 89.9 90.8 REMARK 620 5 GOL A 406 O1 97.5 162.4 93.2 75.4 REMARK 620 6 GOL A 406 O2 98.3 91.7 166.0 78.1 76.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DAP RELATED DB: PDB REMARK 900 FE(II)/(ALPHA)KETOGLUTARATE-DEPENDENT DIOXYGENASE ASQJ DBREF 7OLO A 2 308 UNP Q5AR53 ASQJ_EMENI 110 416 SEQADV 7OLO SER A 1 UNP Q5AR53 EXPRESSION TAG SEQADV 7OLO ILE A 72 UNP Q5AR53 VAL 180 ENGINEERED MUTATION SEQRES 1 A 308 SER THR SER LYS ASP HIS VAL LYS SER GLN ILE PRO ARG SEQRES 2 A 308 LEU SER ALA ILE ASN ASP LEU HIS LYS ILE TRP PRO THR SEQRES 3 A 308 VAL GLU GLU HIS GLY ALA ALA ILE ILE GLU SER PHE LEU SEQRES 4 A 308 SER LEU ASP ILE VAL ARG ARG LEU ASN GLU GLU VAL ASP SEQRES 5 A 308 PRO PHE VAL LYS ILE GLU PRO ILE PRO ALA ALA LYS THR SEQRES 6 A 308 LYS ASP HIS PRO ASN HIS ILE LEU SER THR THR THR ARG SEQRES 7 A 308 LEU VAL ASN VAL LEU ALA PRO ILE SER LYS ALA TYR ARG SEQRES 8 A 308 GLU ASP VAL LEU ASN SER LYS VAL LEU HIS ARG ILE CYS SEQRES 9 A 308 SER ASP ALA PHE HIS VAL TYR GLY ASP TYR TRP VAL LEU SEQRES 10 A 308 MET GLY ALA VAL MET GLU LEU ALA PRO SER ASN PRO ALA SEQRES 11 A 308 GLN PRO LEU HIS ARG ASP MET ARG PHE SER HIS PRO ILE SEQRES 12 A 308 VAL GLU TYR LEU LYS PRO ASP ALA PRO ALA THR SER ILE SEQRES 13 A 308 ASN PHE LEU VAL ALA LEU SER PRO PHE THR ALA GLU ASN SEQRES 14 A 308 GLY ALA THR HIS VAL ILE LEU GLY SER HIS LYS TRP GLN SEQRES 15 A 308 ASN LEU SER ASN VAL SER MET ASP ALA THR VAL ARG ALA SEQRES 16 A 308 LEU MET ASN PRO GLY ASP ALA LEU LEU ILE THR ASP SER SEQRES 17 A 308 THR ILE HIS CYS GLY GLY ALA GLU THR THR GLY THR GLU SEQRES 18 A 308 THR ARG ARG LEU LEU THR ILE THR MET GLY ILE SER GLN SEQRES 19 A 308 LEU THR PRO LEU GLU SER ASN LEU ALA VAL PRO ARG PRO SEQRES 20 A 308 VAL ILE GLU SER LEU THR PRO LEU ALA GLN ARG LEU LEU SEQRES 21 A 308 GLY TRP ALA SER GLN ARG SER ALA ALA PRO ARG ASP ILE SEQRES 22 A 308 GLY LEU LEU THR ILE ARG GLY ASN SER ILE GLU LYS THR SEQRES 23 A 308 MET ASN LEU LYS ALA GLU GLN PRO LEU HIS ASP ASP GLU SEQRES 24 A 308 ALA GLU PRO LEU CYS ARG GLU THR ILE HET NI A 401 1 HET CO0 A 402 21 HET BR A 403 1 HET CL A 404 1 HET GOL A 405 6 HET GOL A 406 6 HETNAM NI NICKEL (II) ION HETNAM CO0 (3~{Z})-4-METHYL-3-(PHENYLMETHYLIDENE)-1~{H}-1,4- HETNAM 2 CO0 BENZODIAZEPINE-2,5-DIONE HETNAM BR BROMIDE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NI NI 2+ FORMUL 3 CO0 C17 H14 N2 O2 FORMUL 4 BR BR 1- FORMUL 5 CL CL 1- FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *76(H2 O) HELIX 1 AA1 ASP A 19 HIS A 21 5 3 HELIX 2 AA2 LYS A 22 GLY A 31 1 10 HELIX 3 AA3 SER A 40 GLU A 58 1 19 HELIX 4 AA4 SER A 87 ASP A 93 1 7 HELIX 5 AA5 SER A 97 HIS A 109 1 13 HELIX 6 AA6 HIS A 141 LEU A 147 5 7 HELIX 7 AA7 GLY A 177 TRP A 181 5 5 HELIX 8 AA8 SER A 188 THR A 192 5 5 HELIX 9 AA9 PRO A 245 GLU A 250 1 6 HELIX 10 AB1 THR A 253 LEU A 260 1 8 HELIX 11 AB2 SER A 282 ASN A 288 1 7 SHEET 1 AA1 7 ARG A 13 SER A 15 0 SHEET 2 AA1 7 ALA A 32 GLU A 36 1 O GLU A 36 N LEU A 14 SHEET 3 AA1 7 ALA A 202 THR A 206 -1 O ALA A 202 N ILE A 35 SHEET 4 AA1 7 SER A 155 ALA A 161 -1 N LEU A 159 O LEU A 203 SHEET 5 AA1 7 ARG A 223 ILE A 232 -1 O LEU A 226 N VAL A 160 SHEET 6 AA1 7 TYR A 114 LEU A 124 -1 N MET A 118 O THR A 229 SHEET 7 AA1 7 THR A 77 VAL A 80 -1 N ARG A 78 O GLU A 123 SHEET 1 AA2 3 VAL A 193 ARG A 194 0 SHEET 2 AA2 3 HIS A 173 VAL A 174 -1 N VAL A 174 O VAL A 193 SHEET 3 AA2 3 HIS A 211 CYS A 212 -1 O CYS A 212 N HIS A 173 LINK NE2 HIS A 134 NI NI A 401 1555 1555 2.18 LINK OD1 ASP A 136 NI NI A 401 1555 1555 2.19 LINK NE2 HIS A 211 NI NI A 401 1555 1555 2.15 LINK NI NI A 401 O3 GOL A 406 1555 1555 2.21 LINK NI NI A 401 O1 GOL A 406 1555 1555 2.42 LINK NI NI A 401 O2 GOL A 406 1555 1555 2.19 CRYST1 73.980 121.240 67.320 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013517 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014854 0.00000