PDB Short entry for 9GAF HEADER HYDROLASE/HYDROLASE INHIBITOR 15-JUN-99 9GAF TITLE PRECURSOR OF THE W11F MUTANT GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM TITLE 2 MENINGOSEPTICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (GLYCOSYLASPARAGINASE); COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GLYCOASPARAGINASE,ASPARTYLGLYCOSYLAMINASE, COMPND 5 ASPARTYLGLUCOSAMINIDASE; COMPND 6 EC: 3.5.1.26; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: AN INHIBITOR (FREE GLYCINE) IS BOUND TO EACH PRECURSOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA; SOURCE 3 ORGANISM_TAXID: 238; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PMAL FUSION PROTEIN; SOURCE 7 OTHER_DETAILS: RECOMBINANT PROTEIN KEYWDS PRECURSOR, GLYCOSYLASPARAGINASE, N-TERMINAL NUCLEOPHILE, KEYWDS 2 AUTOPROTEOLYSIS, MUTANT, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.-C.GUO,Q.XU REVDAT 6 20-SEP-23 9GAF 1 REMARK SEQADV REVDAT 5 14-MAR-18 9GAF 1 REMARK SEQADV REVDAT 4 13-JUL-11 9GAF 1 VERSN REVDAT 3 24-FEB-09 9GAF 1 VERSN REVDAT 2 01-APR-03 9GAF 1 JRNL REVDAT 1 16-JUN-00 9GAF 0 JRNL AUTH Q.XU,D.BUCKLEY,C.GUAN,H.C.GUO JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF INTRAMOLECULAR JRNL TITL 2 PROTEOLYSIS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 98 651 1999 JRNL REFN ISSN 0092-8674 JRNL PMID 10490104 JRNL DOI 10.1016/S0092-8674(00)80052-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 42126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3427 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4704 REMARK 3 BIN R VALUE (WORKING SET) : 0.2195 REMARK 3 BIN FREE R VALUE : 0.2504 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 439 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED INDIVIDUAL B F REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 6.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.HIS REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 21.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.010 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 2.60000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.95 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 5.50000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 13.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: MLPHARE, DM REMARK 200 STARTING MODEL: PDB ENTRY 2GAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 15% PEG REMARK 280 3300, 100MM TRIS, PH 7.5, 0.2M LITHIUM SULFATE, 0.1% SODIUM AZIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 465 SER A 139 REMARK 465 GLN A 140 REMARK 465 THR C 438 REMARK 465 SER C 439 REMARK 465 GLN C 440 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 144 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 150 NE2 HIS A 150 CD2 -0.070 REMARK 500 HIS C 401 NE2 HIS C 401 CD2 -0.076 REMARK 500 HIS C 450 NE2 HIS C 450 CD2 -0.067 REMARK 500 HIS C 478 NE2 HIS C 478 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 8 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 TRP A 22 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 22 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 40 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 TYR A 53 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 53 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 TYR A 53 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 102 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 VAL A 102 CG1 - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 TRP A 132 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 132 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP A 135 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 135 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 211 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 211 CD - NE - CZ ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -13.9 DEGREES REMARK 500 THR A 215 N - CA - CB ANGL. DEV. = -17.3 DEGREES REMARK 500 THR A 215 OG1 - CB - CG2 ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 279 CG1 - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU C 308 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 TRP C 322 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP C 322 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG C 340 CB - CG - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG C 340 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 340 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG C 359 CB - CG - CD ANGL. DEV. = -25.4 DEGREES REMARK 500 ARG C 359 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 359 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR C 374 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP C 432 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP C 435 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP C 435 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP C 494 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG C 511 CG - CD - NE ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG C 511 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG C 511 NE - CZ - NH1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG C 511 NE - CZ - NH2 ANGL. DEV. = -14.8 DEGREES REMARK 500 THR C 515 N - CA - CB ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG C 526 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 526 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 VAL C 579 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 -175.37 66.49 REMARK 500 ASP A 71 -158.88 -99.02 REMARK 500 ASN A 87 72.76 -116.56 REMARK 500 ALA A 189 -74.49 -110.68 REMARK 500 ILE A 197 -62.39 -121.16 REMARK 500 PHE C 311 174.98 66.84 REMARK 500 ASP C 371 -155.79 -99.09 REMARK 500 ASN C 387 74.48 -119.91 REMARK 500 ALA C 489 -77.53 -105.41 REMARK 500 ILE C 497 -58.69 -124.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 A FREE GLYCINE MOLECULE BOUND TO EACH PRECURSOR TO ACT AS REMARK 600 THE INHIBITOR OF AUTOPROTEOLYSIS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE, MUTATED (W11F) REMARK 800 REMARK 800 SITE_IDENTIFIER: INH REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: INHIBITOR/GLYCINE BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY C 596 DBREF 9GAF A 1 295 UNP Q47898 ASPG_FLAME 47 340 DBREF 9GAF C 301 595 UNP Q47898 ASPG_FLAME 47 340 SEQADV 9GAF PHE A 11 UNP Q47898 TYR 58 ENGINEERED MUTATION SEQADV 9GAF PHE C 311 UNP Q47898 TYR 58 ENGINEERED MUTATION SEQRES 1 A 295 THR THR ASN LYS PRO ILE VAL LEU SER THR PHE ASN PHE SEQRES 2 A 295 GLY LEU HIS ALA ASN VAL GLU ALA TRP LYS VAL LEU SER SEQRES 3 A 295 LYS GLY GLY LYS ALA LEU ASP ALA VAL GLU LYS GLY VAL SEQRES 4 A 295 ARG LEU VAL GLU ASP ASP PRO THR GLU ARG SER VAL GLY SEQRES 5 A 295 TYR GLY GLY ARG PRO ASP ARG ASP GLY ARG VAL THR LEU SEQRES 6 A 295 ASP ALA CYS ILE MET ASP GLU ASN TYR ASN ILE GLY SER SEQRES 7 A 295 VAL ALA CYS MET GLU HIS ILE LYS ASN PRO ILE SER VAL SEQRES 8 A 295 ALA ARG ALA VAL MET GLU LYS THR PRO HIS VAL MET LEU SEQRES 9 A 295 VAL GLY ASP GLY ALA LEU GLU PHE ALA LEU SER GLN GLY SEQRES 10 A 295 PHE LYS LYS GLU ASN LEU LEU THR ALA GLU SER GLU LYS SEQRES 11 A 295 GLU TRP LYS GLU TRP LEU LYS THR SER GLN TYR LYS PRO SEQRES 12 A 295 ILE VAL ASN ILE GLU ASN HIS ASP THR ILE GLY MET ILE SEQRES 13 A 295 ALA LEU ASP ALA GLN GLY ASN LEU SER GLY ALA CYS THR SEQRES 14 A 295 THR SER GLY MET ALA TYR LYS MET HIS GLY ARG VAL GLY SEQRES 15 A 295 ASP SER PRO ILE ILE GLY ALA GLY LEU PHE VAL ASP ASN SEQRES 16 A 295 GLU ILE GLY ALA ALA THR ALA THR GLY HIS GLY GLU GLU SEQRES 17 A 295 VAL ILE ARG THR VAL GLY THR HIS LEU VAL VAL GLU LEU SEQRES 18 A 295 MET ASN GLN GLY ARG THR PRO GLN GLN ALA CYS LYS GLU SEQRES 19 A 295 ALA VAL GLU ARG ILE VAL LYS ILE VAL ASN ARG ARG GLY SEQRES 20 A 295 LYS ASN LEU LYS ASP ILE GLN VAL GLY PHE ILE ALA LEU SEQRES 21 A 295 ASN LYS LYS GLY GLU TYR GLY ALA TYR CYS ILE GLN ASP SEQRES 22 A 295 GLY PHE ASN PHE ALA VAL HIS ASP GLN LYS GLY ASN ARG SEQRES 23 A 295 LEU GLU THR PRO GLY PHE ALA LEU LYS SEQRES 1 C 295 THR THR ASN LYS PRO ILE VAL LEU SER THR PHE ASN PHE SEQRES 2 C 295 GLY LEU HIS ALA ASN VAL GLU ALA TRP LYS VAL LEU SER SEQRES 3 C 295 LYS GLY GLY LYS ALA LEU ASP ALA VAL GLU LYS GLY VAL SEQRES 4 C 295 ARG LEU VAL GLU ASP ASP PRO THR GLU ARG SER VAL GLY SEQRES 5 C 295 TYR GLY GLY ARG PRO ASP ARG ASP GLY ARG VAL THR LEU SEQRES 6 C 295 ASP ALA CYS ILE MET ASP GLU ASN TYR ASN ILE GLY SER SEQRES 7 C 295 VAL ALA CYS MET GLU HIS ILE LYS ASN PRO ILE SER VAL SEQRES 8 C 295 ALA ARG ALA VAL MET GLU LYS THR PRO HIS VAL MET LEU SEQRES 9 C 295 VAL GLY ASP GLY ALA LEU GLU PHE ALA LEU SER GLN GLY SEQRES 10 C 295 PHE LYS LYS GLU ASN LEU LEU THR ALA GLU SER GLU LYS SEQRES 11 C 295 GLU TRP LYS GLU TRP LEU LYS THR SER GLN TYR LYS PRO SEQRES 12 C 295 ILE VAL ASN ILE GLU ASN HIS ASP THR ILE GLY MET ILE SEQRES 13 C 295 ALA LEU ASP ALA GLN GLY ASN LEU SER GLY ALA CYS THR SEQRES 14 C 295 THR SER GLY MET ALA TYR LYS MET HIS GLY ARG VAL GLY SEQRES 15 C 295 ASP SER PRO ILE ILE GLY ALA GLY LEU PHE VAL ASP ASN SEQRES 16 C 295 GLU ILE GLY ALA ALA THR ALA THR GLY HIS GLY GLU GLU SEQRES 17 C 295 VAL ILE ARG THR VAL GLY THR HIS LEU VAL VAL GLU LEU SEQRES 18 C 295 MET ASN GLN GLY ARG THR PRO GLN GLN ALA CYS LYS GLU SEQRES 19 C 295 ALA VAL GLU ARG ILE VAL LYS ILE VAL ASN ARG ARG GLY SEQRES 20 C 295 LYS ASN LEU LYS ASP ILE GLN VAL GLY PHE ILE ALA LEU SEQRES 21 C 295 ASN LYS LYS GLY GLU TYR GLY ALA TYR CYS ILE GLN ASP SEQRES 22 C 295 GLY PHE ASN PHE ALA VAL HIS ASP GLN LYS GLY ASN ARG SEQRES 23 C 295 LEU GLU THR PRO GLY PHE ALA LEU LYS HET GLY A 296 5 HET GLY C 596 5 HETNAM GLY GLYCINE FORMUL 3 GLY 2(C2 H5 N O2) FORMUL 5 HOH *226(H2 O) HELIX 1 1 ASN A 12 LYS A 27 5 16 HELIX 2 2 ALA A 31 ASP A 44 1 14 HELIX 3 3 GLY A 52 GLY A 54 5 3 HELIX 4 4 PRO A 88 LYS A 98 1 11 HELIX 5 5 GLY A 106 GLN A 116 1 11 HELIX 6 6 ALA A 126 TRP A 135 1 10 HELIX 7 7 GLY A 206 THR A 212 1 7 HELIX 8 8 GLY A 214 ASN A 223 1 10 HELIX 9 9 PRO A 228 ARG A 245 1 18 HELIX 10 10 LEU A 250 ASP A 252 5 3 HELIX 11 11 ASN C 312 LYS C 327 5 16 HELIX 12 12 ALA C 331 GLU C 343 1 13 HELIX 13 13 PRO C 388 LYS C 398 1 11 HELIX 14 14 GLY C 406 GLN C 416 1 11 HELIX 15 15 ALA C 426 LEU C 436 1 11 HELIX 16 16 GLY C 506 THR C 512 1 7 HELIX 17 17 GLY C 514 ASN C 523 1 10 HELIX 18 18 PRO C 528 ARG C 545 1 18 HELIX 19 19 LEU C 550 ASP C 552 5 3 SHEET 1 A 8 GLY A 284 GLU A 288 0 SHEET 2 A 8 PHE A 277 ASP A 281 -1 N ASP A 281 O GLY A 284 SHEET 3 A 8 ILE A 6 THR A 10 -1 N SER A 9 O ALA A 278 SHEET 4 A 8 ILE A 153 LEU A 158 -1 N LEU A 158 O ILE A 6 SHEET 5 A 8 LEU A 164 THR A 170 -1 N THR A 169 O ILE A 153 SHEET 6 A 8 ASP A 66 MET A 70 -1 N MET A 70 O GLY A 166 SHEET 7 A 8 ILE A 76 ALA A 80 -1 N VAL A 79 O ALA A 67 SHEET 8 A 8 MET A 103 VAL A 105 1 N LEU A 104 O SER A 78 SHEET 1 B 4 LEU A 191 ASP A 194 0 SHEET 2 B 4 GLY A 198 GLY A 204 -1 N ALA A 200 O PHE A 192 SHEET 3 B 4 VAL A 255 ASN A 261 -1 N LEU A 260 O ALA A 199 SHEET 4 B 4 TYR A 266 CYS A 270 -1 N TYR A 269 O PHE A 257 SHEET 1 C 7 GLY C 584 THR C 589 0 SHEET 2 C 7 ASN C 576 ASP C 581 -1 N ASP C 581 O GLY C 584 SHEET 3 C 7 ILE C 306 THR C 310 -1 N SER C 309 O ALA C 578 SHEET 4 C 7 ILE C 453 LEU C 458 -1 N LEU C 458 O ILE C 306 SHEET 5 C 7 LEU C 464 THR C 470 -1 N THR C 469 O ILE C 453 SHEET 6 C 7 ASP C 366 MET C 370 -1 N MET C 370 O GLY C 466 SHEET 7 C 7 ILE C 376 VAL C 379 -1 N VAL C 379 O ALA C 367 SHEET 1 D 4 LEU C 491 ASP C 494 0 SHEET 2 D 4 GLY C 498 GLY C 504 -1 N ALA C 500 O PHE C 492 SHEET 3 D 4 VAL C 555 ASN C 561 -1 N LEU C 560 O ALA C 499 SHEET 4 D 4 TYR C 566 CYS C 570 -1 N TYR C 569 O PHE C 557 CISPEP 1 LYS A 4 PRO A 5 0 -8.30 CISPEP 2 LYS C 304 PRO C 305 0 -6.91 SITE 1 CAT 2 THR A 152 THR C 452 SITE 1 INH 2 ARG A 180 ARG C 480 SITE 1 AC1 9 THR A 152 THR A 170 GLY A 172 ARG A 180 SITE 2 AC1 9 ASP A 183 SER A 184 GLY A 204 GLY A 206 SITE 3 AC1 9 HOH A 660 SITE 1 AC2 10 THR C 452 THR C 470 GLY C 472 ARG C 480 SITE 2 AC2 10 ASP C 483 SER C 484 GLY C 504 GLY C 506 SITE 3 AC2 10 HOH C 625 HOH C 626 CRYST1 46.300 52.800 62.400 80.80 90.50 105.10 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021598 0.005828 -0.000773 0.00000 SCALE2 0.000000 0.019617 -0.003246 0.00000 SCALE3 0.000000 0.000000 0.016244 0.00000 MTRIX1 1 -0.999970 -0.007290 -0.002450 41.18482 1 MTRIX2 1 -0.004590 0.821520 -0.570160 26.41655 1 MTRIX3 1 0.006170 -0.570130 -0.821530 83.87385 1