25.66
5.172
11.481
-0.114
A
O5'
DG
1
ATOM
A
O5'
DG
1
1
1.00
1
O
24.84
5.602
10.371
-0.958
A
C5'
DG
1
ATOM
A
C5'
DG
1
1
1.00
1
C
24.37
6.026
9.086
-0.277
A
C4'
DG
1
ATOM
A
C4'
DG
1
1
1.00
1
C
24.30
7.470
9.045
-0.223
A
O4'
DG
1
ATOM
A
O4'
DG
1
1
1.00
1
O
24.04
5.566
8.931
1.171
A
C3'
DG
1
ATOM
A
C3'
DG
1
1
1.00
1
C
23.61
5.641
7.549
1.519
A
O3'
DG
1
ATOM
A
O3'
DG
1
1
1.00
1
O
24.04
6.689
9.606
1.932
A
C2'
DG
1
ATOM
A
C2'
DG
1
1
1.00
1
C
24.06
7.906
9.162
1.132
A
C1'
DG
1
ATOM
A
C1'
DG
1
1
1.00
1
C
23.43
9.023
10.105
1.164
A
N9
DG
1
ATOM
A
N9
DG
1
1
1.00
1
N
23.43
10.356
9.794
1.303
A
C8
DG
1
ATOM
A
C8
DG
1
1
1.00
1
C
23.15
11.133
10.846
1.267
A
N7
DG
1
ATOM
A
N7
DG
1
1
1.00
1
N
22.82
10.263
11.912
1.092
A
C5
DG
1
ATOM
A
C5
DG
1
1
1.00
1
C
22.85
10.521
13.290
1.005
A
C6
DG
1
ATOM
A
C6
DG
1
1
1.00
1
C
22.89
11.610
13.878
1.027
A
O6
DG
1
ATOM
A
O6
DG
1
1
1.00
1
O
23.02
9.349
14.019
0.884
A
N1
DG
1
ATOM
A
N1
DG
1
1
1.00
1
N
23.02
8.081
13.491
0.849
A
C2
DG
1
ATOM
A
C2
DG
1
1
1.00
1
C
23.09
7.070
14.372
0.725
A
N2
DG
1
ATOM
A
N2
DG
1
1
1.00
1
N
22.59
7.824
12.204
0.927
A
N3
DG
1
ATOM
A
N3
DG
1
1
1.00
1
N
23.03
8.954
11.475
1.043
A
C4
DG
1
ATOM
A
C4
DG
1
1
1.00
1
C
15.06
5.696
11.801
4.833
A
N1
5CM
2
HETATM
A
N1
5CM
1
2
1.00
1
N
14.96
5.990
13.131
4.552
A
C2
5CM
2
HETATM
A
C2
5CM
1
2
1.00
1
C
14.36
7.280
13.505
4.381
A
N3
5CM
2
HETATM
A
N3
5CM
1
2
1.00
1
N
14.57
8.252
12.601
4.479
A
C4
5CM
2
HETATM
A
C4
5CM
1
2
1.00
1
C
14.81
7.979
11.229
4.762
A
C5
5CM
2
HETATM
A
C5
5CM
1
2
1.00
1
C
14.65
9.101
10.245
4.847
A
C5A
5CM
2
HETATM
A
C5A
5CM
1
2
1.00
1
C
15.14
6.700
10.880
4.936
A
C6
5CM
2
HETATM
A
C6
5CM
1
2
1.00
1
C
14.42
5.060
13.942
4.460
A
O2
5CM
2
HETATM
A
O2
5CM
1
2
1.00
1
O
14.82
9.497
13.033
4.301
A
N4
5CM
2
HETATM
A
N4
5CM
1
2
1.00
1
N
15.89
4.289
11.408
5.004
A
C1'
5CM
2
HETATM
A
C1'
5CM
1
2
1.00
1
C
15.96
3.550
11.206
3.693
A
C2'
5CM
2
HETATM
A
C2'
5CM
1
2
1.00
1
C
16.40
2.428
10.286
4.134
A
C3'
5CM
2
HETATM
A
C3'
5CM
1
2
1.00
1
C
17.04
3.071
9.430
5.234
A
C4'
5CM
2
HETATM
A
C4'
5CM
1
2
1.00
1
C
16.52
4.258
10.142
5.645
A
O4'
5CM
2
HETATM
A
O4'
5CM
1
2
1.00
1
O
16.18
1.449
11.136
4.745
A
O3'
5CM
2
HETATM
A
O3'
5CM
1
2
1.00
1
O
18.76
3.517
8.074
4.746
A
C5'
5CM
2
HETATM
A
C5'
5CM
1
2
1.00
1
C
21.38
4.231
8.238
3.519
A
O5'
5CM
2
HETATM
A
O5'
5CM
1
2
1.00
1
O
23.33
4.729
6.977
2.700
A
P
5CM
2
HETATM
A
P
5CM
1
2
1.00
1
P
23.40
5.512
6.093
3.582
A
OP1
5CM
2
HETATM
A
OP1
5CM
1
2
1.00
1
O
23.95
3.560
6.453
1.958
A
OP2
5CM
2
HETATM
A
OP2
5CM
1
2
1.00
1
O
15.30
-0.115
10.800
4.609
A
P
DG
3
ATOM
A
P
DG
1
3
1.00
1
P
14.51
-0.438
10.404
3.214
A
OP1
DG
3
ATOM
A
OP1
DG
1
3
1.00
1
O
15.32
-0.726
12.006
5.211
A
OP2
DG
3
ATOM
A
OP2
DG
1
3
1.00
1
O
14.18
-0.331
9.574
5.586
A
O5'
DG
3
ATOM
A
O5'
DG
1
3
1.00
1
O
13.73
-0.167
9.732
6.996
A
C5'
DG
3
ATOM
A
C5'
DG
1
3
1.00
1
C
13.34
-0.144
8.378
7.667
A
C4'
DG
3
ATOM
A
C4'
DG
1
3
1.00
1
C
12.54
0.962
7.568
7.210
A
O4'
DG
3
ATOM
A
O4'
DG
1
3
1.00
1
O
12.67
0.014
8.500
9.177
A
C3'
DG
3
ATOM
A
C3'
DG
1
3
1.00
1
C
12.59
-1.323
8.522
9.697
A
O3'
DG
3
ATOM
A
O3'
DG
1
3
1.00
1
O
12.60
0.764
7.231
9.540
A
C2'
DG
3
ATOM
A
C2'
DG
1
3
1.00
1
C
12.53
1.538
6.856
8.282
A
C1'
DG
3
ATOM
A
C1'
DG
1
3
1.00
1
C
13.12
2.967
7.153
8.288
A
N9
DG
3
ATOM
A
N9
DG
1
3
1.00
1
N
13.79
3.974
6.223
8.194
A
C8
DG
3
ATOM
A
C8
DG
1
3
1.00
1
C
13.50
5.168
6.751
8.223
A
N7
DG
3
ATOM
A
N7
DG
1
3
1.00
1
N
13.39
4.942
8.115
8.342
A
C5
DG
3
ATOM
A
C5
DG
1
3
1.00
1
C
13.44
5.873
9.207
8.395
A
C6
DG
3
ATOM
A
C6
DG
1
3
1.00
1
C
13.37
7.124
9.169
8.382
A
O6
DG
3
ATOM
A
O6
DG
1
3
1.00
1
O
12.43
5.215
10.431
8.471
A
N1
DG
3
ATOM
A
N1
DG
1
3
1.00
1
N
12.83
3.853
10.598
8.504
A
C2
DG
3
ATOM
A
C2
DG
1
3
1.00
1
C
11.66
3.437
11.870
8.587
A
N2
DG
3
ATOM
A
N2
DG
1
3
1.00
1
N
12.35
2.978
9.596
8.463
A
N3
DG
3
ATOM
A
N3
DG
1
3
1.00
1
N
12.94
3.587
8.389
8.379
A
C4
DG
3
ATOM
A
C4
DG
1
3
1.00
1
C
12.61
-1.598
8.790
11.255
A
P
DC
4
ATOM
A
P
DC
1
4
1.00
1
P
13.69
-0.790
7.996
12.178
A
OP1
DC
4
ATOM
A
OP1
DC
1
4
1.00
1
O
14.06
-3.069
8.696
11.362
A
OP2
DC
4
ATOM
A
OP2
DC
1
4
1.00
1
O
12.55
-1.254
10.329
11.447
A
O5'
DC
4
ATOM
A
O5'
DC
1
4
1.00
1
O
12.40
-1.469
10.970
12.723
A
C5'
DC
4
ATOM
A
C5'
DC
1
4
1.00
1
C
12.90
-0.579
12.185
12.851
A
C4'
DC
4
ATOM
A
C4'
DC
1
4
1.00
1
C
12.67
0.750
11.717
13.178
A
O4'
DC
4
ATOM
A
O4'
DC
1
4
1.00
1
O
13.78
-0.437
12.996
11.556
A
C3'
DC
4
ATOM
A
C3'
DC
1
4
1.00
1
C
15.31
-0.295
14.386
11.885
A
O3'
DC
4
ATOM
A
O3'
DC
1
4
1.00
1
O
13.37
0.885
12.514
10.985
A
C2'
DC
4
ATOM
A
C2'
DC
1
4
1.00
1
C
12.64
1.673
12.243
12.251
A
C1'
DC
4
ATOM
A
C1'
DC
1
4
1.00
1
C
12.73
2.769
11.285
12.117
A
N1
DC
4
ATOM
A
N1
DC
1
4
1.00
1
N
12.33
4.077
11.786
12.006
A
C2
DC
4
ATOM
A
C2
DC
1
4
1.00
1
C
12.24
4.245
13.008
11.967
A
O2
DC
4
ATOM
A
O2
DC
1
4
1.00
1
O
11.89
5.112
10.929
11.934
A
N3
DC
4
ATOM
A
N3
DC
1
4
1.00
1
N
12.41
4.889
9.619
11.941
A
C4
DC
4
ATOM
A
C4
DC
1
4
1.00
1
C
12.28
5.964
8.811
11.849
A
N4
DC
4
ATOM
A
N4
DC
1
4
1.00
1
N
12.59
3.558
9.072
12.034
A
C5
DC
4
ATOM
A
C5
DC
1
4
1.00
1
C
12.66
2.541
9.936
12.116
A
C6
DC
4
ATOM
A
C6
DC
1
4
1.00
1
C
16.13
-1.557
15.376
11.779
A
P
DG
5
ATOM
A
P
DG
1
5
1.00
1
P
17.10
-2.267
15.040
10.523
A
OP1
DG
5
ATOM
A
OP1
DG
1
5
1.00
1
O
16.70
-1.086
16.751
12.007
A
OP2
DG
5
ATOM
A
OP2
DG
1
5
1.00
1
O
15.48
-2.447
14.996
13.038
A
O5'
DG
5
ATOM
A
O5'
DG
1
5
1.00
1
O
14.37
-1.991
15.265
14.367
A
C5'
DG
5
ATOM
A
C5'
DG
1
5
1.00
1
C
14.18
-2.877
14.542
15.352
A
C4'
DG
5
ATOM
A
C4'
DG
1
5
1.00
1
C
13.54
-2.930
13.130
15.076
A
O4'
DG
5
ATOM
A
O4'
DG
1
5
1.00
1
O
14.66
-2.475
14.682
16.815
A
C3'
DG
5
ATOM
A
C3'
DG
1
5
1.00
1
C
16.30
-3.361
15.648
17.382
A
O3'
DG
5
ATOM
A
O3'
DG
1
5
1.00
1
O
13.83
-2.838
13.344
17.434
A
C2'
DG
5
ATOM
A
C2'
DG
1
5
1.00
1
C
13.42
-3.049
12.385
16.278
A
C1'
DG
5
ATOM
A
C1'
DG
1
5
1.00
1
C
13.73
-2.079
11.302
16.218
A
N9
DG
5
ATOM
A
N9
DG
1
5
1.00
1
N
13.80
-2.370
9.962
16.190
A
C8
DG
5
ATOM
A
C8
DG
1
5
1.00
1
C
13.89
-1.310
9.208
16.068
A
N7
DG
5
ATOM
A
N7
DG
1
5
1.00
1
N
13.58
-0.247
10.101
16.037
A
C5
DG
5
ATOM
A
C5
DG
1
5
1.00
1
C
13.32
1.143
9.866
15.869
A
C6
DG
5
ATOM
A
C6
DG
1
5
1.00
1
C
13.70
1.733
8.791
15.742
A
O6
DG
5
ATOM
A
O6
DG
1
5
1.00
1
O
12.79
1.860
11.055
15.843
A
N1
DG
5
ATOM
A
N1
DG
1
5
1.00
1
N
12.50
1.319
12.301
15.953
A
C2
DG
5
ATOM
A
C2
DG
1
5
1.00
1
C
11.97
2.187
13.289
15.900
A
N2
DG
5
ATOM
A
N2
DG
1
5
1.00
1
N
12.66
0.026
12.548
16.105
A
N3
DG
5
ATOM
A
N3
DG
1
5
1.00
1
N
13.41
-0.698
11.404
16.138
A
C4
DG
5
ATOM
A
C4
DG
1
5
1.00
1
C
17.96
-2.797
16.911
18.179
A
P
DC
6
ATOM
A
P
DC
1
6
1.00
1
P
18.79
-3.824
17.409
19.103
A
OP1
DC
6
ATOM
A
OP1
DC
1
6
1.00
1
O
18.78
-2.220
17.836
17.161
A
OP2
DC
6
ATOM
A
OP2
DC
1
6
1.00
1
O
16.79
-1.605
16.373
19.072
A
O5'
DC
6
ATOM
A
O5'
DC
1
6
1.00
1
O
15.50
-1.092
17.200
20.125
A
C5'
DC
6
ATOM
A
C5'
DC
1
6
1.00
1
C
14.48
0.407
17.039
20.214
A
C4'
DC
6
ATOM
A
C4'
DC
1
6
1.00
1
C
13.85
0.598
15.665
20.589
A
O4'
DC
6
ATOM
A
O4'
DC
1
6
1.00
1
O
14.76
1.124
17.225
18.871
A
C3'
DC
6
ATOM
A
C3'
DC
1
6
1.00
1
C
15.96
2.332
17.959
19.088
A
O3'
DC
6
ATOM
A
O3'
DC
1
6
1.00
1
O
13.84
1.483
15.817
18.442
A
C2'
DC
6
ATOM
A
C2'
DC
1
6
1.00
1
C
13.19
1.591
15.101
19.770
A
C1'
DC
6
ATOM
A
C1'
DC
1
6
1.00
1
C
12.72
1.331
13.670
19.683
A
N1
DC
6
ATOM
A
N1
DC
1
6
1.00
1
N
12.07
2.419
12.822
19.510
A
C2
DC
6
ATOM
A
C2
DC
1
6
1.00
1
C
12.15
3.552
13.316
19.481
A
O2
DC
6
ATOM
A
O2
DC
1
6
1.00
1
O
12.31
2.204
11.497
19.386
A
N3
DC
6
ATOM
A
N3
DC
1
6
1.00
1
N
11.90
0.961
11.015
19.447
A
C4
DC
6
ATOM
A
C4
DC
1
6
1.00
1
C
12.44
0.803
9.701
19.327
A
N4
DC
6
ATOM
A
N4
DC
1
6
1.00
1
N
11.68
-0.170
11.862
19.640
A
C5
DC
6
ATOM
A
C5
DC
1
6
1.00
1
C
12.15
0.060
13.168
19.753
A
C6
DC
6
ATOM
A
C6
DC
1
6
1.00
1
C
16.99
2.403
19.517
18.729
A
P
DG
7
ATOM
A
P
DG
1
7
1.00
1
P
16.64
2.067
19.700
17.310
A
OP1
DG
7
ATOM
A
OP1
DG
1
7
1.00
1
O
17.45
3.734
19.944
19.228
A
OP2
DG
7
ATOM
A
OP2
DG
1
7
1.00
1
O
16.42
1.299
20.171
19.675
A
O5'
DG
7
ATOM
A
O5'
DG
1
7
1.00
1
O
16.13
1.622
20.573
21.019
A
C5'
DG
7
ATOM
A
C5'
DG
1
7
1.00
1
C
15.59
0.403
21.136
21.710
A
C4'
DG
7
ATOM
A
C4'
DG
1
7
1.00
1
C
15.55
-0.602
20.097
21.784
A
O4'
DG
7
ATOM
A
O4'
DG
1
7
1.00
1
O
15.98
0.686
21.563
23.151
A
C3'
DG
7
ATOM
A
C3'
DG
1
7
1.00
1
C
16.88
-0.050
22.749
23.425
A
O3'
DG
7
ATOM
A
O3'
DG
1
7
1.00
1
O
15.75
0.139
20.424
23.991
A
C2'
DG
7
ATOM
A
C2'
DG
1
7
1.00
1
C
15.72
-0.993
19.882
23.133
A
C1'
DG
7
ATOM
A
C1'
DG
1
7
1.00
1
C
15.59
-1.331
18.464
23.291
A
N9
DG
7
ATOM
A
N9
DG
1
7
1.00
1
N
15.62
-2.604
17.948
23.369
A
C8
DG
7
ATOM
A
C8
DG
1
7
1.00
1
C
15.81
-2.633
16.648
23.477
A
N7
DG
7
ATOM
A
N7
DG
1
7
1.00
1
N
15.66
-1.295
16.273
23.479
A
C5
DG
7
ATOM
A
C5
DG
1
7
1.00
1
C
15.50
-0.703
14.984
23.550
A
C6
DG
7
ATOM
A
C6
DG
1
7
1.00
1
C
15.46
-1.262
13.876
23.601
A
O6
DG
7
ATOM
A
O6
DG
1
7
1.00
1
O
14.65
0.685
15.064
23.533
A
N1
DG
7
ATOM
A
N1
DG
1
7
1.00
1
N
14.80
1.415
16.210
23.420
A
C2
DG
7
ATOM
A
C2
DG
1
7
1.00
1
C
14.63
2.752
16.042
23.403
A
N2
DG
7
ATOM
A
N2
DG
1
7
1.00
1
N
14.77
0.888
17.421
23.331
A
N3
DG
7
ATOM
A
N3
DG
1
7
1.00
1
N
15.68
-0.470
17.382
23.374
A
C4
DG
7
ATOM
A
C4
DG
1
7
1.00
1
C
27.08
6.342
2.112
26.928
B
O5'
DG
8
ATOM
B
O5'
DG
1
1
1.00
1
O
26.82
6.426
3.408
27.568
B
C5'
DG
8
ATOM
B
C5'
DG
1
1
1.00
1
C
26.48
6.705
4.569
26.636
B
C4'
DG
8
ATOM
B
C4'
DG
1
1
1.00
1
C
26.02
8.129
4.734
26.487
B
O4'
DG
8
ATOM
B
O4'
DG
1
1
1.00
1
O
26.24
6.205
4.355
25.216
B
C3'
DG
8
ATOM
B
C3'
DG
1
1
1.00
1
C
26.90
6.461
5.581
24.537
B
O3'
DG
8
ATOM
B
O3'
DG
1
1
1.00
1
O
25.62
7.308
3.472
24.685
B
C2'
DG
8
ATOM
B
C2'
DG
1
1
1.00
1
C
24.92
8.476
4.308
25.178
B
C1'
DG
8
ATOM
B
C1'
DG
1
1
1.00
1
C
23.99
9.763
3.643
25.248
B
N9
DG
8
ATOM
B
N9
DG
1
1
1.00
1
N
23.41
10.057
2.303
25.198
B
C8
DG
8
ATOM
B
C8
DG
1
1
1.00
1
C
23.28
11.340
2.071
25.250
B
N7
DG
8
ATOM
B
N7
DG
1
1
1.00
1
N
23.20
11.910
3.332
25.351
B
C5
DG
8
ATOM
B
C5
DG
1
1
1.00
1
C
22.95
13.261
3.728
25.438
B
C6
DG
8
ATOM
B
C6
DG
1
1
1.00
1
C
23.51
14.258
3.010
25.435
B
O6
DG
8
ATOM
B
O6
DG
1
1
1.00
1
O
22.83
13.389
5.113
25.529
B
N1
DG
8
ATOM
B
N1
DG
1
1
1.00
1
N
23.17
12.330
5.997
25.536
B
C2
DG
8
ATOM
B
C2
DG
1
1
1.00
1
C
23.62
12.591
7.298
25.634
B
N2
DG
8
ATOM
B
N2
DG
1
1
1.00
1
N
23.11
11.073
5.633
25.451
B
N3
DG
8
ATOM
B
N3
DG
1
1
1.00
1
N
23.38
10.941
4.302
25.361
B
C4
DG
8
ATOM
B
C4
DG
1
1
1.00
1
C
14.86
3.797
11.265
22.735
B
N1
5CM
9
HETATM
B
N1
5CM
1
2
1.00
1
N
14.00
3.105
12.468
22.871
B
C2
5CM
9
HETATM
B
C2
5CM
1
2
1.00
1
C
13.98
1.769
12.433
23.022
B
N3
5CM
9
HETATM
B
N3
5CM
1
2
1.00
1
N
14.25
1.127
11.272
23.043
B
C4
5CM
9
HETATM
B
C4
5CM
1
2
1.00
1
C
14.70
1.817
10.026
22.927
B
C5
5CM
9
HETATM
B
C5
5CM
1
2
1.00
1
C
15.11
1.065
8.731
22.985
B
C5A
5CM
9
HETATM
B
C5A
5CM
1
2
1.00
1
C
14.84
3.137
10.076
22.772
B
C6
5CM
9
HETATM
B
C6
5CM
1
2
1.00
1
C
12.94
3.716
13.537
22.854
B
O2
5CM
9
HETATM
B
O2
5CM
1
2
1.00
1
O
14.53
-0.205
11.322
23.167
B
N4
5CM
9
HETATM
B
N4
5CM
1
2
1.00
1
N
16.46
5.243
11.262
22.554
B
C1'
5CM
9
HETATM
B
C1'
5CM
1
2
1.00
1
C
17.44
5.958
10.947
23.854
B
C2'
5CM
9
HETATM
B
C2'
5CM
1
2
1.00
1
C
18.03
7.238
10.325
23.345
B
C3'
5CM
9
HETATM
B
C3'
5CM
1
2
1.00
1
C
19.11
6.750
9.521
22.140
B
C4'
5CM
9
HETATM
B
C4'
5CM
1
2
1.00
1
C
17.60
5.556
10.187
21.685
B
O4'
5CM
9
HETATM
B
O4'
5CM
1
2
1.00
1
O
18.03
8.065
11.414
22.909
B
O3'
5CM
9
HETATM
B
O3'
5CM
1
2
1.00
1
O
21.51
6.419
8.080
22.453
B
C5'
5CM
9
HETATM
B
C5'
5CM
1
2
1.00
1
C
25.07
6.045
7.962
23.833
B
O5'
5CM
9
HETATM
B
O5'
5CM
1
2
1.00
1
O
27.25
5.297
6.661
24.373
B
P
5CM
9
HETATM
B
P
5CM
1
2
1.00
1
P
27.28
4.826
6.974
25.740
B
OP1
5CM
9
HETATM
B
OP1
5CM
1
2
1.00
1
O
27.51
4.361
6.119
23.327
B
OP2
5CM
9
HETATM
B
OP2
5CM
1
2
1.00
1
O
17.32
9.671
11.287
22.990
B
P
DG
10
ATOM
B
P
DG
1
3
1.00
1
P
17.88
9.996
10.738
24.321
B
OP1
DG
10
ATOM
B
OP1
DG
1
3
1.00
1
O
17.27
10.164
12.628
22.574
B
OP2
DG
10
ATOM
B
OP2
DG
1
3
1.00
1
O
16.31
10.049
10.199
21.903
B
O5'
DG
10
ATOM
B
O5'
DG
1
3
1.00
1
O
15.31
10.047
10.560
20.533
B
C5'
DG
10
ATOM
B
C5'
DG
1
3
1.00
1
C
14.30
10.394
9.359
19.692
B
C4'
DG
10
ATOM
B
C4'
DG
1
3
1.00
1
C
13.83
9.470
8.304
19.994
B
O4'
DG
10
ATOM
B
O4'
DG
1
3
1.00
1
O
14.18
10.244
9.649
18.206
B
C3'
DG
10
ATOM
B
C3'
DG
1
3
1.00
1
C
14.65
11.572
10.023
17.797
B
O3'
DG
10
ATOM
B
O3'
DG
1
3
1.00
1
O
13.99
9.812
8.307
17.649
B
C2'
DG
10
ATOM
B
C2'
DG
1
3
1.00
1
C
14.02
9.153
7.586
18.819
B
C1'
DG
10
ATOM
B
C1'
DG
1
3
1.00
1
C
14.46
7.701
7.459
18.769
B
N9
DG
10
ATOM
B
N9
DG
1
3
1.00
1
N
15.00
6.997
6.279
18.826
B
C8
DG
10
ATOM
B
C8
DG
1
3
1.00
1
C
15.21
5.701
6.449
18.806
B
N7
DG
10
ATOM
B
N7
DG
1
3
1.00
1
N
14.55
5.534
7.827
18.726
B
C5
DG
10
ATOM
B
C5
DG
1
3
1.00
1
C
14.48
4.350
8.611
18.846
B
C6
DG
10
ATOM
B
C6
DG
1
3
1.00
1
C
14.68
3.175
8.221
18.925
B
O6
DG
10
ATOM
B
O6
DG
1
3
1.00
1
O
13.27
4.639
9.971
18.883
B
N1
DG
10
ATOM
B
N1
DG
1
3
1.00
1
N
12.89
5.899
10.511
18.828
B
C2
DG
10
ATOM
B
C2
DG
1
3
1.00
1
C
11.55
5.962
11.827
18.887
B
N2
DG
10
ATOM
B
N2
DG
1
3
1.00
1
N
12.97
7.009
9.802
18.727
B
N3
DG
10
ATOM
B
N3
DG
1
3
1.00
1
N
14.24
6.760
8.472
18.685
B
C4
DG
10
ATOM
B
C4
DG
1
3
1.00
1
C
15.73
11.864
10.570
16.314
B
P
DC
11
ATOM
B
P
DC
1
4
1.00
1
P
16.05
11.460
9.619
15.241
B
OP1
DC
11
ATOM
B
OP1
DC
1
4
1.00
1
O
16.42
13.290
10.992
16.416
B
OP2
DC
11
ATOM
B
OP2
DC
1
4
1.00
1
O
14.19
11.010
11.901
16.143
B
O5'
DC
11
ATOM
B
O5'
DC
1
4
1.00
1
O
13.32
11.087
12.703
14.942
B
C5'
DC
11
ATOM
B
C5'
DC
1
4
1.00
1
C
12.89
9.902
13.644
14.867
B
C4'
DC
11
ATOM
B
C4'
DC
1
4
1.00
1
C
12.00
8.760
12.903
14.386
B
O4'
DC
11
ATOM
B
O4'
DC
1
4
1.00
1
O
13.27
9.481
14.239
16.216
B
C3'
DC
11
ATOM
B
C3'
DC
1
4
1.00
1
C
15.36
8.962
15.571
16.054
B
O3'
DC
11
ATOM
B
O3'
DC
1
4
1.00
1
O
12.31
8.336
13.344
16.638
B
C2'
DC
11
ATOM
B
C2'
DC
1
4
1.00
1
C
12.04
7.689
13.048
15.301
B
C1'
DC
11
ATOM
B
C1'
DC
1
4
1.00
1
C
11.35
6.895
11.815
15.283
B
N1
DC
11
ATOM
B
N1
DC
1
4
1.00
1
N
11.01
5.501
11.910
15.455
B
C2
DC
11
ATOM
B
C2
DC
1
4
1.00
1
C
10.71
4.965
13.026
15.570
B
O2
DC
11
ATOM
B
O2
DC
1
4
1.00
1
O
10.69
4.778
10.792
15.501
B
N3
DC
11
ATOM
B
N3
DC
1
4
1.00
1
N
11.37
5.367
9.610
15.391
B
C4
DC
11
ATOM
B
C4
DC
1
4
1.00
1
C
11.89
4.592
8.526
15.507
B
N4
DC
11
ATOM
B
N4
DC
1
4
1.00
1
N
10.81
6.774
9.478
15.175
B
C5
DC
11
ATOM
B
C5
DC
1
4
1.00
1
C
11.06
7.490
10.595
15.126
B
C6
DC
11
ATOM
B
C6
DC
1
4
1.00
1
C
16.35
9.932
16.849
16.182
B
P
DG
12
ATOM
B
P
DG
1
5
1.00
1
P
17.00
10.738
16.711
17.416
B
OP1
DG
12
ATOM
B
OP1
DG
1
5
1.00
1
O
17.38
9.079
18.048
15.990
B
OP2
DG
12
ATOM
B
OP2
DG
1
5
1.00
1
O
15.89
10.859
16.752
14.892
B
O5'
DG
12
ATOM
B
O5'
DG
1
5
1.00
1
O
15.20
10.338
17.050
13.590
B
C5'
DG
12
ATOM
B
C5'
DG
1
5
1.00
1
C
14.77
11.381
16.762
12.535
B
C4'
DG
12
ATOM
B
C4'
DG
1
5
1.00
1
C
14.41
11.819
15.397
12.635
B
O4'
DG
12
ATOM
B
O4'
DG
1
5
1.00
1
O
14.98
10.786
16.897
11.147
B
C3'
DG
12
ATOM
B
C3'
DG
1
5
1.00
1
C
16.77
11.061
18.222
10.687
B
O3'
DG
12
ATOM
B
O3'
DG
1
5
1.00
1
O
14.52
11.535
15.861
10.332
B
C2'
DG
12
ATOM
B
C2'
DG
1
5
1.00
1
C
13.73
12.060
14.857
11.347
B
C1'
DG
12
ATOM
B
C1'
DG
1
5
1.00
1
C
13.23
11.463
13.530
11.313
B
N9
DG
12
ATOM
B
N9
DG
1
5
1.00
1
N
13.34
12.131
12.333
11.272
B
C8
DG
12
ATOM
B
C8
DG
1
5
1.00
1
C
12.91
11.341
11.298
11.310
B
N7
DG
12
ATOM
B
N7
DG
1
5
1.00
1
N
13.25
10.062
11.845
11.363
B
C5
DG
12
ATOM
B
C5
DG
1
5
1.00
1
C
12.56
8.784
11.217
11.474
B
C6
DG
12
ATOM
B
C6
DG
1
5
1.00
1
C
12.62
8.516
10.019
11.524
B
O6
DG
12
ATOM
B
O6
DG
1
5
1.00
1
O
12.09
7.761
12.149
11.536
B
N1
DG
12
ATOM
B
N1
DG
1
5
1.00
1
N
12.19
7.930
13.510
11.513
B
C2
DG
12
ATOM
B
C2
DG
1
5
1.00
1
C
11.17
6.824
14.250
11.566
B
N2
DG
12
ATOM
B
N2
DG
1
5
1.00
1
N
12.32
9.107
14.110
11.436
B
N3
DG
12
ATOM
B
N3
DG
1
5
1.00
1
N
13.22
10.121
13.225
11.356
B
C4
DG
12
ATOM
B
C4
DG
1
5
1.00
1
C
18.16
9.847
19.179
10.240
B
P
DC
13
ATOM
B
P
DC
1
6
1.00
1
P
18.91
10.458
20.478
9.865
B
OP1
DC
13
ATOM
B
OP1
DC
1
6
1.00
1
O
17.37
8.814
19.125
11.321
B
OP2
DC
13
ATOM
B
OP2
DC
1
6
1.00
1
O
17.03
9.357
18.473
8.895
B
O5'
DC
13
ATOM
B
O5'
DC
1
6
1.00
1
O
16.02
8.710
19.202
7.831
B
C5'
DC
13
ATOM
B
C5'
DC
1
6
1.00
1
C
15.18
7.372
18.575
7.514
B
C4'
DC
13
ATOM
B
C4'
DC
1
6
1.00
1
C
14.69
7.542
17.214
7.054
B
O4'
DC
13
ATOM
B
O4'
DC
1
6
1.00
1
O
15.28
6.458
18.500
8.740
B
C3'
DC
13
ATOM
B
C3'
DC
1
6
1.00
1
C
15.58
5.128
18.895
8.375
B
O3'
DC
13
ATOM
B
O3'
DC
1
6
1.00
1
O
14.51
6.483
17.035
9.123
B
C2'
DC
13
ATOM
B
C2'
DC
1
6
1.00
1
C
14.06
6.668
16.363
7.776
B
C1'
DC
13
ATOM
B
C1'
DC
1
6
1.00
1
C
13.00
7.277
15.022
7.851
B
N1
DC
13
ATOM
B
N1
DC
1
6
1.00
1
N
12.40
6.446
13.913
7.996
B
C2
DC
13
ATOM
B
C2
DC
1
6
1.00
1
C
12.07
5.207
14.066
8.029
B
O2
DC
13
ATOM
B
O2
DC
1
6
1.00
1
O
12.07
6.991
12.691
8.091
B
N3
DC
13
ATOM
B
N3
DC
1
6
1.00
1
N
11.88
8.301
12.542
8.035
B
C4
DC
13
ATOM
B
C4
DC
1
6
1.00
1
C
11.77
8.767
11.313
8.150
B
N4
DC
13
ATOM
B
N4
DC
1
6
1.00
1
N
12.20
9.180
13.648
7.865
B
C5
DC
13
ATOM
B
C5
DC
1
6
1.00
1
C
12.51
8.629
14.859
7.786
B
C6
DC
13
ATOM
B
C6
DC
1
6
1.00
1
C
16.46
4.640
20.393
8.672
B
P
DG
14
ATOM
B
P
DG
1
7
1.00
1
P
15.90
4.927
20.707
10.104
B
OP1
DG
14
ATOM
B
OP1
DG
1
7
1.00
1
O
17.22
3.257
20.549
8.124
B
OP2
DG
14
ATOM
B
OP2
DG
1
7
1.00
1
O
15.99
5.572
21.308
7.761
B
O5'
DG
14
ATOM
B
O5'
DG
1
7
1.00
1
O
15.53
5.304
21.501
6.370
B
C5'
DG
14
ATOM
B
C5'
DG
1
7
1.00
1
C
14.76
6.376
22.370
5.750
B
C4'
DG
14
ATOM
B
C4'
DG
1
7
1.00
1
C
14.24
7.621
21.643
5.715
B
O4'
DG
14
ATOM
B
O4'
DG
1
7
1.00
1
O
14.89
6.091
22.774
4.305
B
C3'
DG
14
ATOM
B
C3'
DG
1
7
1.00
1
C
15.26
6.618
24.089
4.206
B
O3'
DG
14
ATOM
B
O3'
DG
1
7
1.00
1
O
14.22
6.887
21.765
3.504
B
C2'
DG
14
ATOM
B
C2'
DG
1
7
1.00
1
C
13.77
8.105
21.595
4.385
B
C1'
DG
14
ATOM
B
C1'
DG
1
7
1.00
1
C
13.16
8.850
20.356
4.244
B
N9
DG
14
ATOM
B
N9
DG
1
7
1.00
1
N
13.27
10.217
20.235
4.224
B
C8
DG
14
ATOM
B
C8
DG
1
7
1.00
1
C
13.52
10.622
18.996
4.199
B
N7
DG
14
ATOM
B
N7
DG
1
7
1.00
1
N
13.71
9.447
18.250
4.174
B
C5
DG
14
ATOM
B
C5
DG
1
7
1.00
1
C
14.17
9.237
16.828
4.208
B
C6
DG
14
ATOM
B
C6
DG
1
7
1.00
1
C
13.83
10.068
15.913
4.267
B
O6
DG
14
ATOM
B
O6
DG
1
7
1.00
1
O
14.07
7.882
16.517
4.195
B
N1
DG
14
ATOM
B
N1
DG
1
7
1.00
1
N
13.88
6.862
17.439
4.181
B
C2
DG
14
ATOM
B
C2
DG
1
7
1.00
1
C
13.71
5.617
16.935
4.163
B
N2
DG
14
ATOM
B
N2
DG
1
7
1.00
1
N
12.87
7.037
18.745
4.181
B
N3
DG
14
ATOM
B
N3
DG
1
7
1.00
1
N
13.69
8.344
19.081
4.174
B
C4
DG
14
ATOM
B
C4
DG
1
7
1.00
1
C
20.97
-6.601
7.376
12.991
A
MG
MG
16
HETATM
C
MG
MG
2
1.00
1
MG
17.35
-0.166
5.468
15.026
A
CO
NCO
15
HETATM
D
CO
NCO
3
0.90
1
CO
17.14
0.910
6.704
13.975
A
N1
NCO
15
HETATM
D
N1
NCO
3
0.90
1
N
16.83
-1.851
6.767
14.343
A
N2
NCO
15
HETATM
D
N2
NCO
3
0.90
1
N
17.14
-1.224
4.112
15.925
A
N3
NCO
15
HETATM
D
N3
NCO
3
0.90
1
N
17.33
1.518
4.318
15.785
A
N4
NCO
15
HETATM
D
N4
NCO
3
0.90
1
N
17.00
-0.470
4.914
13.368
A
N5
NCO
15
HETATM
D
N5
NCO
3
0.90
1
N
16.39
-0.040
6.280
16.659
A
N6
NCO
15
HETATM
D
N6
NCO
3
0.90
1
N
41.86
12.293
12.132
4.459
A
O
HOH
17
HETATM
E
O
HOH
4
1.00
1
O
23.31
-1.785
8.571
19.642
A
O
HOH
21
HETATM
E
O
HOH
4
1.00
1
O
37.55
5.502
15.692
20.414
A
O
HOH
23
HETATM
E
O
HOH
4
1.00
1
O
19.00
3.129
15.346
10.206
A
O
HOH
25
HETATM
E
O
HOH
4
1.00
1
O
45.21
0.262
12.065
0.880
A
O
HOH
28
HETATM
E
O
HOH
4
1.00
1
O
19.44
-3.022
13.549
21.459
A
O
HOH
29
HETATM
E
O
HOH
4
1.00
1
O
19.77
1.237
16.254
15.073
A
O
HOH
31
HETATM
E
O
HOH
4
1.00
1
O
34.75
12.819
15.430
2.715
A
O
HOH
32
HETATM
E
O
HOH
4
1.00
1
O
19.48
-5.377
11.179
14.119
A
O
HOH
37
HETATM
E
O
HOH
4
1.00
1
O
30.65
-0.552
18.529
15.516
A
O
HOH
38
HETATM
E
O
HOH
4
1.00
1
O
24.99
4.422
19.331
15.798
A
O
HOH
39
HETATM
E
O
HOH
4
1.00
1
O
37.07
2.371
8.054
-0.031
A
O
HOH
40
HETATM
E
O
HOH
4
1.00
1
O
24.47
3.172
5.994
16.926
A
O
HOH
44
HETATM
E
O
HOH
4
1.00
1
O
26.93
-5.166
10.721
11.162
A
O
HOH
46
HETATM
E
O
HOH
4
1.00
1
O
44.14
13.500
10.328
0.563
A
O
HOH
48
HETATM
E
O
HOH
4
1.00
1
O
31.38
-0.997
14.355
8.217
A
O
HOH
50
HETATM
E
O
HOH
4
1.00
1
O
50.75
8.498
6.892
3.288
A
O
HOH
52
HETATM
E
O
HOH
4
1.00
1
O
34.13
-5.553
13.460
12.594
A
O
HOH
53
HETATM
E
O
HOH
4
1.00
1
O
18.12
1.135
13.242
7.519
A
O
HOH
56
HETATM
E
O
HOH
4
1.00
1
O
39.80
0.362
16.501
8.189
A
O
HOH
57
HETATM
E
O
HOH
4
1.00
1
O
45.27
-7.609
15.406
20.549
A
O
HOH
59
HETATM
E
O
HOH
4
1.00
1
O
24.44
3.414
20.425
13.853
A
O
HOH
61
HETATM
E
O
HOH
4
1.00
1
O
41.88
-0.922
14.421
4.387
A
O
HOH
62
HETATM
E
O
HOH
4
1.00
1
O
49.70
-4.051
15.600
4.135
A
O
HOH
64
HETATM
E
O
HOH
4
1.00
1
O
41.00
7.872
7.200
6.388
A
O
HOH
65
HETATM
E
O
HOH
4
1.00
1
O
21.04
-8.744
7.309
12.588
A
O
HOH
66
HETATM
E
O
HOH
4
1.00
1
O
21.70
-4.540
8.157
13.647
A
O
HOH
67
HETATM
E
O
HOH
4
1.00
1
O
22.51
-7.956
9.575
12.909
A
O
HOH
68
HETATM
E
O
HOH
4
1.00
1
O
22.52
-5.959
5.445
13.507
A
O
HOH
69
HETATM
E
O
HOH
4
1.00
1
O
21.70
-7.443
7.236
14.769
A
O
HOH
70
HETATM
E
O
HOH
4
1.00
1
O
22.02
-6.303
7.134
10.924
A
O
HOH
71
HETATM
E
O
HOH
4
1.00
1
O
45.71
11.528
10.558
7.958
B
O
HOH
18
HETATM
F
O
HOH
4
1.00
1
O
48.61
14.868
20.031
14.457
B
O
HOH
19
HETATM
F
O
HOH
4
1.00
1
O
35.84
6.376
6.045
15.318
B
O
HOH
20
HETATM
F
O
HOH
4
1.00
1
O
41.11
-2.787
9.867
22.218
B
O
HOH
22
HETATM
F
O
HOH
4
1.00
1
O
23.30
2.861
14.967
6.521
B
O
HOH
24
HETATM
F
O
HOH
4
1.00
1
O
56.42
4.563
16.038
14.706
B
O
HOH
26
HETATM
F
O
HOH
4
1.00
1
O
27.50
5.231
15.206
17.285
B
O
HOH
27
HETATM
F
O
HOH
4
1.00
1
O
47.86
6.776
27.017
5.635
B
O
HOH
30
HETATM
F
O
HOH
4
1.00
1
O
42.18
13.272
18.232
5.109
B
O
HOH
33
HETATM
F
O
HOH
4
1.00
1
O
23.01
9.930
8.673
13.536
B
O
HOH
34
HETATM
F
O
HOH
4
1.00
1
O
38.74
11.893
18.251
8.018
B
O
HOH
35
HETATM
F
O
HOH
4
1.00
1
O
39.02
11.734
20.838
12.543
B
O
HOH
36
HETATM
F
O
HOH
4
1.00
1
O
32.46
11.229
15.992
6.628
B
O
HOH
41
HETATM
F
O
HOH
4
1.00
1
O
31.30
7.097
24.388
1.809
B
O
HOH
42
HETATM
F
O
HOH
4
1.00
1
O
48.45
11.217
7.998
10.116
B
O
HOH
43
HETATM
F
O
HOH
4
1.00
1
O
30.89
14.013
14.801
14.759
B
O
HOH
45
HETATM
F
O
HOH
4
1.00
1
O
35.59
14.350
17.143
8.513
B
O
HOH
47
HETATM
F
O
HOH
4
1.00
1
O
36.73
17.828
1.282
25.304
B
O
HOH
49
HETATM
F
O
HOH
4
1.00
1
O
32.93
3.759
18.352
12.235
B
O
HOH
51
HETATM
F
O
HOH
4
1.00
1
O
24.67
8.078
13.848
19.737
B
O
HOH
54
HETATM
F
O
HOH
4
1.00
1
O
20.81
6.675
17.356
12.366
B
O
HOH
55
HETATM
F
O
HOH
4
1.00
1
O
18.18
12.897
17.869
20.122
B
O
HOH
58
HETATM
F
O
HOH
4
1.00
1
O
27.47
15.038
9.448
17.485
B
O
HOH
60
HETATM
F
O
HOH
4
1.00
1
O
55.01
0.276
19.466
7.064
B
O
HOH
63
HETATM
F
O
HOH
4
1.00
1
O
0.049164
0.000000
0.000000
0.000000
0.033761
0.000000
0.000000
0.000000
0.019257
0.00000
0.00000
0.00000
Mooers, B.H.M.
Eichman, B.F.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
20.340
29.620
51.930
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Co H18 N6 3
161.116
COBALT HEXAMMINE(III)
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
MG
N
113
N
CO
N
114
N
N
N
115
N
N
N
116
N
N
N
117
N
N
N
118
N
N
N
119
N
N
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
269
796
810
10.1006/jmbi.1997.1100
9223642
The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals.
1997
10.2210/pdb313d/pdb
pdb_0000313d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.00
1
AREA DETECTOR
1996-05-01
SIEMENS HI-STAR
M
x-ray
1
1.5418
1.0
1.5418
SEALED TUBE
2153.438
DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3')
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
161.116
COBALT HEXAMMINE(III)
1
syn
non-polymer
18.015
water
55
nat
water
no
yes
(DG)(5CM)(DG)(DC)(DG)(DC)(DG)
GCGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
1
1.82
32.27
VAPOR DIFFUSION, SITTING DROP
7.00
pH 7.00, VAPOR DIFFUSION, SITTING DROP
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
[CO(NH3)6]3+
1
MPD
2
WATER
2
12.244
1
19
A
2
B
14
2.367
A_5CM2:DG14_B
1
-0.267
-0.194
-0.285
0.043
-9.579
1
19
A
3
B
13
3.616
A_DG3:DC13_B
2
-2.291
0.167
0.134
-0.172
0.732
1
19
A
4
B
12
1.454
A_DC4:DG12_B
3
-0.711
-0.278
0.211
-0.121
-2.362
1
19
A
5
B
11
1.212
A_DG5:DC11_B
4
0.139
0.162
-0.029
-0.093
6.532
1
19
A
6
B
10
2.118
A_DC6:DG10_B
5
-1.793
-0.401
0.215
-0.192
-8.612
1
19
A
7
B
9
0.662
A_DG7:5CM9_B
6
0.032
0.440
0.358
-0.250
4.640
-7.523
A
A
2
3
15.161
B
B
14
13
4.029
-1.857
-0.027
5.745
AA_5CM2DG3:DC13DG14_BB
1
-4.080
-33.304
-6.043
-34.755
-20.051
3.256
-49.784
A
A
3
4
2.143
B
B
13
12
3.297
-1.804
-0.157
-1.209
AA_DG3DC4:DG12DC13_BB
2
0.901
1.070
-49.746
1.568
-0.121
5.030
-9.065
A
A
4
5
18.366
B
B
12
11
3.688
-2.823
-0.021
5.273
AA_DC4DG5:DC11DG12_BB
3
2.234
14.536
-8.321
-24.424
6.943
3.262
-51.098
A
A
5
6
1.564
B
B
11
10
3.294
-1.349
-0.084
-0.907
AA_DG5DC6:DG10DC11_BB
4
-2.665
-3.091
-51.016
1.146
-0.282
0.522
-6.176
A
A
6
7
-29.757
B
B
10
9
4.189
2.940
0.130
5.672
AA_DC6DG7:5CM9DG10_BB
5
-2.792
-28.258
-4.661
-64.500
-10.047
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1997-08-05
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
NDB
1997-02-04
REL
REL
MG
MAGNESIUM ION
NCO
COBALT HEXAMMINE(III)
HOH
water
MO6
16
2
MG
MG
16
A
NCO
15
3
NCO
NCO
15
A
HOH
17
4
HOH
HOH
17
A
HOH
21
4
HOH
HOH
21
A
HOH
23
4
HOH
HOH
23
A
HOH
25
4
HOH
HOH
25
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
44
4
HOH
HOH
44
A
HOH
46
4
HOH
HOH
46
A
HOH
48
4
HOH
HOH
48
A
HOH
50
4
HOH
HOH
50
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
59
4
HOH
HOH
59
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
MO6
16
4
HOH
HOH
66
A
MO6
16
4
HOH
HOH
67
A
MO6
16
4
HOH
HOH
68
A
MO6
16
4
HOH
HOH
69
A
MO6
16
4
HOH
HOH
70
A
MO6
16
4
HOH
HOH
71
A
HOH
18
4
HOH
HOH
18
B
HOH
19
4
HOH
HOH
19
B
HOH
20
4
HOH
HOH
20
B
HOH
22
4
HOH
HOH
22
B
HOH
24
4
HOH
HOH
24
B
HOH
26
4
HOH
HOH
26
B
HOH
27
4
HOH
HOH
27
B
HOH
30
4
HOH
HOH
30
B
HOH
33
4
HOH
HOH
33
B
HOH
34
4
HOH
HOH
34
B
HOH
35
4
HOH
HOH
35
B
HOH
36
4
HOH
HOH
36
B
HOH
41
4
HOH
HOH
41
B
HOH
42
4
HOH
HOH
42
B
HOH
43
4
HOH
HOH
43
B
HOH
45
4
HOH
HOH
45
B
HOH
47
4
HOH
HOH
47
B
HOH
49
4
HOH
HOH
49
B
HOH
51
4
HOH
HOH
51
B
HOH
54
4
HOH
HOH
54
B
HOH
55
4
HOH
HOH
55
B
HOH
58
4
HOH
HOH
58
B
HOH
60
4
HOH
HOH
60
B
HOH
63
4
HOH
HOH
63
B
G
1
n
1
DG
1
A
+C
2
n
2
5CM
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
G
7
n
7
DG
7
A
G
8
n
1
DG
8
B
+C
9
n
2
5CM
9
B
G
10
n
3
DG
10
B
C
11
n
4
DC
11
B
G
12
n
5
DG
12
B
C
13
n
6
DC
13
B
G
14
n
7
DG
14
B
author_defined_assembly
2
dimeric
A
HOH
66
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
67
E
O
HOH
1_555
160.7
A
HOH
66
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
68
E
O
HOH
1_555
60.3
A
HOH
67
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
68
E
O
HOH
1_555
101.0
A
HOH
66
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
69
E
O
HOH
1_555
108.5
A
HOH
67
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
69
E
O
HOH
1_555
88.2
A
HOH
68
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
69
E
O
HOH
1_555
162.0
A
HOH
66
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
70
E
O
HOH
1_555
75.2
A
HOH
67
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
70
E
O
HOH
1_555
98.6
A
HOH
68
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
70
E
O
HOH
1_555
82.3
A
HOH
69
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
70
E
O
HOH
1_555
81.0
A
HOH
66
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
87.4
A
HOH
67
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
101.1
A
HOH
68
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
98.1
A
HOH
69
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
95.3
A
HOH
70
E
O
HOH
1_555
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
159.8
A
5CM
2
A
5CM
2
DC
B
5CM
9
B
5CM
2
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-5.17
0.80
102.40
97.23
B
B
B
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
PAR_NDB.DNA
TOP_NDB.DNA
PAR_NDB_HIGH.DNA
15.90
0.287
0.207
0.207
1.680
8.000
3538
1
3.000
MOLECULAR REPLACEMENT
0.20
1.680
8.000
49
349
16
284
0
0.007
1.48
1.680
313D
5324
2.000
0.086
1
2.500
84.500
refinement
X-PLOR
data reduction
SAINT
data scaling
SAINT
Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.598
both
A
DG
1
A
O3'
DG
1
1_555
A
5CM
2
A
P
5CM
2
1_555
covale
1.605
both
A
5CM
2
A
O3'
5CM
2
1_555
A
DG
3
A
P
DG
3
1_555
covale
1.596
both
B
DG
8
B
O3'
DG
1
1_555
B
5CM
9
B
P
5CM
2
1_555
covale
1.613
both
B
5CM
9
B
O3'
5CM
2
1_555
B
DG
10
B
P
DG
3
1_555
metalc
2.182
A
MG
16
C
MG
MG
1_555
A
HOH
66
E
O
HOH
1_555
metalc
2.300
A
MG
16
C
MG
MG
1_555
A
HOH
67
E
O
HOH
1_555
metalc
2.584
A
MG
16
C
MG
MG
1_555
A
HOH
68
E
O
HOH
1_555
metalc
2.099
A
MG
16
C
MG
MG
1_555
A
HOH
69
E
O
HOH
1_555
metalc
1.972
A
MG
16
C
MG
MG
1_555
A
HOH
70
E
O
HOH
1_555
metalc
2.102
A
MG
16
C
MG
MG
1_555
A
HOH
71
E
O
HOH
1_555
hydrog
WATSON-CRICK
A
5CM
2
A
N3
5CM
2
1_555
B
DG
14
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
5CM
2
A
N4
5CM
2
1_555
B
DG
14
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
5CM
2
A
O2
5CM
2
1_555
B
DG
14
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
13
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
13
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
13
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
12
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
12
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
12
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
11
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
11
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
11
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
10
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
10
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
10
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
5CM
9
B
N3
5CM
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
5CM
9
B
O2
5CM
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
5CM
9
B
N4
5CM
2
1_555
DNA
Z-DNA, DOUBLE HELIX, MODIFIED, OVERHANGING BASE, FLIPPED-OUT BASE, DNA
313D
PDB
1
313D
1
7
313D
1
7
313D
A
1
1
7
8
14
313D
8
14
313D
B
1
1
7
BINDING SITE FOR RESIDUE MG A 16
A
MG
16
Software
7
BINDING SITE FOR RESIDUE NCO A 15
A
NCO
15
Software
7
A
HOH
66
E
HOH
7
1_555
A
HOH
67
E
HOH
7
1_555
A
HOH
68
E
HOH
7
1_555
A
HOH
69
E
HOH
7
1_555
A
HOH
70
E
HOH
7
1_555
A
HOH
71
E
HOH
7
1_555
B
DG
14
B
DG
7
7
3_545
A
DC
4
A
DC
4
7
1_555
A
DG
5
A
DG
5
7
1_555
A
DG
5
A
DG
5
7
3_545
A
HOH
44
E
HOH
7
1_555
A
HOH
61
E
HOH
7
3_545
B
DG
14
B
DG
7
7
3_545
B
HOH
63
F
HOH
7
3_545
19
P 21 21 21