Contacts of ligand NYM 207E in PDB entry 363D
Ligand-Protein Contacts (LPC) are derived
with the LPC software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
On this page you will find:
- 3D ligand structure presentation with
Jmol, an open-source
Java viewer for chemical structures in 3D (top left window)
- Solvent accessible surface of the ligand
complexed with protein and in uncomplexed form
(top right window). Clicking
on "select" buttons highlights atoms in 3D picture
- List of residues in contact
with the ligand
- List of putative hydrogen
bonds formed by the ligand
- Full list of atomic contacts
formed by the ligand
- Values of ligand complementarity
(a function of atomic contact
surface area and the chemical properties of contacting atoms)
- Prediction of complementarity changes as a
function of atomic substitution
in the
ligand
Table II
Residues in contact with ligand NYM 207E
in PDB entry 363D (back to top of page)
Legend:
Dist - nearest distance (Å) between atoms of the ligand and the residue
Surf - contact surface area (Å2) between the ligand and the residue
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues contacting ligand by their side chain
(including CA atoms)
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206E A43 1.6 116.8 + + + +
208E NYM 1.6 111.7 + + + +
217F A43 4.2 1.0 + - - -
218F A43 2.7 52.1 + - - -
219F NYM 3.7 9.0 - - - +
----------------------------------------------------------
Table III
List of putative hydrogen bonds between ligand NYM 207E
and protein in PDB entry 363D
(back to top
of page)
Legend:
N - ligand atom number in PDB entry
Dist - distance (Å) between the ligand and protein atoms
Surf - contact surface area (Å2) between the ligand and protein atoms
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
1 N1 I A43 206E N3 I 3.9 0.2
4 O2 II NYM 208E N1 I 4.0 1.2
5 N3 I A43 218F N1 I 2.7 17.8
5 N3 I NYM 208E O4 II 3.5 1.2
5 N3 I A43 206E N1 I 3.6 2.6
7 O4 II A43 218F N6 I 3.0 19.9
7 O4 II A43 206E N6 I 3.5 5.4
7 O4 II A43 217F N6 I 4.2 1.0
10 O4' II A43 206E N3 I 4.2 0.2
11 N3' I NYM 208E OP1 I 2.5 11.3
11 N3' I NYM 208E O5' II 2.5 3.2
11 N3' I NYM 208E OP2 I 2.5 1.2
16 O5' II A43 206E N I 2.5 2.3
16 O5' II NYM 208E OP2 I 4.4 1.4
19 OP2 I A43 206E N I 2.6 9.5
19 OP2 I A43 206E O5' II 4.5 0.9
19 OP2 I A43 206E O2P I 5.0 1.7
19 OP2 I A43 206E O1P I 5.1 1.0
20 OP1 I A43 206E N I 2.4 13.5
20 OP1 I NYM 208E OP2 I 5.4 0.3
------------------------------------------------------------------------
Table IV
Full list of atomic contacts with ligand NYM 207E
in PDB entry 363D (back
to top of page)
Total number of contacts is 61
Legend:
N - ligand atom number in PDB entry
Dist - distance (A) between the ligand and protein atoms
Surf - contact surface area (A**2) between the ligand and protein atoms
* - indicates destabilizing contacts
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
1 N1 I A43 206E N3 I 3.9 0.2
2 C6 V NYM 208E C7 IV 3.7 2.2
2 C6 V A43 206E C4 V 3.9 6.5
3 C2 V A43 218F N1 I 3.6 1.1
3 C2 V NYM 208E C5 V 3.7 4.3
3 C2 V A43 206E C2 V 3.8 8.1
4 O2 II A43 218F C2 V 3.5 13.0
4 O2 II NYM 219F O2 II 3.7 9.0*
4 O2 II NYM 208E C6 V 4.0 2.6
4 O2 II NYM 208E N1 I 4.0 1.2
4 O2 II NYM 208E C2 V 4.1 0.2
4 O2 II NYM 208E O4' II 4.4 0.7*
4 O2 II NYM 208E C1' VI 4.6 0.3
5 N3 I A43 218F N1 I 2.7 17.8
5 N3 I NYM 208E O4 II 3.5 1.2
5 N3 I A43 206E N1 I 3.6 2.6
6 C4 V NYM 208E O4 II 3.4 7.2
6 C4 V A43 218F N1 I 3.6 0.2
6 C4 V A43 206E C6 V 3.6 7.0
7 O4 II A43 218F N6 I 3.0 19.9
7 O4 II NYM 208E O4 II 3.4 3.6*
7 O4 II A43 206E N6 I 3.5 5.4
7 O4 II A43 217F N6 I 4.2 1.0
8 C5 V NYM 208E C7 IV 3.7 2.7
8 C5 V A43 206E C5 V 3.8 2.5
9 C7 IV A43 206E N7 I 3.8 15.5*
9 C7 IV A43 206E C8 V 3.9 2.2
9 C7 IV NYM 208E C7 IV 4.3 5.8
9 C7 IV NYM 208E O4 II 4.9 0.2*
9 C7 IV A43 206E O2P I 5.0 3.6*
10 O4' II A43 206E C2' IV 3.4 6.6*
10 O4' II A43 206E N3 I 4.2 0.2
11 N3' I NYM 208E P1 VI 1.6 24.4
11 N3' I NYM 208E OP1 I 2.5 11.3
11 N3' I NYM 208E O5' II 2.5 3.2
11 N3' I NYM 208E OP2 I 2.5 1.2
11 N3' I NYM 208E C5' VIII 3.0 3.8
12 C1' VI A43 206E N3 I 4.3 4.0
12 C1' VI A43 206E C2 V 4.6 0.9
13 C2' IV NYM 208E O4' II 3.4 18.8*
13 C2' IV NYM 208E O5' II 3.5 1.1*
13 C2' IV NYM 208E C6 V 3.5 1.6
13 C2' IV NYM 208E C5' VIII 3.7 1.1
14 C3' VI NYM 208E P1 VI 2.7 2.5
14 C3' VI NYM 208E OP2 I 2.9 7.6
15 C4' VIII A43 206E C2' IV 4.2 0.2
16 O5' II A43 206E N I 2.5 2.3
16 O5' II NYM 208E OP2 I 4.4 1.4
17 C5' VIII A43 206E N I 3.1 8.3
17 C5' VIII A43 206E C2' IV 3.6 2.7
17 C5' VIII NYM 208E OP2 I 4.5 0.4
18 P1 VI A43 206E N I 1.6 5.3
19 OP2 I A43 206E N I 2.6 9.5
19 OP2 I A43 206E C3' VI 3.1 5.7
19 OP2 I A43 206E O5' II 4.5 0.9
19 OP2 I A43 206E C5' VIII 4.6 0.5
19 OP2 I A43 206E O2P I 5.0 1.7
19 OP2 I A43 206E O1P I 5.1 1.0
19 OP2 I NYM 208E C7 IV 5.4 0.7*
20 OP1 I A43 206E N I 2.4 13.5
20 OP1 I NYM 208E OP2 I 5.4 0.3
------------------------------------------------------------------------
Table V
Complementarity values for the ligand NYM 207E
in PDB entry 363D (back to top of page)
---------------------------------------------
Theoretical maximum (Å2) 439
Actual value (Å2) 170
Normalised complementarity 0.39
---------------------------------------------
Table VI
Normalised complementarity as a function of atomic
substitution for ligand NYM 207E
in PDB entry 363D (back
to top of page)
Legend:
| N | - ligand atom number in PDB entry |
| Bold
| - indicates atomic
substitution which could stabilize the complex |
| Italics | - indicates atomic
substitution which could destabilize the complex |
|
Ligand atom | Atom class |
|---|
| N | Type | Class | I
| II | III | IV | V |
VI | VII | VIII |
|---|
| 1 | N1
| I |
0.39 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
| 2 | C6
| V |
0.38 |
0.38
|
0.38 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
| 3 | C2
| V |
0.39 |
0.39
|
0.39 |
0.38
|
0.39 |
0.39
|
0.39 |
0.39
|
| 4 | O2
| II |
0.43 |
0.39
|
0.43 |
0.38
|
0.43 |
0.43
|
0.43 |
0.39
|
| 5 | N3
| I |
0.39 |
0.38
|
0.39 |
0.29
|
0.39 |
0.39
|
0.39 |
0.38
|
| 6 | C4
| V |
0.39 |
0.36
|
0.39 |
0.35
|
0.39 |
0.39
|
0.39 |
0.36
|
| 7 | O4
| II |
0.41 |
0.39
|
0.41 |
0.27
|
0.41 |
0.41
|
0.41 |
0.39
|
| 8 | C5
| V |
0.38 |
0.38
|
0.38 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
| 9 | C7
| IV |
0.45 |
0.45
|
0.45 |
0.39
|
0.48 |
0.48
|
0.48 |
0.48
|
| 10 | O4'
| II |
0.39 |
0.39
|
0.39 |
0.42
|
0.42 |
0.42
|
0.42 |
0.42
|
| 11 | N3'
| I |
0.39 |
0.36
|
0.39 |
0.32
|
0.39 |
0.39
|
0.39 |
0.36
|
| 12 | C1'
| VI |
0.39 |
0.39
|
0.39 |
0.37
|
0.39 |
0.39
|
0.39 |
0.39
|
| 13 | C2'
| IV |
0.48 |
0.38
|
0.48 |
0.39
|
0.48 |
0.48
|
0.48 |
0.38
|
| 14 | C3'
| VI |
0.39 |
0.39
|
0.39 |
0.35
|
0.39 |
0.39
|
0.39 |
0.39
|
| 15 | C4'
| VIII |
0.39 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
0.39 |
0.39
|
| 16 | O5'
| II |
0.39 |
0.39
|
0.39 |
0.37
|
0.39 |
0.39
|
0.39 |
0.39
|
| 17 | C5'
| VIII |
0.38 |
0.38
|
0.38 |
0.35
|
0.39 |
0.39
|
0.39 |
0.39
|
| 18 | P1
| VI |
0.39 |
0.39
|
0.39 |
0.36
|
0.39 |
0.39
|
0.39 |
0.39
|
| 19 | OP2
| I |
0.39 |
0.38
|
0.39 |
0.33
|
0.39 |
0.39
|
0.39 |
0.39
|
| 20 | OP1
| I |
0.39 |
0.39
|
0.39 |
0.33
|
0.39 |
0.39
|
0.39 |
0.39
|
A short description of the
analytical approach (back to top of page)
The analysis of ligand-protein contacts used in this page
is based upon the surface complementarity approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
The complementarity function
therein is defined as:
Where Sl is the sum of all
surface areas of legitimate atomic contacts between
ligand and receptor, Si is the sum of
all surface areas of illegitimate atomic
contacts, and E is a repulsion term.
Legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
WARNING !!
Atom classes for ligands are automatically
assigned based on the atomic coordinates. However, in
three cases the automatic assignment is
currently ambiguous (due to low resolution). In these
three cases, the user is advised to manually analyze
the full list of contacts (Table IV).
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
IN YOUR STRUCTURE, the following atoms
fall in these ambiguous cases:
Ligand C42 1
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 2
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 3
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 4
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 5
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 6
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 7
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 8
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 9
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 10
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 11
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand C42 13
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 14
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 15
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 16
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 17
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 18
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 19
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 20
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 21
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 22
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 23
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand C42 101
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 102
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 103
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 104
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 105
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 106
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 107
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 108
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 109
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 110
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 111
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand C42 113
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 114
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 115
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 116
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 117
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 118
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 119
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 120
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 121
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 122
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 123
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand C42 201
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 202
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 203
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 204
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 205
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 206
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 207
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 208
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 209
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 210
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 211
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand C42 213
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2 15 O5'
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 16 N
Ligand G38 214
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 215
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 216
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand A43 217
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand A43 218
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
20 C4 14 C5 15 C6 18 C2 20 C4
3. Nitrogen ("hydrophilic")
11 N9 13 N7 16 N6 17 N1 19 N3 21 N
Ligand NYM 219
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand NYM 220
1. Carbon (in rings)
2 C6 8 C5 6 C4 3 C2 12 C1' 13 C2'
14 C3' 15 C4'
2. Oxygen ("hydroxy" or "carbonyl")
4 O2 7 O4
3. Nitrogen ("hydrophilic")
1 N1 5 N3 11 N3'
Ligand C42 221
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand G38 222
1. Carbon (in rings)
6 C4' 10 C1' 9 C2' 8 C3' 12 C8 14 C5
21 C4 14 C5 15 C6 18 C2 21 C4
2. Oxygen ("hydroxy" or "carbonyl")
16 O6
3. Nitrogen ("hydrophilic")
11 N9 13 N7 17 N1 19 N2 20 N3 22 N
Ligand C42 223
1. Carbon (in rings)
2 C2 4 C4 5 C5 6 C6 9 C1' 10 C2'
11 C3' 12 C4'
2. Oxygen ("hydroxy" or "carbonyl")
7 O2
3. Nitrogen ("hydrophilic")
1 N1 3 N3 8 N4 19 N
Ligand NH4 237
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 239
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 226
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 228
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 238
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 240
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 225
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 227
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 243
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 245
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 244
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 248
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 242
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 246
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 241
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 247
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 229
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 235
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 230
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 234
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 232
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 231
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 236
3. Nitrogen ("hydrophilic")
1 N
Ligand NH4 233
3. Nitrogen ("hydrophilic")
1 N
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