Contacts of ligand BDP 2A in PDB entry 1CAP

This page lists ligand-protein contacts, but there are no protein atoms in PDB entry 1CAP. WARNING !!
Atom classes for ligands are automatically assigned based on the atomic coordinates. However, in three cases the automatic assignment is currently ambiguous (due to low resolution). In these three cases, the user is advised to manually analyze the full list of contacts (Table IV).

1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

IN YOUR STRUCTURE, the following atoms fall in these ambiguous cases:

Ligand GAL    1
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand BDP    2
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6A   12 O6B

Ligand BGC    3
1. Carbon (in rings)
                     1 C2     2 C3     3 C4     4 C5     6 C1 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand MAN    4
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand GAL    5
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand BDP    6
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6A   12 O6B

Ligand BGC    7
1. Carbon (in rings)
                     1 C2     2 C3     3 C4     4 C5     6 C1 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand MAN    8
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand MAN    9
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand CEG   10
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5     4 C4 
                     5 C5     6 C6     7 C7 
2. Oxygen ("hydroxy" or "carbonyl")
                    10 O2    11 O3    15 O8A   16 O8B

Ligand MAN   11
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5 
2. Oxygen ("hydroxy" or "carbonyl")
                     7 O2     8 O3     9 O4    11 O6

Ligand CEG   12
1. Carbon (in rings)
                     1 C1     2 C2     3 C3     4 C4     5 C5     4 C4 
                     5 C5     6 C6     7 C7 
2. Oxygen ("hydroxy" or "carbonyl")
                    10 O2    11 O3    15 O8A   16 O8B

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