Contacts of ligand SMA 503P in PDB entry 2QJK
Ligand-Protein Contacts (LPC) are derived
with the LPC software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
On this page you will find:
- 3D ligand structure presentation with
Jmol, an open-source
Java viewer for chemical structures in 3D (top left window)
- Solvent accessible surface of the ligand
complexed with protein and in uncomplexed form
(top right window). Clicking
on "select" buttons highlights atoms in 3D picture
- List of residues in contact
with the ligand
- List of putative hydrogen
bonds formed by the ligand
- Full list of atomic contacts
formed by the ligand
- Values of ligand complementarity
(a function of atomic contact
surface area and the chemical properties of contacting atoms)
- Prediction of complementarity changes as a
function of atomic substitution
in the
ligand
Table II
Residues in contact with ligand SMA 503P
in PDB entry 2QJK (back to top of page)
Legend:
Dist - nearest distance (Å) between atoms of the ligand and the residue
Surf - contact surface area (Å2) between the ligand and the residue
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues contacting ligand by their side chain
(including CA atoms)
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151O CYS* 3.7 36.1 - - - +
152O HIS* 2.8 22.3 + - - -
137P LEU* 4.2 27.4 - - - +
140P MET* 4.1 24.6 - - - +
141P ALA* 4.0 26.3 + - + -
144P PHE* 3.5 51.3 - - + -
145P MET* 3.8 29.4 - - + -
147P TYR* 4.8 1.6 - - - -
154P MET* 4.2 23.2 - - - +
158P GLY* 3.5 24.8 - - - -
161P VAL* 3.5 22.3 - - + +
162P ILE* 3.5 49.0 - - + +
163P THR* 5.2 3.1 - - + -
165P LEU* 4.6 14.6 - - + -
166P PHE* 4.1 29.4 - - + -
180P LEU* 3.6 40.6 - - + -
193P ARG* 6.4 0.2 - - - -
194P PHE* 3.8 23.3 - - + -
197P LEU* 3.8 17.9 - - + -
201P LEU* 6.4 0.4 - - + -
292P ILE* 3.8 41.3 - - + +
293P VAL 3.1 30.3 - - - +
294P PRO* 3.4 30.4 - - + +
295P GLU* 3.1 31.1 + - - +
298P PHE* 3.5 60.1 - - + -
301P PHE* 4.1 20.4 - - + -
302P TYR* 3.2 38.3 - + + -
305P LEU* 4.3 15.7 - - + -
336P MET* 3.3 51.1 - - - +
337P PHE* 3.7 25.8 - - + -
340P ILE* 3.8 23.6 - - - -
----------------------------------------------------------
Table III
List of putative hydrogen bonds between ligand SMA 503P
and protein in PDB entry 2QJK
(back to top
of page)
Legend:
N - ligand atom number in PDB entry
Dist - distance (Å) between the ligand and protein atoms
Surf - contact surface area (Å2) between the ligand and protein atoms
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
32 O4 II HIS 152O NE2 I 2.8 18.9
33 O5 II HIS 152O NE2 I 3.5 2.3
35 O8 I GLU 295P OE1 II 3.1 14.6
35 O8 I GLU 295P OE2 II 3.4 7.6
37 O14 II ALA 141P N III 4.0 4.5
------------------------------------------------------------------------
Table IV
Full list of atomic contacts with ligand SMA 503P
in PDB entry 2QJK (back
to top of page)
Total number of contacts is 169
Legend:
N - ligand atom number in PDB entry
Dist - distance (A) between the ligand and protein atoms
Surf - contact surface area (A**2) between the ligand and protein atoms
* - indicates destabilizing contacts
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
1 C2 V ILE 162P CD1 IV 4.2 1.1
1 C2 V ILE 162P CG1 IV 4.6 0.2
1 C2 V TYR 302P CB IV 4.7 3.1
1 C2 V PRO 294P CG IV 4.8 0.4
1 C2 V PRO 294P CB IV 4.9 0.7
2 C3 V TYR 302P CD1 V 3.9 1.8
2 C3 V VAL 161P CG1 IV 4.5 1.6
2 C3 V ILE 162P CD1 IV 5.0 0.2
2 C3 V ILE 162P CG1 IV 5.1 0.2
2 C3 V LEU 165P CD1 IV 5.2 0.4
3 C3M IV MET 336P SD VIII 3.8 20.0
3 C3M IV TYR 302P CD1 V 4.0 9.6
3 C3M IV TYR 302P CA VII 4.1 5.8
3 C3M IV LEU 305P CD1 IV 4.3 14.4
3 C3M IV LEU 305P CB IV 4.4 0.7
3 C3M IV LEU 305P CD2 IV 4.5 0.7
3 C3M IV LEU 165P CD1 IV 4.7 6.3
3 C3M IV LEU 165P CD2 IV 4.8 2.2
4 C4 V TYR 302P CD1 V 3.5 4.9
4 C4 V VAL 161P CG1 IV 3.7 4.9
5 C4A V PRO 294P CG IV 3.4 2.5
5 C4A V VAL 161P CG1 IV 3.9 2.5
6 C5 V PRO 294P CG IV 3.4 3.1
6 C5 V VAL 161P CG1 IV 3.8 4.9
7 C5M VIII CYS 151O O II 3.7 22.7*
7 C5M VIII ILE 292P CD1 IV 3.8 21.8
7 C5M VIII CYS 151O SG VI 3.9 11.2
7 C5M VIII ILE 292P CG1 IV 4.0 4.0
7 C5M VIII CYS 151O CB IV 4.0 1.8
7 C5M VIII HIS 152O NE2 I 4.1 0.7
7 C5M VIII CYS 151O CA VII 4.1 0.4
7 C5M VIII HIS 152O CE1 V 4.1 0.4
7 C5M VIII TYR 302P CE1 V 4.2 6.1
7 C5M VIII VAL 161P CG2 IV 4.4 2.7
7 C5M VIII PRO 294P CG IV 4.5 2.0
7 C5M VIII TYR 302P OH I 4.5 1.6
7 C5M VIII ILE 292P CG2 IV 4.8 0.9
7 C5M VIII PRO 294P CD IV 4.8 0.7
7 C5M VIII ILE 292P O II 4.9 0.7*
8 C6 V PRO 294P CG IV 3.5 2.2
8 C6 V GLY 158P CA VI 4.1 9.0
8 C6 V ILE 292P CD1 IV 4.5 1.6
9 C7 V PRO 294P CG IV 3.6 0.7
9 C7 V GLY 158P CA VI 3.8 5.8
10 C7M VIII VAL 293P O II 3.1 28.0*
10 C7M VIII PRO 294P CA IV 3.4 5.6
10 C7M VIII VAL 293P C VI 3.5 2.2
10 C7M VIII GLU 295P OE1 II 3.6 6.3*
10 C7M VIII ILE 292P CG1 IV 4.2 12.3
10 C7M VIII MET 154P SD VIII 4.2 9.4*
10 C7M VIII MET 154P O II 4.3 9.6*
10 C7M VIII MET 154P CB IV 4.4 3.6
10 C7M VIII GLY 158P CA VI 4.5 0.7
10 C7M VIII GLU 295P CD VI 4.7 0.2
10 C7M VIII TYR 147P CE2 V 4.8 0.2
11 C8 V PRO 294P CB IV 3.4 5.8
11 C8 V ILE 162P CD1 IV 3.9 4.9
12 C8A V PRO 294P CG IV 3.5 4.0
12 C8A V ILE 162P CD1 IV 3.8 4.9
13 C9 IV MET 336P SD VIII 4.1 3.8
13 C9 IV PHE 298P CB IV 4.7 2.5
13 C9 IV TYR 302P CA VII 5.0 2.9
14 C10 IV ILE 162P CD1 IV 3.8 6.1
14 C10 IV ILE 162P CG1 IV 4.6 0.9
14 C10 IV LEU 165P CD1 IV 4.6 4.3
15 C11 IV PHE 298P CE1 V 3.9 6.1
15 C11 IV PHE 298P CD1 V 4.0 0.7
15 C11 IV PHE 298P CZ V 4.0 0.2
16 C12 VIII PHE 298P CE1 V 4.6 2.0
16 C12 VIII MET 140P SD VIII 4.7 1.3*
17 C13 IV ILE 162P CG2 IV 4.0 2.7
17 C13 IV LEU 165P CD1 IV 4.9 0.7
18 C14 VIII PHE 337P CE1 V 4.4 3.6
18 C14 VIII PHE 337P CZ V 4.6 0.7
19 C15 IV ILE 162P CG2 IV 3.6 10.5
19 C15 IV PHE 166P CE1 V 4.5 7.0
19 C15 IV PHE 166P CZ V 4.6 1.1
19 C15 IV PHE 337P CZ V 4.9 1.6
19 C15 IV LEU 165P CD1 IV 5.2 0.7
20 C16 IV ALA 141P CA VII 4.4 6.1
20 C16 IV PHE 166P CZ V 4.5 4.0
20 C16 IV ALA 141P CB IV 4.5 0.9
21 C17 IV PHE 144P CD2 V 4.0 6.3
21 C17 IV PHE 166P CE1 V 4.1 11.4
21 C17 IV PHE 144P CE2 V 4.1 0.7
21 C17 IV ILE 162P CG2 IV 4.2 0.9
21 C17 IV PHE 166P CZ V 4.2 0.4
22 C18 IV PHE 144P CD2 V 4.2 3.6
22 C18 IV ALA 141P CB IV 4.5 10.8
22 C18 IV ALA 141P CA VII 4.7 0.2
22 C18 IV PHE 166P CZ V 4.8 2.9
23 C19 IV PHE 144P CE2 V 4.0 2.2
23 C19 IV PHE 144P CD2 V 4.3 0.2
23 C19 IV LEU 180P CD1 IV 4.5 1.8
23 C19 IV PHE 166P CZ V 5.3 0.2
24 C20 IV MET 145P SD VIII 4.0 9.6
24 C20 IV MET 145P CE IV 4.7 1.6
24 C20 IV LEU 180P CD1 IV 5.0 0.7
24 C20 IV LEU 180P CD2 IV 5.2 0.7
24 C20 IV ALA 141P CB IV 5.4 1.3
24 C20 IV LEU 201P CD1 IV 6.4 0.4
25 C21 IV MET 145P SD VIII 3.8 18.2
25 C21 IV PHE 194P CE1 V 3.8 16.4
25 C21 IV LEU 197P CD1 IV 3.8 17.9
25 C21 IV LEU 180P CD2 IV 4.6 12.8
25 C21 IV ARG 193P CD VII 6.4 0.2
26 C22 IV PHE 298P CD1 V 3.5 22.0
26 C22 IV PHE 298P CG V 3.7 1.1
26 C22 IV PHE 298P CE1 V 3.9 0.9
26 C22 IV PHE 301P CB IV 4.1 20.2
26 C22 IV PHE 298P CB IV 4.1 0.7
26 C22 IV MET 140P SD VIII 4.4 3.8
26 C22 IV PHE 301P CG V 4.7 0.2
27 C23 VIII MET 336P CE IV 3.6 18.2
27 C23 VIII PHE 337P CE1 V 3.7 9.2
27 C23 VIII ILE 340P CD1 IV 3.8 23.6
27 C23 VIII MET 140P CE IV 4.3 3.4
27 C23 VIII MET 336P SD VIII 4.4 1.1*
27 C23 VIII MET 336P CG IV 4.6 0.4
28 C24 IV PHE 298P CZ V 3.8 17.9
28 C24 IV PHE 144P CB IV 3.8 20.4
28 C24 IV PHE 298P CE2 V 4.0 0.7
28 C24 IV ILE 162P CD1 IV 4.1 4.9
28 C24 IV MET 140P O II 4.4 3.4*
28 C24 IV MET 140P C VI 4.6 0.4
29 C25 VIII PHE 337P CE1 V 4.1 10.8
29 C25 VIII LEU 137P CD2 IV 4.2 23.6
29 C25 VIII MET 140P CE IV 4.3 7.6
29 C25 VIII MET 140P CB IV 4.5 4.3
29 C25 VIII LEU 137P O II 4.6 3.8*
29 C25 VIII ALA 141P N III 4.6 0.9
29 C25 VIII ALA 141P CA VII 4.9 0.4
29 C25 VIII ALA 141P CB IV 5.1 1.1
30 C26 IV PHE 144P CE2 V 3.5 17.0
30 C26 IV LEU 180P CD1 IV 3.6 24.7
30 C26 IV PHE 194P CZ V 4.2 7.0
30 C26 IV PHE 144P CZ V 4.4 0.4
30 C26 IV PHE 166P CE1 V 4.7 2.0
30 C26 IV ILE 162P CG2 IV 5.1 1.3
30 C26 IV THR 163P CG2 IV 5.2 3.1
30 C26 IV PHE 166P CD1 V 5.3 0.2
30 C26 IV ILE 162P O II 5.4 0.2*
31 O1 II ILE 162P CD1 IV 3.5 0.3*
31 O1 II PRO 294P CB IV 4.1 1.4*
31 O1 II PHE 298P CD2 V 4.2 1.4
32 O4 II HIS 152O NE2 I 2.8 18.9
32 O4 II TYR 302P CD1 V 3.2 2.3
32 O4 II VAL 161P CG1 IV 3.5 2.9*
33 O5 II HIS 152O NE2 I 3.5 2.3
33 O5 II VAL 161P CG1 IV 3.6 2.8*
33 O5 II TYR 302P CE1 V 3.8 0.2
34 O7 II GLU 295P OE1 II 3.4 1.0*
34 O7 II GLY 158P CA VI 3.5 8.7
34 O7 II MET 154P O II 4.2 0.5*
34 O7 II GLU 295P CD VI 4.4 0.3
34 O7 II GLU 295P OE2 II 4.6 0.2*
34 O7 II TYR 147P CE2 V 4.9 1.0
34 O7 II TYR 147P CD2 V 5.0 0.3
35 O8 I GLU 295P OE1 II 3.1 14.6
35 O8 I GLU 295P OE2 II 3.4 7.6
35 O8 I GLU 295P CD VI 3.6 0.9
35 O8 I ILE 162P CD1 IV 3.6 9.4*
35 O8 I PRO 294P CB IV 3.8 1.2*
35 O8 I PHE 298P CD2 V 3.8 4.0
35 O8 I GLY 158P CA VI 4.9 0.7
35 O8 I PHE 144P CD1 V 5.5 0.3
36 O12 II MET 336P CE IV 3.3 7.6*
37 O14 II ALA 141P N III 4.0 4.5
37 O14 II MET 140P CB IV 4.1 0.3*
------------------------------------------------------------------------
Table V
Complementarity values for the ligand SMA 503P
in PDB entry 2QJK (back to top of page)
---------------------------------------------
Theoretical maximum (Å2) 871
Actual value (Å2) 607
Normalised complementarity 0.70
---------------------------------------------
Table VI
Normalised complementarity as a function of atomic
substitution for ligand SMA 503P
in PDB entry 2QJK (back
to top of page)
Legend:
| N | - ligand atom number in PDB entry |
| Bold
| - indicates atomic
substitution which could stabilize the complex |
| Italics | - indicates atomic
substitution which could destabilize the complex |
|
Ligand atom | Atom class |
|---|
| N | Type | Class | I
| II | III | IV | V |
VI | VII | VIII |
|---|
| 1 | C2
| V |
0.68 |
0.68
|
0.68 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 2 | C3
| V |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 3 | C3M
| IV |
0.64 |
0.60
|
0.63 |
0.70
|
0.70 |
0.70
|
0.68 |
0.65
|
| 4 | C4
| V |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 5 | C4A
| V |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 6 | C5
| V |
0.68 |
0.68
|
0.68 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 7 | C5M
| VIII |
0.67 |
0.62
|
0.67 |
0.69
|
0.75 |
0.75
|
0.75 |
0.70
|
| 8 | C6
| V |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 9 | C7
| V |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 10 | C7M
| VIII |
0.77 |
0.65
|
0.77 |
0.72
|
0.82 |
0.82
|
0.82 |
0.70
|
| 11 | C8
| V |
0.67 |
0.67
|
0.67 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 12 | C8A
| V |
0.68 |
0.68
|
0.68 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 13 | C9
| IV |
0.69 |
0.68
|
0.68 |
0.70
|
0.70 |
0.70
|
0.69 |
0.69
|
| 14 | C10
| IV |
0.67 |
0.67
|
0.67 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 15 | C11
| IV |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 16 | C12
| VIII |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 17 | C13
| IV |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 18 | C14
| VIII |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 19 | C15
| IV |
0.67 |
0.67
|
0.67 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 20 | C16
| IV |
0.69 |
0.69
|
0.68 |
0.70
|
0.70 |
0.70
|
0.68 |
0.70
|
| 21 | C17
| IV |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 22 | C18
| IV |
0.67 |
0.67
|
0.67 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 23 | C19
| IV |
0.69 |
0.69
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 24 | C20
| IV |
0.69 |
0.66
|
0.69 |
0.70
|
0.70 |
0.70
|
0.70 |
0.67
|
| 25 | C21
| IV |
0.63 |
0.58
|
0.63 |
0.70
|
0.70 |
0.70
|
0.70 |
0.65
|
| 26 | C22
| IV |
0.65 |
0.64
|
0.65 |
0.70
|
0.70 |
0.70
|
0.70 |
0.69
|
| 27 | C23
| VIII |
0.59 |
0.59
|
0.59 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 28 | C24
| IV |
0.65 |
0.64
|
0.65 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 29 | C25
| VIII |
0.62 |
0.61
|
0.62 |
0.69
|
0.71 |
0.71
|
0.70 |
0.70
|
| 30 | C26
| IV |
0.63 |
0.63
|
0.63 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 31 | O1
| II |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 32 | O4
| II |
0.70 |
0.70
|
0.70 |
0.66
|
0.70 |
0.70
|
0.70 |
0.70
|
| 33 | O5
| II |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 34 | O7
| II |
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
0.70 |
0.70
|
| 35 | O8
| I |
0.70 |
0.65
|
0.70 |
0.67
|
0.72 |
0.72
|
0.72 |
0.67
|
| 36 | O12
| II |
0.70 |
0.70
|
0.70 |
0.71
|
0.71 |
0.71
|
0.71 |
0.71
|
| 37 | O14
| II |
0.70 |
0.70
|
0.69 |
0.69
|
0.70 |
0.70
|
0.69 |
0.70
|
A short description of the
analytical approach (back to top of page)
The analysis of ligand-protein contacts used in this page
is based upon the surface complementarity approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
The complementarity function
therein is defined as:
Where Sl is the sum of all
surface areas of legitimate atomic contacts between
ligand and receptor, Si is the sum of
all surface areas of illegitimate atomic
contacts, and E is a repulsion term.
Legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
WARNING !!
Atom classes for ligands are automatically
assigned based on the atomic coordinates. However, in
three cases the automatic assignment is
currently ambiguous (due to low resolution). In these
three cases, the user is advised to manually analyze
the full list of contacts (Table IV).
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
IN YOUR STRUCTURE, the following atoms
fall in these ambiguous cases:
Ligand BGL 431
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 1
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 503
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 504
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand BGL 431
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 2
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 503
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 504
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand BGL 431
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 503
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 504
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 505
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand BGL 431
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 503
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 504
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 505
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand BGL 431
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 503
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 504
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 505
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 501
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand HEM 502
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
Ligand SMA 503
1. Carbon (in rings)
1 C2 2 C3 4 C4 5 C4A 12 C8A 5 C4A
6 C5 8 C6 9 C7 11 C8 12 C8A
2. Oxygen ("hydroxy" or "carbonyl")
32 O4 35 O8
Ligand LOP 504
2. Oxygen ("hydroxy" or "carbonyl")
15 O7 34 O8
3. Nitrogen ("hydrophilic")
1 N1
Ligand ANJ 505
1. Carbon (in rings)
13 C2 14 C3 15 C4 16 C5 17 C6 18 C7
2. Oxygen ("hydroxy" or "carbonyl")
1 O1 2 O2 3 O3 5 O5 7 O7 9 O9
3. Nitrogen ("hydrophilic")
10 N1 11 N2
Ligand BGL 257
1. Carbon (in rings)
1 C1 3 C2 5 C3 7 C4 9 C5
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 6 O3 8 O4 12 O6
Ligand HEM 301
1. Carbon (in rings)
5 C1A 6 C2A 7 C3A 8 C4A 15 C1B 16 C2B
17 C3B 18 C4B 22 C1C 23 C2C 24 C3C 25 C4C
29 C1D 30 C2D 31 C3D 32 C4D
2. Oxygen ("hydroxy" or "carbonyl")
13 O1A 14 O2A 37 O1D 38 O2D
3. Nitrogen ("hydrophilic")
39 NA 40 NB 41 NC 42 ND
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