Contacts of ligand 4OL 202D in PDB entry 4ZHH
Ligand-Protein Contacts (LPC) are derived
with the LPC software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
On this page you will find:
- 3D ligand structure presentation with
Jmol, an open-source
Java viewer for chemical structures in 3D (top left window)
- Solvent accessible surface of the ligand
complexed with protein and in uncomplexed form
(top right window). Clicking
on "select" buttons highlights atoms in 3D picture
- List of residues in contact
with the ligand
- List of putative hydrogen
bonds formed by the ligand
- Full list of atomic contacts
formed by the ligand
- Values of ligand complementarity
(a function of atomic contact
surface area and the chemical properties of contacting atoms)
- Prediction of complementarity changes as a
function of atomic substitution
in the
ligand
Table II
Residues in contact with ligand 4OL 202D
in PDB entry 4ZHH (back to top of page)
Legend:
Dist - nearest distance (Å) between atoms of the ligand and the residue
Surf - contact surface area (Å2) between the ligand and the residue
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues contacting ligand by their side chain
(including CA atoms)
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36D LEU* 6.2 0.2 - - - -
40D ALA* 3.6 42.9 + - + +
41D ILE* 3.4 35.2 - - + +
49D GLN* 6.1 1.3 - - - +
52D TYR* 3.6 42.0 + + - -
68D SER* 3.5 27.4 - - - -
70D LEU* 3.9 31.1 - - + +
72D ARG* 6.1 3.4 - - - -
79D TRP* 3.2 92.4 + + + -
81D ARG* 3.6 11.0 - - - -
94D LEU* 4.5 5.4 - - + -
100D TYR* 3.7 36.1 - + + -
103D LEU* 4.9 2.7 - - + -
106D TYR* 2.6 57.0 + + - -
123D PHE* 3.8 31.6 - - + -
125D LYS* 2.9 73.9 + - + -
132D TYR* 3.8 59.8 - + + +
133D PHE 3.9 10.3 - - - +
134D LYS* 3.1 55.9 + - + +
201D SM 2.0 175.1 - - - -
204D CL 3.9 4.5 - - + -
----------------------------------------------------------
Table III
List of putative hydrogen bonds between ligand 4OL 202D
and protein in PDB entry 4ZHH
(back to top
of page)
Legend:
N - ligand atom number in PDB entry
Dist - distance (Å) between the ligand and protein atoms
Surf - contact surface area (Å2) between the ligand and protein atoms
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
18 O55 II TYR 52D OH I 4.1 0.5
25 O47 II LYS 134D NZ III 3.1 4.7
25 O47 II TYR 106D OH I 3.7 2.6
26 N35 I LYS 134D NZ III 4.0 1.0
34 O53 II TRP 79D NE1 III 3.5 6.6
39 O51 II LYS 125D NZ III 3.2 0.7
47 N27 I LYS 125D NZ III 4.4 0.2
49 O49 II LYS 125D NZ III 2.9 5.9
50 N9 I LYS 134D NZ III 4.5 0.2
51 O8 II ALA 40D N III 4.3 2.9
53 O9 II TYR 106D OH I 2.6 19.6
54 O10 I LYS 134D NZ III 3.5 2.6
------------------------------------------------------------------------
Table IV
Full list of atomic contacts with ligand 4OL 202D
in PDB entry 4ZHH (back
to top of page)
Total number of contacts is 129
Legend:
N - ligand atom number in PDB entry
Dist - distance (A) between the ligand and protein atoms
Surf - contact surface area (A**2) between the ligand and protein atoms
* - indicates destabilizing contacts
------------------------------------------------------------------------
Ligand atom Protein atom
----------------- ---------------------------- Dist Surf
N Name Class Residue Name Class
------------------------------------------------------------------------
1 C1 VI LYS 134D CD IV 4.1 2.9
1 C1 VI LYS 134D CB IV 4.2 2.2
2 C2 V LYS 134D CD IV 3.8 3.4
3 C6 V LYS 125D CB IV 3.8 14.8
3 C6 V PHE 123D O II 3.9 17.7
3 C6 V TYR 132D O II 3.9 4.5
3 C6 V PHE 123D CB IV 4.0 1.6
3 C6 V PHE 123D C VI 4.1 0.2
4 C5 V TYR 106D OH I 3.7 8.3
4 C5 V TYR 106D CE2 V 3.8 11.0
4 C5 V PHE 123D CB IV 3.8 12.1
4 C5 V LYS 125D CB IV 3.8 6.1
5 C4 V SM 201D SM VI 3.0 2.0
5 C4 V TYR 106D OH I 3.5 0.4
5 C4 V LYS 134D CE VII 3.7 6.7
6 C7 V LYS 134D CG IV 3.8 8.7
6 C7 V TYR 132D CB IV 3.8 13.5
6 C7 V PHE 133D C VI 3.9 7.2
7 C12 VI ILE 41D CD1 IV 3.4 28.7
7 C12 VI ILE 41D CG1 IV 3.9 2.7
7 C12 VI ALA 40D O II 3.9 3.1
7 C12 VI LYS 134D CD IV 4.8 0.7
7 C12 VI LEU 36D CD2 IV 6.2 0.2
8 C13 IV ALA 40D O II 3.8 13.7*
8 C13 IV ILE 41D CD1 IV 4.2 3.1
9 C14 VI ILE 41D CD1 IV 5.1 0.4
9 C14 VI LYS 134D NZ III 5.8 0.2
12 C18 IV GLN 49D OE1 II 6.1 1.3*
13 C20 VI LEU 70D CD2 IV 4.4 8.3
13 C20 VI ARG 72D NH2 III 6.1 3.4
14 C23 V ALA 40D CB IV 4.6 4.5
15 C24 V TYR 132D CD2 V 4.0 20.0
15 C24 V TYR 132D CE2 V 4.0 5.2
15 C24 V TYR 132D CZ V 4.2 3.6
15 C24 V ALA 40D CB IV 4.5 0.7
16 C25 V LYS 125D CE VII 3.6 16.2
16 C25 V TYR 132D CD1 V 4.0 9.6
16 C25 V LYS 125D NZ III 4.0 0.2
16 C25 V TYR 132D CB IV 4.3 0.2
17 C26 V LYS 125D NZ III 3.6 5.8
18 O55 II LEU 70D CD2 IV 3.9 7.1*
18 O55 II TYR 52D CE1 V 4.0 11.1
18 O55 II TYR 52D CZ V 4.1 0.3
18 O55 II TYR 52D OH I 4.1 0.5
19 C28 VI LEU 70D CD2 IV 4.2 2.5
20 C34 V TYR 52D OH I 4.1 2.9
21 C39 V TYR 52D CE2 V 3.6 13.7
21 C39 V TYR 52D CD2 V 4.3 2.0
21 C39 V LEU 70D CD2 IV 4.5 5.4
21 C39 V SER 68D CB VI 4.5 2.9
22 C38 V SER 68D OG I 3.5 22.2
22 C38 V TYR 52D CE2 V 3.6 11.4
22 C38 V SER 68D CB VI 3.9 2.2
22 C38 V CL 204D CL IV 3.9 0.7
22 C38 V TRP 79D CE3 V 4.0 2.5
23 C37 V TRP 79D CZ3 V 3.5 13.7
23 C37 V ARG 81D NH2 III 3.6 11.0
23 C37 V LYS 134D NZ III 3.8 7.4
23 C37 V CL 204D CL IV 3.9 3.8
24 C36 V SM 201D SM VI 3.2 1.1
24 C36 V LYS 134D NZ III 3.4 6.3
24 C36 V TRP 79D CZ3 V 3.6 1.8
25 O47 II SM 201D SM VI 2.5 17.8
25 O47 II LYS 134D NZ III 3.1 4.7
25 O47 II TRP 79D CZ3 V 3.5 4.5
25 O47 II TYR 106D OH I 3.7 2.6
26 N35 I SM 201D SM VI 3.1 0.2
26 N35 I LYS 134D NZ III 4.0 1.0
27 O46 I SM 201D SM VI 2.4 22.5
30 C30 IV TRP 79D CE3 V 4.4 1.6
30 C30 IV TRP 79D CB IV 4.5 3.8
30 C30 IV LEU 70D CD2 IV 4.8 6.5
30 C30 IV LEU 70D CD1 IV 5.1 1.3
31 C31 VI TRP 79D CG V 3.8 12.8
31 C31 VI TRP 79D CB IV 4.0 2.7
31 C31 VI TRP 79D CD1 V 4.4 0.2
32 N32 I TRP 79D CD2 V 3.4 4.0
33 C33 VI TRP 79D CE2 V 3.4 6.1
34 O53 II TRP 79D NE1 III 3.5 6.6
34 O53 II TRP 79D CD1 V 3.8 1.7
34 O53 II TYR 100D CE2 V 5.4 0.2
35 C40 V TRP 79D CZ2 V 3.2 4.0
35 C40 V LYS 125D NZ III 5.0 0.2
36 N45 I TRP 79D CH2 V 3.3 1.4
37 O50 I SM 201D SM VI 2.3 23.4
38 C44 V SM 201D SM VI 3.1 0.2
38 C44 V LYS 125D NZ III 3.3 7.2
38 C44 V TRP 79D CH2 V 3.6 6.3
38 C44 V TYR 106D CE2 V 4.1 0.2
39 O51 II SM 201D SM VI 2.2 23.2
39 O51 II LYS 125D NZ III 3.2 0.7
39 O51 II TYR 106D CE2 V 3.5 1.2
40 C43 V LYS 125D NZ III 3.2 14.4
40 C43 V TRP 79D CH2 V 3.9 4.5
40 C43 V TYR 106D CE2 V 3.9 12.1
40 C43 V LYS 125D CD IV 4.3 0.4
40 C43 V TYR 106D CD2 V 4.4 1.6
40 C43 V LEU 94D CD2 IV 4.6 2.5
40 C43 V LEU 103D CD2 IV 4.9 2.2
41 C42 V TRP 79D CZ2 V 3.6 5.6
41 C42 V TYR 100D CD2 V 3.7 17.9
41 C42 V TYR 100D CE2 V 3.9 0.9
41 C42 V LYS 125D NZ III 4.2 1.3
41 C42 V TYR 100D CG V 4.3 2.9
41 C42 V LEU 94D CD2 IV 4.5 2.9
41 C42 V TYR 100D CB IV 4.8 2.2
41 C42 V LEU 103D CD2 IV 4.9 0.4
42 C41 V TRP 79D CZ2 V 3.2 8.1
42 C41 V TRP 79D CE2 V 3.6 0.7
42 C41 V TYR 100D CE2 V 3.9 10.3
42 C41 V TYR 100D CD2 V 3.9 1.6
47 N27 I LYS 125D NZ III 4.4 0.2
48 O48 I SM 201D SM VI 2.0 28.6
49 O49 II SM 201D SM VI 2.5 17.0
49 O49 II LYS 125D NZ III 2.9 5.9
49 O49 II LYS 125D CE VII 3.1 0.5
50 N9 I LYS 134D CD IV 3.8 6.7*
50 N9 I LYS 134D NZ III 4.5 0.2
51 O8 II ALA 40D CB IV 3.6 18.0*
51 O8 II TYR 132D CB IV 4.1 3.3*
51 O8 II ALA 40D N III 4.3 2.9
51 O8 II PHE 133D O II 4.4 3.1*
51 O8 II LYS 134D CB IV 4.5 0.2*
51 O8 II ILE 41D CG1 IV 5.3 0.2*
52 N3 I LYS 134D CE VII 3.6 2.0
53 O9 II SM 201D SM VI 2.4 16.3
53 O9 II TYR 106D OH I 2.6 19.6
54 O10 I SM 201D SM VI 2.2 22.7
54 O10 I LYS 134D NZ III 3.5 2.6
------------------------------------------------------------------------
Table V
Complementarity values for the ligand 4OL 202D
in PDB entry 4ZHH (back to top of page)
---------------------------------------------
Theoretical maximum (Å2) 812
Actual value (Å2) 692
Normalised complementarity 0.85
---------------------------------------------
Table VI
Normalised complementarity as a function of atomic
substitution for ligand 4OL 202D
in PDB entry 4ZHH (back
to top of page)
Legend:
| N | - ligand atom number in PDB entry |
| Bold
| - indicates atomic
substitution which could stabilize the complex |
| Italics | - indicates atomic
substitution which could destabilize the complex |
|
Ligand atom | Atom class |
|---|
| N | Type | Class | I
| II | III | IV | V |
VI | VII | VIII |
|---|
| 1 | C1
| VI |
0.84 |
0.84
|
0.84 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 2 | C2
| V |
0.84 |
0.84
|
0.84 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 3 | C6
| V |
0.81 |
0.76
|
0.81 |
0.80
|
0.85 |
0.85
|
0.85 |
0.80
|
| 4 | C5
| V |
0.81 |
0.81
|
0.81 |
0.83
|
0.85 |
0.85
|
0.85 |
0.85
|
| 5 | C4
| V |
0.85 |
0.85
|
0.84 |
0.85
|
0.85 |
0.85
|
0.84 |
0.85
|
| 6 | C7
| V |
0.80 |
0.80
|
0.80 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 7 | C12
| VI |
0.77 |
0.76
|
0.77 |
0.84
|
0.85 |
0.85
|
0.85 |
0.84
|
| 8 | C13
| IV |
0.88 |
0.84
|
0.88 |
0.85
|
0.89 |
0.89
|
0.89 |
0.85
|
| 9 | C14
| VI |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 12 | C18
| IV |
0.86 |
0.85
|
0.86 |
0.85
|
0.86 |
0.86
|
0.86 |
0.85
|
| 13 | C20
| VI |
0.83 |
0.83
|
0.82 |
0.84
|
0.85 |
0.85
|
0.84 |
0.85
|
| 14 | C23
| V |
0.84 |
0.84
|
0.84 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 15 | C24
| V |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 16 | C25
| V |
0.85 |
0.85
|
0.81 |
0.85
|
0.85 |
0.85
|
0.81 |
0.85
|
| 17 | C26
| V |
0.85 |
0.85
|
0.84 |
0.84
|
0.85 |
0.85
|
0.84 |
0.85
|
| 18 | O55
| II |
0.85 |
0.85
|
0.85 |
0.87
|
0.87 |
0.87
|
0.87 |
0.87
|
| 19 | C28
| VI |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 20 | C34
| V |
0.85 |
0.85
|
0.85 |
0.84
|
0.85 |
0.85
|
0.85 |
0.85
|
| 21 | C39
| V |
0.84 |
0.84
|
0.84 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 22 | C38
| V |
0.85 |
0.85
|
0.85 |
0.80
|
0.85 |
0.85
|
0.85 |
0.85
|
| 23 | C37
| V |
0.84 |
0.84
|
0.80 |
0.81
|
0.85 |
0.85
|
0.81 |
0.85
|
| 24 | C36
| V |
0.85 |
0.85
|
0.84 |
0.84
|
0.85 |
0.85
|
0.84 |
0.85
|
| 25 | O47
| II |
0.85 |
0.85
|
0.84 |
0.83
|
0.85 |
0.85
|
0.84 |
0.85
|
| 26 | N35
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 27 | O46
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 30 | C30
| IV |
0.82 |
0.82
|
0.82 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 31 | C31
| VI |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 32 | N32
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 33 | C33
| VI |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 34 | O53
| II |
0.85 |
0.85
|
0.84 |
0.84
|
0.85 |
0.85
|
0.84 |
0.85
|
| 35 | C40
| V |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 36 | N45
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 37 | O50
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 38 | C44
| V |
0.85 |
0.85
|
0.83 |
0.83
|
0.85 |
0.85
|
0.83 |
0.85
|
| 39 | O51
| II |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 40 | C43
| V |
0.84 |
0.84
|
0.80 |
0.82
|
0.85 |
0.85
|
0.82 |
0.85
|
| 41 | C42
| V |
0.84 |
0.84
|
0.83 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 42 | C41
| V |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 47 | N27
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 48 | O48
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 49 | O49
| II |
0.85 |
0.85
|
0.84 |
0.84
|
0.85 |
0.85
|
0.84 |
0.85
|
| 50 | N9
| I |
0.85 |
0.85
|
0.85 |
0.87
|
0.87 |
0.87
|
0.87 |
0.87
|
| 51 | O8
| II |
0.86 |
0.85
|
0.85 |
0.90
|
0.91 |
0.91
|
0.91 |
0.91
|
| 52 | N3
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
| 53 | O9
| II |
0.85 |
0.85
|
0.85 |
0.80
|
0.85 |
0.85
|
0.85 |
0.85
|
| 54 | O10
| I |
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
0.85 |
0.85
|
A short description of the
analytical approach (back to top of page)
The analysis of ligand-protein contacts used in this page
is based upon the surface complementarity approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
The complementarity function
therein is defined as:
Where Sl is the sum of all
surface areas of legitimate atomic contacts between
ligand and receptor, Si is the sum of
all surface areas of illegitimate atomic
contacts, and E is a repulsion term.
Legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
WARNING !!
Atom classes for ligands are automatically
assigned based on the atomic coordinates. However, in
three cases the automatic assignment is
currently ambiguous (due to low resolution). In these
three cases, the user is advised to manually analyze
the full list of contacts (Table IV).
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
IN YOUR STRUCTURE, the following atoms
fall in these ambiguous cases:
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Ligand GOL 204
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 4 O2 6 O3
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Ligand GOL 203
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 4 O2 6 O3
Ligand GOL 205
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 4 O2 6 O3
Ligand GOL 206
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 4 O2 6 O3
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Ligand GOL 205
2. Oxygen ("hydroxy" or "carbonyl")
2 O1 4 O2 6 O3
Ligand 4OL 202
1. Carbon (in rings)
2 C2 6 C7 3 C6 4 C5 5 C4 14 C23
15 C24 16 C25 17 C26 46 C22 20 C34 21 C39
22 C38 23 C37 24 C36 35 C40 38 C44 40 C43
41 C42 42 C41
2. Oxygen ("hydroxy" or "carbonyl")
18 O55 25 O47 34 O53 39 O51 45 O54 49 O49
51 O8 53 O9
3. Nitrogen ("hydrophilic")
26 N35 28 N21 32 N32 36 N45 44 N15 47 N27
50 N9 52 N3
Please E-mail any questions and/or suggestions
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Vladimir.Sobolev@weizmann.ac.il