Contacts of the helix formed by residues 63 - 125 (chain B) in PDB entry 2O94
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 63 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ALA* 1.3 80.8 - - - +
64B PRO* 1.3 77.1 - - + +
65B ALA 3.2 0.7 - - - -
66B LEU* 2.7 29.4 + - - +
67B ARG* 2.7 39.3 + - + +
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Residues in contact with PRO 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ALA* 5.3 0.4 - - + -
63B GLU* 1.3 100.8 - - + +
65B ALA* 1.3 52.9 + - - +
66B LEU 2.7 2.8 + - - -
67B ARG* 2.8 9.6 + - + +
68B GLU* 2.7 37.7 + - - +
118D MET* 5.0 2.3 - - + +
122D LYS* 4.0 43.7 - - + +
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Residues in contact with ALA 65 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ALA* 4.1 18.8 - - + -
63B GLU 3.2 0.2 - - - -
64B PRO* 1.3 78.3 - - - +
66B LEU* 1.3 60.0 + - + +
68B GLU* 3.9 17.7 - - - +
69B GLN* 3.5 22.7 + - - +
72B GLN* 5.5 0.2 - - - +
122D LYS* 5.8 1.3 - - - +
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Residues in contact with LEU 66 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ALA* 3.7 41.7 - - + +
63B GLU* 2.7 16.1 + - - +
65B ALA* 1.3 82.1 - - + +
67B ARG* 1.3 51.9 - - + +
68B GLU 3.0 1.1 - - - -
69B GLN* 3.0 16.0 + - - +
70B GLN* 2.7 33.6 + - - +
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Residues in contact with ARG 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B GLU* 2.7 41.2 + - + +
64B PRO* 3.6 9.4 - - + +
66B LEU* 1.3 73.9 - - + +
68B GLU* 1.3 62.4 + - - +
70B GLN* 3.3 36.2 + - - +
71B LEU* 3.4 14.6 + - - +
118D MET* 4.4 15.7 - - + +
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Residues in contact with GLU 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B PRO 2.7 15.6 + - - +
65B ALA* 3.9 16.2 - - - +
67B ARG* 1.3 76.4 - - - +
69B GLN* 1.3 65.0 + - - +
70B GLN 3.0 1.0 + - - -
71B LEU* 3.1 6.1 + - - +
72B GLN* 3.0 46.1 + - + +
118D MET* 3.2 31.8 - - + +
119D LEU* 4.3 7.3 - - - +
122D LYS* 4.0 19.7 + - - +
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Residues in contact with GLN 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B ALA 3.5 14.8 + - - +
66B LEU* 3.0 18.8 + - - +
68B GLU* 1.3 76.9 - - - +
70B GLN* 1.3 67.7 + - - +
72B GLN* 3.4 17.0 + - + +
73B GLN* 3.0 53.7 + - + +
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Residues in contact with GLN 70 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B LEU 2.7 16.1 + - - +
67B ARG* 3.3 35.2 + - - +
68B GLU 3.0 0.4 + - - -
69B GLN* 1.3 76.2 - - - +
71B LEU* 1.3 54.5 + - + +
73B GLN* 3.1 6.4 + - - +
74B GLU* 2.6 57.8 + - - +
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Residues in contact with LEU 71 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B ARG 3.9 6.3 - - - +
68B GLU* 3.1 7.0 + - - +
70B GLN* 1.3 77.1 - - + +
72B GLN* 1.3 68.8 + - + +
73B GLN 2.9 1.8 - - - -
74B GLU* 2.7 28.0 + - + +
75B LEU* 2.6 29.7 + - - +
111D HIS* 4.6 16.2 - - + +
114D GLN* 4.1 20.4 - - + -
115D GLN* 3.4 44.0 - - + +
118D MET* 4.1 21.5 - - + -
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Residues in contact with GLN 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B GLU* 3.0 42.1 + - + +
69B GLN* 3.4 24.5 + - + +
71B LEU* 1.3 76.2 - - + +
73B GLN* 1.3 62.5 + - + +
75B LEU* 3.9 10.4 - - - +
76B LEU* 3.4 24.4 + - - +
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Residues in contact with GLN 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B GLN* 3.0 48.1 + - + +
70B GLN* 3.1 4.6 + - - +
71B LEU 2.9 0.6 - - - -
72B GLN* 1.3 76.8 - - + +
74B GLU* 1.3 67.4 + - - +
75B LEU 3.2 0.4 - - - -
76B LEU* 3.3 8.5 + - - +
77B ALA* 3.0 22.9 + - - +
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Residues in contact with GLU 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B GLN* 2.6 47.0 + - - +
71B LEU* 2.7 37.5 + - + +
73B GLN* 1.3 71.3 - - - +
75B LEU* 1.3 57.0 + - - +
77B ALA* 3.0 23.7 - - - +
78B LEU* 3.0 10.2 + - - +
111D HIS* 4.9 4.3 - - + -
114D GLN* 6.0 0.5 - - - +
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Residues in contact with LEU 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B LEU 2.6 14.5 + - - +
72B GLN* 3.9 9.2 - - - +
74B GLU* 1.3 68.8 - - - +
76B LEU* 1.3 55.2 + - - +
77B ALA 2.6 6.0 + - - -
78B LEU* 2.4 35.9 + - + +
79B LYS* 3.1 5.9 + - - +
109C HIS* 3.7 42.2 + - + +
112C ILE* 4.4 14.4 - - + -
108D LEU* 4.3 9.9 - - + -
111D HIS* 3.0 51.1 + - + +
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Residues in contact with LEU 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B GLN 3.4 16.2 + - - +
73B GLN* 3.3 8.2 + - - +
75B LEU* 1.3 79.2 - - + +
77B ALA* 1.3 57.6 + - - +
79B LYS* 4.2 15.3 - - + +
80B GLN* 3.5 24.5 + - + +
109C HIS* 5.7 2.2 - - - -
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Residues in contact with ALA 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B GLN 3.0 11.9 + - - +
74B GLU* 3.0 17.3 - - - +
75B LEU 2.6 5.1 + - - -
76B LEU* 1.3 76.8 - - - +
78B LEU* 1.3 61.6 + - - -
79B LYS 3.2 0.7 - - - -
80B GLN* 3.4 8.1 + - - +
81B LYS* 3.2 21.7 + - - +
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Residues in contact with LEU 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74B GLU 3.0 9.7 + - - +
75B LEU* 2.4 29.2 + - + +
77B ALA* 1.3 72.5 - - - +
79B LYS* 1.3 59.3 + - - +
81B LYS* 3.5 16.8 + - + +
82B GLN* 3.1 32.2 + - - +
109C HIS* 6.2 0.7 - - + -
107D GLN* 4.1 29.6 - - + +
108D LEU* 3.9 46.9 - - + +
111D HIS* 4.8 10.3 - - + -
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Residues in contact with LYS 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B LEU 3.1 10.1 + - - +
76B LEU* 4.3 15.7 - - + +
78B LEU* 1.3 74.8 - - - +
80B GLN* 1.3 60.2 + - + +
82B GLN* 3.3 6.1 + - - +
83B GLN* 2.7 51.4 + - + +
102C ARG* 5.4 14.2 - - - +
105C GLU* 3.6 37.3 + - - +
109C HIS* 4.9 15.8 - - + +
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Residues in contact with GLN 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B LEU* 3.5 22.2 - - + +
77B ALA* 3.4 12.0 + - - +
79B LYS* 1.3 83.3 - - + +
81B LYS* 1.3 67.2 + - - +
83B GLN* 3.4 9.1 + - - +
84B ILE* 3.1 31.6 + - + +
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Residues in contact with LYS 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B ALA 3.2 8.9 + - - +
78B LEU* 3.5 22.1 - - + +
80B GLN* 1.3 77.7 - - - +
82B GLN* 1.3 51.6 + - + +
84B ILE* 2.9 12.1 + - - +
85B GLN* 2.7 54.4 + - + +
107D GLN* 3.8 23.4 - - - +
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Residues in contact with GLN 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B LEU* 3.1 30.2 + - + +
79B LYS* 3.7 2.8 - - - +
81B LYS* 1.3 78.6 - - + +
83B GLN* 1.3 63.5 + - - +
84B ILE 3.0 0.2 + - - -
85B GLN* 3.1 3.6 + - - +
86B ARG* 2.9 34.2 + - - +
105C GLU* 4.1 13.7 + - - +
109C HIS* 6.1 0.8 - - - -
104D HIS* 2.9 77.4 - - + +
107D GLN* 3.6 9.9 - - - +
108D LEU* 3.8 23.3 - - - +
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Residues in contact with GLN 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B LYS* 2.7 37.5 + - + +
80B GLN* 3.7 9.6 - - - +
82B GLN* 1.3 72.9 - - - +
84B ILE* 1.3 63.0 + - + +
86B ARG* 3.7 17.0 - - - +
87B GLN* 3.5 31.9 + - - +
98C GLU* 2.7 38.3 + - - +
102C ARG* 3.8 23.9 + - - +
105C GLU* 5.6 0.4 - - - +
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Residues in contact with ILE 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B GLN* 3.1 18.9 + - + +
81B LYS* 2.9 10.2 + - - +
83B GLN* 1.3 81.7 - - + +
85B GLN* 1.3 69.6 + - - +
86B ARG 3.1 1.3 - - - -
87B GLN* 2.6 31.5 + - + +
88B ILE* 3.0 27.6 + - + +
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Residues in contact with GLN 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B LYS* 2.7 47.4 + - + +
82B GLN* 3.5 8.2 + - - +
84B ILE* 1.3 71.7 - - - +
86B ARG* 1.3 57.3 + - - +
88B ILE* 2.8 34.8 + - + +
89B LEU* 2.9 12.5 + - - +
100D LEU* 3.6 25.9 - - + +
103D GLN* 4.0 10.9 - - - +
104D HIS* 3.5 22.1 + - - +
107D GLN* 5.1 2.2 + - - +
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Residues in contact with ARG 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B GLN* 2.9 20.2 + - - +
83B GLN* 3.7 21.5 - - - +
85B GLN* 1.3 74.3 - - - +
87B GLN* 1.3 57.9 + - - +
89B LEU* 3.1 5.4 + - - +
90B ILE* 3.0 31.2 + - - +
97C PHE* 3.5 28.6 - - + -
98C GLU* 3.2 29.3 + - - +
101C SER* 3.0 36.2 + - - +
102C ARG* 5.8 0.4 - - - +
105C GLU* 3.4 26.9 + - - +
100D LEU* 4.1 11.4 - - + +
104D HIS* 3.4 29.2 + - + +
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Residues in contact with GLN 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B GLN* 3.5 37.7 + - - +
84B ILE* 2.6 30.0 + - + +
86B ARG* 1.3 72.9 - - - +
88B ILE* 1.3 55.8 + - + -
90B ILE* 3.5 6.5 + - - +
91B ALA* 2.9 30.1 + - - +
94C GLN* 4.9 11.6 + - - +
98C GLU* 4.5 5.5 - - - +
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Residues in contact with ILE 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B ILE* 3.0 26.9 + - + +
85B GLN* 2.8 20.6 + - + +
87B GLN* 1.3 74.6 - - + +
89B LEU* 1.3 58.6 - - - +
91B ALA* 3.3 4.9 + - + +
92B GLU* 2.8 42.7 + - + +
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Residues in contact with LEU 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B GLN 2.9 9.4 + - - +
86B ARG* 3.2 11.9 - - - +
88B ILE* 1.3 77.7 - - - +
90B ILE* 1.3 58.2 + - - +
92B GLU* 3.2 24.9 - - - +
93B PHE* 3.0 25.5 + - - +
97C PHE* 4.4 11.2 - - + -
93D PHE* 4.0 21.3 - - + -
96D GLN* 3.8 33.7 - - + +
97D PHE* 4.0 28.9 - - + -
100D LEU* 4.3 15.7 - - + -
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Residues in contact with ILE 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B ARG 3.0 13.4 + - - +
87B GLN* 3.8 7.0 - - - +
89B LEU* 1.3 74.2 - - + +
91B ALA* 1.3 56.4 + - - +
93B PHE* 3.0 8.9 + - + +
94B GLN* 2.7 37.1 + - + +
90C ILE* 5.5 7.4 - - + -
93C PHE* 3.4 39.0 - - + -
94C GLN* 3.9 31.9 - - + +
97C PHE* 3.6 26.9 - - + -
93D PHE* 4.0 13.7 - - + -
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Residues in contact with ALA 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B GLN 2.9 21.9 + - - +
88B ILE* 3.8 5.4 - - + +
90B ILE* 1.3 74.6 - - - +
92B GLU* 1.3 63.7 + - - +
94B GLN* 3.2 10.1 - - - +
95B ARG* 3.0 23.7 + - - +
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Residues in contact with GLU 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88B ILE* 2.8 23.2 + - + +
89B LEU* 3.2 19.7 - - - +
91B ALA* 1.3 80.2 - - - +
93B PHE* 1.3 63.1 + - - +
95B ARG* 3.2 9.8 + - - +
96B GLN* 3.1 36.6 + - - +
93D PHE* 6.1 0.2 - - - -
96D GLN* 2.6 36.7 + - - +
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Residues in contact with PHE 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A PHE* 3.6 30.1 - + - -
97A PHE* 5.3 0.2 - + - -
89B LEU 3.0 7.6 + - - +
90B ILE* 3.0 12.1 + - + +
92B GLU* 1.3 72.7 + - - +
94B GLN* 1.3 70.1 + - - +
96B GLN* 3.0 10.6 + - + +
97B PHE* 2.8 33.2 + + + +
90C ILE* 3.4 33.9 - - + -
93C PHE* 5.8 2.7 - + - -
89D LEU* 4.0 35.7 - - + -
90D ILE* 4.1 8.7 - - + -
92D GLU* 6.0 0.7 - - - -
93D PHE* 3.2 58.6 - + + -
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Residues in contact with GLN 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B ILE* 2.7 19.3 + - + +
91B ALA* 3.2 16.2 - - - +
93B PHE* 1.3 74.8 - - - +
95B ARG* 1.3 62.4 + - - +
97B PHE* 2.9 31.0 + - - +
98B GLU* 3.0 26.1 + - - +
87C GLN* 4.9 12.9 - - - +
90C ILE* 3.9 33.6 - - + +
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Residues in contact with ARG 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91B ALA 3.0 11.7 + - - +
92B GLU* 3.2 12.1 + - - +
94B GLN* 1.3 77.4 + - - +
96B GLN* 1.3 82.4 + - - +
97B PHE 2.7 11.0 + - - -
98B GLU* 3.2 4.0 + - - +
99B GLN* 3.0 51.0 + - + +
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Residues in contact with GLN 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B GLU* 3.1 33.5 + - - +
93B PHE* 3.0 11.0 + - - +
95B ARG* 1.3 96.5 - - - +
97B PHE* 1.3 59.4 + - - +
99B GLN* 4.0 14.6 + - - +
100B LEU* 3.4 21.0 + - - +
89D LEU* 3.8 21.0 - - + +
92D GLU* 2.7 37.4 + - - +
96D GLN* 4.7 4.6 + - - +
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Residues in contact with PHE 97 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A PHE* 2.8 40.6 - + - -
100A LEU* 5.9 0.2 - - + -
93B PHE* 2.8 24.3 + + + +
94B GLN* 2.9 19.3 - - - +
95B ARG 2.7 2.4 + - - -
96B GLN* 1.3 77.3 - - - +
98B GLU* 1.3 67.1 + - - -
99B GLN 3.1 1.3 - - - -
100B LEU* 3.5 2.5 + - + +
101B SER* 3.0 34.2 + - - -
86C ARG* 3.6 44.9 - - + -
89C LEU* 4.4 9.9 - - + -
90C ILE* 3.5 28.5 - - + -
89D LEU* 3.9 16.4 - - + -
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Residues in contact with GLU 98 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B GLN* 3.0 24.3 + - - +
95B ARG* 4.3 3.4 - - - +
97B PHE* 1.3 81.1 - - - +
99B GLN* 1.3 54.6 + - - +
101B SER* 3.3 4.8 + - - -
102B ARG* 2.7 69.1 + - + +
83C GLN* 3.7 28.0 - - - +
86C ARG* 3.2 37.7 + - - +
87C GLN* 4.4 11.8 - - - +
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Residues in contact with GLN 99 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95B ARG* 3.0 48.9 + - + +
96B GLN* 4.0 12.9 + - - +
98B GLU* 1.3 74.5 - - - +
100B LEU* 1.3 68.5 + - - +
102B ARG* 3.1 7.8 + - - +
103B GLN* 3.0 43.5 + - + +
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Residues in contact with LEU 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A PHE* 5.9 0.2 - - + -
96B GLN 3.4 16.6 + - - +
97B PHE* 3.9 3.6 - - + +
99B GLN* 1.3 78.6 - - - +
101B SER* 1.3 54.2 + - - +
103B GLN* 2.8 32.5 + - - +
104B HIS* 2.7 71.8 + - + +
85D GLN* 3.6 16.6 - - + +
86D ARG* 4.1 25.1 - - + +
89D LEU* 4.3 19.3 - - + -
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Residues in contact with SER 101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B PHE* 3.0 23.9 + - - -
98B GLU* 3.4 8.1 - - - -
100B LEU* 1.3 79.2 - - - +
102B ARG* 1.3 56.8 + - - +
104B HIS* 4.2 6.1 - - - +
105B GLU* 3.1 30.3 + - - +
86C ARG* 3.0 49.6 + - - +
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Residues in contact with ARG 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B GLU* 2.7 48.8 + - + +
99B GLN* 3.7 4.9 - - - +
101B SER* 1.3 72.0 - - - +
103B GLN* 1.3 67.9 + - + +
105B GLU* 3.6 11.7 - - - +
106B ALA* 3.0 22.5 + - - +
79C LYS* 5.5 12.1 - - - +
83C GLN* 2.7 37.7 + - - +
86C ARG* 5.7 0.7 - - - +
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Residues in contact with GLN 103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B GLN* 3.0 37.7 + - + +
100B LEU* 2.8 30.0 + - - +
102B ARG* 1.3 76.9 - - + +
104B HIS* 1.3 73.7 + - + +
105B GLU 2.8 1.6 + - - -
106B ALA* 2.9 11.9 + - - +
107B GLN* 3.1 20.3 + - + +
85D GLN* 4.7 5.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B LEU* 2.7 61.7 + - + +
101B SER* 4.2 5.3 + - - +
103B GLN* 1.3 75.3 - - + +
105B GLU* 1.3 63.9 + - - +
107B GLN* 3.2 11.8 + - - +
108B LEU* 2.9 21.4 + - + +
82D GLN* 2.9 64.7 - - + +
85D GLN* 3.6 18.8 - - + +
86D ARG* 3.5 21.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 4.5 12.6 - - + -
101B SER 3.1 16.5 + - - +
102B ARG* 3.6 11.2 - - - +
103B GLN 2.8 1.6 + - - -
104B HIS* 1.3 77.7 - - - +
106B ALA* 1.3 66.9 + - - +
108B LEU* 2.7 22.2 + - - +
109B HIS* 2.8 29.0 + - + +
79C LYS* 3.5 44.4 - - - +
82C GLN* 3.8 13.0 + - - +
86C ARG* 3.5 23.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B ARG 3.0 14.1 + - - +
103B GLN* 2.9 9.5 + - - +
105B GLU* 1.3 76.0 + - - +
107B GLN* 1.3 53.4 + - + +
109B HIS* 3.1 9.8 + - - +
110B GLU* 2.7 35.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 107 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B GLN* 3.1 18.8 + - + +
104B HIS* 3.2 17.8 - - - +
105B GLU 2.9 0.4 + - - -
106B ALA* 1.3 76.3 - - + +
108B LEU* 1.3 57.6 + - - +
110B GLU* 2.7 40.0 + - - +
111B HIS* 2.9 12.6 + - - +
78D LEU* 4.3 26.2 - - + +
81D LYS* 4.3 20.7 + - - +
82D GLN* 3.7 18.2 - - - +
85D GLN* 5.2 2.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 108 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A GLU* 4.6 16.2 - - + -
108A LEU* 4.0 39.6 - - + +
109A HIS* 4.1 25.1 - - + +
112A ILE* 4.8 5.4 - - + -
104B HIS* 2.9 9.7 + - + +
105B GLU* 2.7 16.7 + - - +
107B GLN* 1.3 72.5 - - - +
109B HIS* 1.3 59.4 + - - +
111B HIS* 3.6 4.5 - - + +
112B ILE* 3.5 20.6 + - - +
75D LEU* 4.3 9.4 - - + -
78D LEU* 3.7 22.4 - - + +
82D GLN* 3.9 21.1 - - - +
----------------------------------------------------------
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Residues in contact with HIS 109 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 3.6 31.3 - - + +
105B GLU* 2.8 31.8 + - + +
106B ALA* 3.4 11.2 - - - +
108B LEU* 1.3 71.9 - - - +
110B GLU* 1.3 59.6 + - - +
111B HIS 3.1 1.6 - - - -
112B ILE* 2.7 29.1 + - + +
113B LYS* 2.9 13.5 + - - +
75C LEU* 3.7 34.0 - - + +
76C LEU* 5.6 0.8 + - - -
78C LEU* 6.0 0.7 - - + -
79C LYS* 4.6 22.1 - - + +
----------------------------------------------------------
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Residues in contact with GLU 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B ALA 2.7 16.5 + - - +
107B GLN* 2.7 26.5 + - - +
109B HIS* 1.3 70.2 - - - +
111B HIS* 1.3 60.8 - - - -
113B LYS* 3.0 23.4 + - - +
114B GLN* 3.2 42.4 + - + +
78D LEU* 5.8 2.1 - - - +
----------------------------------------------------------
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Residues in contact with HIS 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A ILE* 3.0 26.1 - - + +
107B GLN 2.9 9.6 + - - +
108B LEU* 3.6 14.1 - - - +
110B GLU* 1.3 76.5 - - - +
112B ILE* 1.3 57.5 + - - +
114B GLN* 3.0 9.0 + - - +
115B GLN* 2.8 41.9 + - + +
71D LEU* 3.6 27.5 + - + +
74D GLU* 4.9 6.5 - - + -
75D LEU* 3.0 60.3 - - + +
78D LEU* 5.3 8.7 - - + -
----------------------------------------------------------
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Residues in contact with ILE 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 4.5 7.4 - - + +
111A HIS* 3.2 35.0 - - + +
112A ILE* 3.0 42.2 - - + -
115A GLN* 3.7 24.8 + - + +
108B LEU 3.7 8.1 - - - +
109B HIS* 2.7 19.5 + - + +
111B HIS* 1.3 70.5 - - - +
113B LYS* 1.3 57.8 + - - +
114B GLN 2.9 10.4 + - - -
115B GLN* 4.0 4.2 - - - +
116B GLN* 3.3 21.5 + - - +
75C LEU* 4.2 17.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B HIS 2.9 14.5 + - - +
110B GLU* 3.0 17.0 + - - +
112B ILE* 1.3 73.5 - - + +
114B GLN* 1.3 63.3 + - + +
116B GLN* 4.1 16.6 - - - +
117B GLU* 3.6 30.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B GLU* 3.2 40.6 + - + +
111B HIS* 3.0 9.0 + - - +
112B ILE 2.9 0.4 - - - -
113B LYS* 1.3 88.4 - - + +
115B GLN* 1.3 62.1 + - - +
116B GLN 2.7 6.1 + - - -
117B GLU* 3.8 11.4 - - + +
118B MET* 3.2 21.8 + - - +
71D LEU* 3.9 18.0 - - + +
74D GLU* 5.1 6.1 + - - -
----------------------------------------------------------
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Residues in contact with GLN 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A ILE* 3.6 33.1 + - + +
113A LYS* 5.7 0.2 - - - +
115A GLN* 4.2 12.6 - - - +
116A GLN* 4.5 16.0 + - - +
111B HIS* 2.8 29.3 + - + +
112B ILE* 3.4 6.2 + - - +
114B GLN* 1.3 76.8 - - - +
116B GLN* 1.3 62.0 + - - +
118B MET* 4.2 8.4 - - + +
119B LEU* 3.7 31.4 + - - +
71D LEU* 3.2 27.1 - - + +
75D LEU* 6.2 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A GLN* 4.6 15.5 + - - +
119A LEU* 3.5 28.5 - - + +
112B ILE 3.3 15.7 + - - +
113B LYS* 4.1 18.1 + - - +
114B GLN 2.7 0.6 - - - -
115B GLN 1.3 78.5 - - - +
117B GLU* 1.3 72.6 + - - +
118B MET 3.1 0.5 + - - -
119B LEU* 3.1 4.9 + - - +
120B ALA* 2.5 41.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B LYS* 3.6 25.4 + - - +
114B GLN* 3.5 12.8 + - - +
116B GLN* 1.3 98.0 - - - +
118B MET* 1.3 55.5 + - - +
120B ALA* 3.2 9.4 - - + -
121B MET* 2.6 38.6 + - + +
----------------------------------------------------------
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Residues in contact with MET 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B GLN 3.2 15.2 + - - +
115B GLN* 4.3 7.0 - - + +
116B GLN 3.1 0.8 + - - -
117B GLU* 1.3 73.1 - - - +
119B LEU* 1.3 101.4 + - + +
120B ALA 2.8 3.5 + - - -
121B MET* 3.8 1.2 - - - +
122B LYS* 2.8 35.0 + - + +
64D PRO* 5.1 5.2 - - + +
67D ARG* 4.2 31.0 - - + +
68D GLU* 3.3 50.7 - - + +
71D LEU* 4.1 17.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A GLN 5.4 0.2 - - - +
116A GLN* 4.0 39.0 - - + +
119A LEU* 5.1 15.7 - - + +
120A ALA* 5.2 9.0 - - + +
115B GLN* 3.7 24.3 + - - +
116B GLN* 3.1 7.2 + - - +
118B MET* 1.3 104.6 - - + +
120B ALA* 1.3 64.0 + - - +
122B LYS* 3.6 25.0 - - + +
123B HIS* 3.4 17.2 + - - +
68D GLU* 4.3 4.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A LEU* 5.0 6.5 - - + -
116B GLN* 2.5 33.1 + - + +
117B GLU* 2.9 15.9 - - + +
118B MET 2.8 0.8 - - - -
119B LEU* 1.3 76.1 - - - +
121B MET* 1.3 52.5 + - + +
122B LYS 2.7 14.2 + - - -
124B GLN* 2.8 41.9 + - + +
----------------------------------------------------------
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Residues in contact with MET 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B GLU* 2.6 17.9 + - + +
118B MET* 4.3 1.3 - - - +
120B ALA* 1.3 73.1 - - - +
122B LYS* 1.3 61.0 + - - +
123B HIS 3.4 0.2 - - - -
124B GLN* 3.1 24.7 + - + +
125B GLN* 3.1 51.4 + - + +
129B GLU* 5.0 0.2 - - - +
67D ARG* 6.0 4.5 - - - +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B MET* 2.8 25.4 + - + +
119B LEU* 3.6 25.1 - - + +
120B ALA 2.7 4.6 + - - -
121B MET* 1.3 77.9 - - - +
123B HIS* 1.3 72.8 + - + +
126B GLU* 3.0 30.2 + - - +
129B GLU* 4.5 0.5 - - - +
64D PRO* 4.1 35.1 - - + +
65D ALA* 6.0 0.8 - - - +
68D GLU* 3.7 19.2 + - - +
----------------------------------------------------------
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Residues in contact with HIS 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A HIS* 2.7 75.9 + + + -
124A GLN* 4.0 9.5 - - + -
127A LEU* 3.7 28.1 - - + +
119B LEU 3.4 8.5 + - - +
120B ALA 2.9 4.9 + - - -
122B LYS* 1.3 88.6 + - + +
124B GLN* 1.3 62.1 + - - +
125B GLN 3.1 2.2 - - - -
126B GLU* 3.0 36.6 + - + +
127B LEU 3.8 2.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A HIS* 3.7 16.9 + - + -
120B ALA* 2.8 24.2 + - - +
121B MET* 3.1 42.4 + - - +
123B HIS* 1.3 74.3 - - - +
125B GLN* 1.3 64.6 + - + +
126B GLU 3.7 0.2 + - - -
127B LEU* 3.8 18.2 - - - +
128B LEU* 4.0 5.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B MET* 3.1 49.3 + - + +
123B HIS 3.1 0.2 - - - -
124B GLN* 1.3 81.1 - - + +
126B GLU* 1.3 57.3 + - - +
127B LEU 2.9 10.2 + - - -
128B LEU* 3.2 24.1 + - + +
129B GLU* 3.0 37.3 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il