Contacts of the helix formed by residues 63 - 125 (chain C) in PDB entry 2O94
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 63 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C ALA* 1.3 77.0 - - - +
64C PRO* 1.3 80.5 - - + +
65C ALA 3.5 0.2 - - - -
66C LEU* 2.9 10.7 - - + +
67C ARG* 2.8 51.6 + - - +
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Residues in contact with PRO 64 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A MET* 5.1 3.2 - - - +
122A LYS* 4.1 40.4 - - + +
62C ALA* 5.2 0.2 - - - -
63C GLU* 1.3 99.4 - - + +
65C ALA* 1.3 58.3 + - + +
66C LEU 2.6 6.0 + - - -
67C ARG* 2.5 29.8 + - + +
68C GLU* 2.7 15.8 + - - +
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Residues in contact with ALA 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A LYS* 5.3 4.6 - - - +
62C ALA* 4.7 13.2 - - + -
63C GLU 3.5 0.4 - - - -
64C PRO* 1.3 82.8 - - + +
66C LEU* 1.3 59.8 + - - +
68C GLU* 3.7 20.3 - - - +
69C GLN* 3.6 17.7 + - - +
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Residues in contact with LEU 66 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C ALA* 3.9 27.1 - - + +
63C GLU* 2.9 23.0 + - - +
64C PRO 2.6 0.8 + - - -
65C ALA* 1.3 78.7 - - - +
67C ARG* 1.3 61.7 + - - -
68C GLU 3.0 1.1 - - - -
69C GLN* 3.1 18.7 + - - +
70C GLN* 3.0 18.4 + - - +
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Residues in contact with ARG 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A MET* 4.6 17.7 - - + -
63C GLU* 2.8 42.3 + - - +
64C PRO* 2.5 18.9 + - + +
66C LEU* 1.3 72.7 - - - +
68C GLU* 1.3 59.8 + - - +
70C GLN* 3.0 45.1 + - - +
71C LEU* 3.4 10.8 + - + +
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Residues in contact with GLU 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A MET* 3.2 35.1 - - + +
119A LEU* 4.0 5.5 - - - +
122A LYS* 3.9 17.8 + - - -
64C PRO 2.7 12.7 + - - +
65C ALA* 3.7 17.5 - - - +
67C ARG* 1.3 72.6 - - - +
69C GLN* 1.3 63.9 + - - +
70C GLN 2.9 4.7 + - - -
71C LEU* 3.1 14.3 + - - +
72C GLN* 3.2 38.0 + - + +
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Residues in contact with GLN 69 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C ALA 3.6 10.5 + - - +
66C LEU* 3.1 20.7 + - + +
68C GLU* 1.3 79.7 - - - +
70C GLN* 1.3 65.7 + - - +
72C GLN* 3.7 19.0 - - - +
73C GLN* 2.9 54.1 + - + +
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Residues in contact with GLN 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C LEU 3.0 9.1 + - - +
67C ARG* 3.0 42.6 + - - +
68C GLU 2.9 1.0 - - - -
69C GLN* 1.3 81.7 - - - +
71C LEU* 1.3 53.5 + - + +
73C GLN* 3.0 10.7 + - - +
74C GLU* 2.9 56.4 + - - +
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Residues in contact with LEU 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A HIS* 4.0 13.2 + - + +
114A GLN* 4.4 11.7 - - + +
115A GLN* 3.3 52.5 - - + +
118A MET* 3.9 22.7 - - + -
67C ARG* 4.0 9.4 - - + +
68C GLU 3.1 7.5 + - - +
70C GLN* 1.3 77.2 - - + +
72C GLN* 1.3 57.6 + - + +
73C GLN 2.8 4.7 - - - -
74C GLU* 2.6 49.4 + - + +
75C LEU* 2.8 16.4 + - - +
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Residues in contact with GLN 72 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A HIS* 6.1 0.2 - - - -
68C GLU* 3.2 37.1 + - + +
69C GLN* 3.7 24.0 - - - +
71C LEU* 1.3 80.2 - - + +
73C GLN* 1.3 62.0 + - + +
75C LEU* 4.0 11.8 - - + +
76C LEU* 3.5 24.3 + - - +
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Residues in contact with GLN 73 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69C GLN* 2.9 49.1 + - + +
70C GLN* 3.0 10.9 + - - +
71C LEU 2.7 4.2 + - - -
72C GLN* 1.3 78.4 - - + +
74C GLU* 1.3 67.0 + - - +
76C LEU* 3.6 6.8 + - + +
77C ALA* 3.1 20.4 + - - +
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Residues in contact with GLU 74 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A HIS* 4.8 5.8 - - + -
114A GLN* 5.2 5.9 + - - -
70C GLN* 2.9 43.6 + - - +
71C LEU* 2.6 40.6 + - + +
73C GLN* 1.3 70.8 - - - +
75C LEU* 1.3 53.5 + - - +
77C ALA* 2.8 32.9 + - - +
78C LEU* 3.0 8.1 + - - +
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Residues in contact with LEU 75 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 4.3 6.5 - - + -
111A HIS* 2.9 51.7 + - + +
109B HIS* 3.7 40.8 + - + +
112B ILE* 4.2 17.0 - - + -
71C LEU 2.8 12.8 + - - +
72C GLN* 4.0 10.8 - - + +
74C GLU* 1.3 68.2 - - - +
76C LEU* 1.3 54.9 + - - +
77C ALA 2.6 4.7 + - - -
78C LEU* 2.3 40.7 + - + +
79C LYS* 3.2 4.9 + - - +
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Residues in contact with LEU 76 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B HIS* 5.8 1.3 - - - -
72C GLN 3.5 18.1 + - - +
73C GLN* 3.9 6.7 - - + +
75C LEU* 1.3 78.7 - - - +
77C ALA* 1.3 57.8 + - - +
78C LEU 3.3 0.4 - - - -
79C LYS* 4.3 23.9 - - + +
80C GLN* 3.8 20.6 + - - +
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Residues in contact with ALA 77 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73C GLN 3.1 12.8 + - - +
74C GLU* 2.8 15.7 + - - +
75C LEU 2.6 2.2 + - - -
76C LEU* 1.3 75.1 - - - +
78C LEU* 1.3 63.1 + - - +
80C GLN* 4.1 8.6 + - - +
81C LYS* 3.2 23.0 + - - +
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Residues in contact with LEU 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A GLN* 4.3 28.5 - - + +
108A LEU* 4.0 44.0 - - + +
111A HIS* 4.7 13.2 - - + -
109B HIS* 6.0 0.9 - - + -
74C GLU 3.0 6.6 + - - +
75C LEU* 2.3 34.8 + - + +
77C ALA* 1.3 65.8 - - - +
79C LYS* 1.3 64.2 + - - +
81C LYS* 2.9 17.8 + - + +
82C GLN* 2.8 38.3 + - - +
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Residues in contact with LYS 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102B ARG* 5.5 11.9 - - - +
105B GLU* 3.5 38.3 - - - +
109B HIS* 4.6 18.1 + - + +
75C LEU 3.2 6.3 + - - +
76C LEU* 4.5 21.9 - - + +
78C LEU* 1.3 79.7 - - - +
80C GLN* 1.3 59.5 + - + +
82C GLN* 3.7 5.9 - - - +
83C GLN* 2.8 44.5 + - + +
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Residues in contact with GLN 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76C LEU 3.8 17.2 + - - +
77C ALA* 4.2 6.7 + - - +
78C LEU 3.2 0.6 - - - -
79C LYS* 1.3 81.6 - - + +
81C LYS* 1.3 65.8 + - - +
83C GLN* 3.6 7.2 + - + +
84C ILE* 3.2 29.8 + - + +
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Residues in contact with LYS 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A GLN* 4.3 19.9 - - - +
77C ALA 3.2 14.2 + - - +
78C LEU* 2.9 22.6 + - + +
80C GLN* 1.3 78.0 - - - +
82C GLN* 1.3 54.4 + - + +
84C ILE* 2.7 32.1 + - - +
85C GLN* 3.0 31.5 + - + +
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Residues in contact with GLN 82 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A HIS* 3.1 72.0 + - + +
107A GLN* 3.7 9.8 - - - +
108A LEU* 3.9 19.4 - - - +
105B GLU* 3.8 17.8 + - - +
109B HIS* 6.2 0.4 - - - -
78C LEU* 2.8 34.8 + - + +
79C LYS* 3.7 5.3 - - - +
81C LYS* 1.3 75.0 - - + +
83C GLN* 1.3 64.5 + - - +
85C GLN* 2.9 16.9 + - - +
86C ARG* 2.9 22.4 + - - +
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Residues in contact with GLN 83 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B GLU* 3.7 21.5 - - - +
102B ARG* 2.7 32.7 + - - +
79C LYS* 2.8 34.0 + - + +
80C GLN* 4.1 6.9 - - - +
82C GLN* 1.3 73.7 - - - +
84C ILE* 1.3 65.2 + - + +
86C ARG* 3.9 17.8 - - - +
87C GLN* 3.3 40.3 + - - +
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Residues in contact with ILE 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80C GLN* 3.2 22.4 + - + +
81C LYS* 2.7 14.1 + - - +
83C GLN* 1.3 76.0 - - - +
85C GLN* 1.3 70.0 + - + +
87C GLN* 2.8 29.5 + - + +
88C ILE* 3.0 28.7 + - + +
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Residues in contact with GLN 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A LEU* 4.0 20.9 - - + +
103A GLN* 4.5 7.6 + - - +
104A HIS* 3.2 30.1 + - + +
107A GLN* 4.8 4.5 + - - +
81C LYS* 3.0 34.3 + - + +
82C GLN* 2.9 9.4 + - - +
84C ILE* 1.3 80.8 - - + +
86C ARG* 1.3 55.3 + - - +
88C ILE* 2.7 38.3 + - + +
89C LEU* 2.8 11.8 + - - +
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Residues in contact with ARG 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A LEU* 4.0 11.2 - - + +
104A HIS* 3.4 29.3 + - + +
97B PHE* 3.6 27.0 - - + -
98B GLU* 3.2 25.0 + - - +
101B SER* 3.0 42.2 + - - +
102B ARG* 5.7 0.4 - - - +
105B GLU* 3.5 26.1 + - - +
82C GLN* 2.9 20.4 + - - +
83C GLN* 3.9 25.2 - - - +
85C GLN* 1.3 71.9 - - - +
87C GLN* 1.3 57.7 + - - +
89C LEU* 3.2 5.6 + - - +
90C ILE* 3.0 31.5 + - - +
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Residues in contact with GLN 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B GLN* 4.9 11.2 + - - +
98B GLU* 4.4 11.4 - - - +
83C GLN* 3.3 36.9 + - - +
84C ILE* 2.8 23.9 + - + +
86C ARG* 1.3 75.6 - - - +
88C ILE* 1.3 60.2 + - + +
90C ILE* 3.9 6.1 - - - +
91C ALA* 3.0 29.3 + - - +
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Residues in contact with ILE 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84C ILE* 3.0 29.5 + - + +
85C GLN* 2.7 24.5 + - + +
87C GLN* 1.3 70.7 - - + +
89C LEU* 1.3 55.0 + - - +
91C ALA* 3.8 4.3 - - + +
92C GLU* 2.8 43.7 + - + +
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Residues in contact with LEU 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A PHE* 4.1 20.2 - - + -
96A GLN* 3.9 34.1 - - + +
97A PHE* 3.9 28.9 - - + -
100A LEU* 4.2 16.4 - - + -
97B PHE* 4.4 11.0 - - + -
85C GLN 2.8 10.5 + - - +
86C ARG* 3.3 11.7 - - - +
88C ILE* 1.3 78.5 - - - +
90C ILE* 1.3 56.2 + - - +
92C GLU* 3.2 25.2 - - - +
93C PHE* 3.0 25.5 + - - +
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Residues in contact with ILE 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93A PHE* 4.0 13.9 - - + -
90B ILE* 5.5 7.0 - - + -
93B PHE* 3.4 39.3 - - + -
94B GLN* 3.9 32.1 - - + +
97B PHE* 3.5 30.1 - - + -
86C ARG 3.0 10.8 + - - +
87C GLN* 3.9 6.1 - - - +
89C LEU* 1.3 74.0 - - + +
91C ALA* 1.3 57.4 + - - +
93C PHE* 3.1 8.2 + - + +
94C GLN* 2.7 36.5 + - + +
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Residues in contact with ALA 91 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C GLN 3.0 18.9 + - - +
88C ILE* 3.8 5.4 - - - +
90C ILE* 1.3 77.2 - - - +
92C GLU* 1.3 63.3 + - - +
94C GLN* 3.2 10.2 - - - +
95C ARG* 3.0 23.6 + - - +
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Residues in contact with GLU 92 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A GLN* 2.6 36.9 + - - +
88C ILE* 2.8 20.0 + - + +
89C LEU* 3.2 24.8 - - - +
91C ALA* 1.3 79.3 - - - +
93C PHE* 1.3 63.1 + - - +
95C ARG* 3.1 9.9 + - - +
96C GLN* 3.1 36.7 + - - +
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Residues in contact with PHE 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A LEU* 4.0 34.5 - - + -
90A ILE* 4.1 9.0 - - + -
92A GLU* 6.0 0.7 - - - -
93A PHE* 3.2 58.1 - + + -
90B ILE* 3.4 31.4 - - + -
93B PHE* 5.8 2.2 - + - -
89C LEU 3.0 8.0 + - - +
90C ILE* 3.1 11.9 + - + +
92C GLU* 1.3 72.6 + - - +
94C GLN* 1.3 72.1 + - - +
95C ARG 3.1 0.3 + - - -
96C GLN* 3.1 9.3 + - + +
97C PHE* 2.9 35.2 + + + +
93D PHE* 3.6 29.4 - + - -
97D PHE* 5.5 0.4 - + - -
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Residues in contact with GLN 94 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B GLN* 4.9 12.7 - - - +
90B ILE* 3.9 34.3 - - + +
90C ILE* 2.7 18.5 + - + +
91C ALA* 3.2 15.5 - - - +
93C PHE* 1.3 78.9 - - - +
95C ARG* 1.3 68.2 + - - +
97C PHE* 2.9 22.3 + - - +
98C GLU* 3.1 26.4 + - - +
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Residues in contact with ARG 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C ALA 3.0 12.1 + - - +
92C GLU* 3.1 12.7 + - - +
94C GLN* 1.3 76.6 + - - +
96C GLN* 1.3 82.7 + - - +
97C PHE 2.7 11.0 + - - -
98C GLU* 3.1 4.3 + - - +
99C GLN* 3.0 48.8 + - + +
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Residues in contact with GLN 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A LEU* 3.8 21.4 - - + +
92A GLU* 2.7 37.8 + - - +
96A GLN* 4.7 4.6 + - - +
92C GLU* 3.1 36.6 + - - +
93C PHE* 3.6 9.4 + - - +
95C ARG* 1.3 98.1 - - - +
97C PHE* 1.3 58.8 + - - +
99C GLN* 4.0 14.8 + - - +
100C LEU* 3.5 20.4 + - - +
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Residues in contact with PHE 97 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A LEU* 3.9 17.3 - - + -
86B ARG* 3.5 45.3 - - + -
89B LEU* 4.4 9.0 - - + -
90B ILE* 3.6 28.5 - - + -
93C PHE* 2.9 26.2 + + + +
94C GLN* 3.0 17.9 - - - +
95C ARG 2.7 2.6 + - - -
96C GLN* 1.3 77.9 - - - +
98C GLU* 1.3 65.0 + - - -
99C GLN 3.1 1.3 - - - -
100C LEU* 3.6 1.7 + - + +
101C SER* 3.0 35.5 + - - -
93D PHE* 5.4 0.4 - + - -
97D PHE* 2.9 40.6 - + - -
100D LEU* 5.9 0.2 - - + -
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Residues in contact with GLU 98 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B GLN* 2.7 36.8 + - - +
86B ARG* 3.2 36.0 + - - +
87B GLN* 4.5 7.6 - - - +
94C GLN* 3.1 24.4 + - - +
95C ARG* 3.1 3.1 + - - +
97C PHE* 1.3 79.1 - - - +
99C GLN* 1.3 55.8 + - - +
101C SER* 3.3 3.1 + - - -
102C ARG* 2.7 66.9 + - + +
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Residues in contact with GLN 99 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95C ARG* 3.0 49.2 + - + +
96C GLN* 4.0 13.2 + - - +
98C GLU* 1.3 74.9 - - - +
100C LEU* 1.3 67.2 + - - +
102C ARG* 3.1 7.5 + - - +
103C GLN* 3.0 43.6 + - + +
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Residues in contact with LEU 100 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A GLN* 3.5 19.3 - - + +
86A ARG* 4.1 24.9 - - + +
89A LEU* 4.3 19.5 - - + -
96C GLN 3.5 15.8 + - - +
97C PHE* 4.0 3.8 - - + +
99C GLN* 1.3 77.3 - - - +
101C SER* 1.3 55.5 + - - +
103C GLN* 2.7 33.4 + - - +
104C HIS* 2.7 70.7 + - + +
97D PHE* 5.8 0.2 - - + -
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Residues in contact with SER 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B ARG* 3.0 47.6 + - - -
97C PHE* 3.0 25.0 + - - -
98C GLU* 3.4 8.3 - - - -
100C LEU* 1.3 79.8 - - - +
102C ARG* 1.3 56.8 + - - +
104C HIS* 4.2 5.9 - - - +
105C GLU* 3.0 30.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 102 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B LYS* 5.4 14.6 - - - +
83B GLN* 3.8 32.5 + - - +
86B ARG* 5.9 0.2 - - - +
98C GLU* 2.7 54.4 + - + +
99C GLN* 3.1 5.6 + - - +
101C SER* 1.3 70.9 - - - +
103C GLN* 1.3 69.2 + - + +
105C GLU* 3.6 10.7 - - - +
106C ALA* 3.0 22.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 103 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A GLN* 4.6 6.5 + - - +
99C GLN* 3.0 36.1 + - + +
100C LEU* 2.7 30.1 + - - +
102C ARG* 1.3 72.5 - - + +
104C HIS* 1.3 72.8 + - + +
105C GLU 2.8 1.9 + - - -
106C ALA* 2.8 17.9 + - - +
107C GLN* 3.1 20.1 + - + +
----------------------------------------------------------
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Residues in contact with HIS 104 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A GLN* 2.9 62.4 - - + +
85A GLN* 3.5 21.1 - - + +
86A ARG* 3.6 21.3 + - + +
100C LEU* 2.7 60.8 + - + +
101C SER* 4.2 5.7 + - - +
103C GLN* 1.3 75.5 - - + +
105C GLU* 1.3 61.9 - - - +
107C GLN* 3.3 12.3 + - - +
108C LEU* 2.9 22.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 105 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B LYS* 3.6 47.0 - - - +
82B GLN* 4.1 10.3 + - - +
83B GLN* 5.3 0.6 - - - +
86B ARG* 3.4 23.6 + - - +
101C SER 3.0 17.6 + - - +
102C ARG* 3.6 10.7 - - - +
103C GLN 2.8 3.6 + - - -
104C HIS* 1.3 72.5 - - - +
106C ALA* 1.3 68.1 + - - +
108C LEU* 2.8 11.1 + - - +
109C HIS* 2.7 39.7 + - + +
108D LEU* 4.6 12.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 106 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102C ARG 3.0 14.1 + - - +
103C GLN* 2.8 9.9 + - - +
105C GLU* 1.3 75.1 + - - +
107C GLN* 1.3 53.5 + - + +
109C HIS* 3.1 8.2 + - - +
110C GLU* 2.6 37.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 107 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A LEU* 4.2 21.8 - - + +
81A LYS* 4.0 22.8 + - - +
82A GLN* 3.6 18.7 - - - +
85A GLN* 5.0 2.4 + - - +
103C GLN* 3.4 17.2 - - + +
104C HIS* 3.3 17.9 - - - +
105C GLU 3.0 0.2 - - - -
106C ALA* 1.3 76.5 - - + +
108C LEU* 1.3 65.0 + - - +
109C HIS 2.8 0.7 + - - -
110C GLU* 2.9 16.8 + - - +
111C HIS* 2.8 24.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 108 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A LEU* 4.4 9.6 - - + -
78A LEU* 3.6 20.8 - - + +
82A GLN* 3.9 21.3 - - - +
104C HIS* 2.9 11.0 + - + +
105C GLU* 2.8 12.7 + - - +
107C GLN* 1.3 73.4 - - - +
109C HIS* 1.3 62.0 + - - +
111C HIS* 3.5 13.2 - - + +
112C ILE* 3.5 13.5 + - - +
105D GLU* 4.6 16.8 - - + -
108D LEU* 4.0 36.7 - - + +
109D HIS* 3.7 26.5 - - + +
112D ILE* 4.7 5.6 - - + -
----------------------------------------------------------
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Residues in contact with HIS 109 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B LEU* 3.7 44.8 + - + +
76B LEU* 5.5 1.4 + - - -
78B LEU* 6.2 0.7 - - + -
79B LYS* 4.9 17.5 - - + +
82B GLN* 6.1 0.4 - - - -
105C GLU* 2.7 37.3 + - + +
106C ALA* 3.4 10.8 - - - +
108C LEU* 1.3 70.3 - - - +
110C GLU* 1.3 68.8 + - - +
111C HIS 3.0 1.3 - - - -
112C ILE* 2.6 22.2 + - + +
113C LYS* 2.9 11.0 + - - +
108D LEU* 3.8 21.4 - - + +
----------------------------------------------------------
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Residues in contact with GLU 110 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A LEU* 5.8 2.6 - - - +
106C ALA 2.6 21.8 + - - +
107C GLN* 3.3 17.5 - - - +
109C HIS* 1.3 70.0 - - - +
111C HIS* 1.3 65.9 + - - +
113C LYS* 2.8 30.2 + - + +
114C GLN* 3.0 37.5 + - + +
----------------------------------------------------------
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Residues in contact with HIS 111 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A LEU* 4.1 21.8 + - + +
74A GLU* 5.0 3.1 - - + -
75A LEU* 2.8 63.7 + - + +
78A LEU* 5.2 11.7 - - + -
107C GLN 2.8 11.2 + - - +
108C LEU* 3.5 15.3 - - + +
110C GLU* 1.3 80.1 + - - +
112C ILE* 1.3 57.6 + - - +
114C GLN* 2.7 30.8 + - - +
115C GLN* 2.9 32.4 + - + +
112D ILE* 3.6 14.8 - - + +
----------------------------------------------------------
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Residues in contact with ILE 112 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B LEU* 4.4 17.5 - - + -
108C LEU 3.5 8.0 + - - +
109C HIS* 2.6 18.5 + - + +
111C HIS* 1.3 78.8 + - - +
113C LYS* 1.3 62.2 + - - +
114C GLN 3.2 1.0 + - - -
115C GLN* 3.5 5.9 + - - +
116C GLN* 3.5 19.1 + - - +
108D LEU* 4.2 9.6 - - + +
111D HIS* 3.4 32.3 - - + +
112D ILE* 3.1 41.5 - - + -
115D GLN* 3.9 25.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 113 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C HIS 2.9 8.5 + - - +
110C GLU* 2.8 21.8 + - + +
112C ILE* 1.3 78.4 - - - +
114C GLN* 1.3 61.3 + - + +
116C GLN* 3.6 24.5 - - - +
117C GLU* 3.1 29.5 + - - +
115D GLN* 5.8 0.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 114 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A LEU* 3.7 18.6 - - + +
74A GLU* 5.3 3.6 + - - -
110C GLU* 3.0 41.8 + - + +
111C HIS* 2.7 9.9 + - - +
113C LYS* 1.3 86.5 - - + +
115C GLN* 1.3 58.2 + - - +
116C GLN 2.7 9.1 + - - -
117C GLU* 3.5 16.0 + - - +
118C MET* 3.3 21.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 115 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A LEU* 3.3 28.0 - - + +
75A LEU* 6.2 0.4 - - - +
111C HIS* 2.9 29.0 + - + +
112C ILE* 3.5 7.6 + - - +
114C GLN* 1.3 75.4 - - - +
116C GLN* 1.3 59.6 + - - +
118C MET* 4.2 9.4 - - + -
119C LEU* 3.8 31.2 + - - +
112D ILE* 3.6 31.2 + - + +
115D GLN* 4.3 11.0 - - - +
116D GLN* 4.4 17.5 + - - +
119D LEU* 4.9 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C ILE 3.5 14.9 + - - +
113C LYS* 3.6 18.4 + - - +
114C GLN 2.7 1.6 - - - -
115C GLN 1.3 78.1 - - - +
117C GLU* 1.3 75.1 + - - +
118C MET 3.1 1.4 + - - -
119C LEU* 3.1 5.5 + - - +
120C ALA* 2.6 38.8 + - + +
115D GLN* 4.4 12.3 + - - +
119D LEU* 3.7 27.9 - - + +
----------------------------------------------------------
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Residues in contact with GLU 117 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113C LYS* 3.1 31.7 + - - +
114C GLN* 3.5 18.7 + - - +
116C GLN* 1.3 98.0 - - - +
118C MET* 1.3 52.7 + - - +
120C ALA* 2.9 10.6 - - + +
121C MET* 2.7 42.2 + - + +
124C GLN* 5.0 1.1 - - - +
----------------------------------------------------------
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Residues in contact with MET 118 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A PRO* 5.1 2.9 - - + +
67A ARG* 4.4 27.4 - - + +
68A GLU* 3.3 47.1 - - + +
71A LEU* 4.0 21.8 - - + -
114C GLN 3.3 14.8 + - - +
115C GLN* 4.5 7.6 - - + -
116C GLN 3.1 0.4 - - - -
117C GLU* 1.3 74.8 - - - +
119C LEU* 1.3 98.5 + - + +
120C ALA 2.7 12.8 + - - -
121C MET* 3.1 5.1 + - - +
122C LYS* 2.9 31.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 119 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A GLU* 5.0 2.5 - - - +
115C GLN* 3.8 23.6 + - - +
116C GLN 3.1 7.4 + - - +
118C MET* 1.3 107.0 - - + +
120C ALA* 1.3 64.4 + - - +
122C LYS* 4.0 20.7 - - + +
123C HIS* 3.5 16.5 + - - +
116D GLN* 3.8 41.3 - - + +
119D LEU* 4.7 19.7 - - + +
120D ALA* 5.1 6.3 - - + +
----------------------------------------------------------
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Residues in contact with ALA 120 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C GLN* 2.6 24.1 + - + +
117C GLU* 2.9 18.8 - - + +
118C MET 2.7 0.6 + - - -
119C LEU* 1.3 71.0 - - - +
121C MET* 1.3 53.7 + - - +
123C HIS 2.8 9.5 + - - -
124C GLN* 2.5 54.2 + - + +
119D LEU* 5.5 3.8 - - + -
----------------------------------------------------------
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Residues in contact with MET 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C GLU* 2.7 22.6 + - + +
118C MET* 3.8 3.8 - - - +
120C ALA* 1.3 69.9 - - - +
122C LYS* 1.3 62.3 + - - +
123C HIS 3.1 1.0 + - - -
124C GLN* 2.6 31.1 - - - +
125C GLN* 3.4 47.8 + - - +
126C GLU 4.2 0.5 + - - -
129C GLU* 4.7 1.7 - - - +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A PRO* 4.1 35.2 - - + -
65A ALA* 5.2 8.2 - - - +
68A GLU* 3.2 24.7 + - - +
118C MET* 2.9 21.1 + - - +
119C LEU* 4.0 25.4 - - + +
120C ALA 3.0 0.2 + - - -
121C MET* 1.3 76.7 - - - +
123C HIS* 1.3 73.7 + - + +
126C GLU* 3.3 21.8 - - - +
129C GLU* 4.7 1.0 - - - +
----------------------------------------------------------
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Residues in contact with HIS 123 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C LEU 3.5 9.8 + - - +
120C ALA 2.8 6.5 + - - -
122C LYS* 1.3 93.7 + - + +
124C GLN* 1.3 64.9 + - - +
125C GLN 3.3 1.1 - - - -
126C GLU* 3.2 31.7 + - + +
127C LEU* 4.0 1.9 - - - +
119D LEU 6.0 0.2 - - - +
123D HIS* 2.7 72.4 + + + -
124D GLN* 4.0 13.6 + - + -
127D LEU* 3.9 24.4 - - + +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C GLU* 3.8 1.2 + - - +
120C ALA* 2.5 38.8 + - + +
121C MET* 2.6 48.8 - - - +
123C HIS* 1.3 73.2 - - - +
125C GLN* 1.3 63.7 + - + +
126C GLU 3.3 0.7 - - - -
127C LEU* 4.4 16.9 + - - +
128C LEU* 4.6 3.6 - - - +
123D HIS* 3.8 15.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 125 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121C MET* 3.4 35.9 + - - +
124C GLN* 1.3 82.5 - - + +
126C GLU* 1.3 55.0 + - - +
127C LEU 2.9 11.4 + - - -
128C LEU* 3.4 22.6 + - + +
129C GLU* 3.0 37.6 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il