Contacts of the helix formed by residues 63 - 125 (chain D) in PDB entry 2O94
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 63 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D ALA* 1.3 82.0 - - - +
64D PRO* 1.3 84.3 - - + +
65D ALA 3.3 0.2 - - - -
66D LEU* 3.1 20.6 + - - +
67D ARG* 3.2 39.2 + - - +
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Residues in contact with PRO 64 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B MET* 5.1 4.1 - - + +
122B LYS* 4.1 42.8 - - + +
126B GLU* 6.1 0.7 - - - +
63D GLU* 1.3 94.9 - - + +
65D ALA* 1.3 59.0 + - + +
66D LEU 2.6 16.5 + - - -
67D ARG* 2.7 12.6 + - + +
68D GLU* 2.6 29.4 + - - +
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Residues in contact with ALA 65 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B LYS* 6.0 1.3 - - - +
62D ALA* 4.3 17.3 - - + -
63D GLU 3.3 0.4 - - - -
64D PRO* 1.3 82.5 - - + +
66D LEU* 1.3 59.8 + - + +
68D GLU* 3.9 15.3 - - - +
69D GLN* 3.4 21.7 + - - +
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Residues in contact with LEU 66 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D ALA* 3.3 44.2 - - + +
63D GLU* 3.1 11.8 + - - +
64D PRO 2.6 1.0 + - - -
65D ALA* 1.3 82.4 - - + +
67D ARG* 1.3 52.8 + - + +
68D GLU 2.9 3.8 - - - -
69D GLN* 2.8 14.7 + - - +
70D GLN* 2.7 34.9 + - - +
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Residues in contact with ARG 67 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B MET* 4.2 20.7 - - + +
121B MET* 6.0 4.3 - - - +
63D GLU* 3.2 29.7 + - - +
64D PRO* 2.7 13.4 + - + +
66D LEU* 1.3 75.4 - - + +
68D GLU* 1.3 60.2 + - - +
70D GLN* 3.5 26.1 + - - +
71D LEU* 3.3 27.2 + - - +
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Residues in contact with GLU 68 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B MET* 3.3 32.6 - - + +
119B LEU* 4.3 5.5 - - - +
122B LYS* 3.7 20.6 + - - +
64D PRO 2.6 15.1 + - - +
65D ALA* 3.9 13.6 - - - +
67D ARG* 1.3 75.5 - - - +
69D GLN* 1.3 66.0 + - - +
70D GLN 3.2 0.5 + - - -
71D LEU* 3.2 4.9 + - - +
72D GLN* 2.9 52.4 + - - +
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Residues in contact with GLN 69 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65D ALA 3.4 13.6 + - - +
66D LEU* 2.8 16.8 + - - +
68D GLU* 1.3 79.0 - - - +
70D GLN* 1.3 62.7 + - - +
72D GLN* 3.5 14.7 + - + +
73D GLN* 2.9 49.1 + - - +
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Residues in contact with GLN 70 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66D LEU 2.7 16.3 + - - +
67D ARG* 3.5 34.0 + - - +
69D GLN* 1.3 73.1 - - - +
71D LEU* 1.3 55.7 + - + +
73D GLN* 2.8 11.2 - - + +
74D GLU* 2.7 62.2 + - + +
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Residues in contact with LEU 71 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B HIS* 3.6 19.9 + - + +
114B GLN* 3.9 20.9 - - + +
115B GLN* 3.2 47.8 - - + +
118B MET* 4.1 16.8 - - + -
67D ARG 3.3 11.4 + - - +
68D GLU 3.2 7.8 + - - +
70D GLN* 1.3 77.0 - - + +
72D GLN* 1.3 68.7 + - + +
73D GLN 2.9 1.3 + - - -
74D GLU* 3.0 23.9 + - - +
75D LEU* 2.7 27.2 + - - +
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Residues in contact with GLN 72 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68D GLU* 2.9 50.9 + - - +
69D GLN* 3.8 13.7 - - + +
71D LEU* 1.3 76.6 - - + +
73D GLN* 1.3 64.5 + - - +
75D LEU* 3.8 11.3 - - + +
76D LEU* 3.2 30.5 + - + +
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Residues in contact with GLN 73 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69D GLN* 2.9 41.3 + - - +
70D GLN* 2.8 18.1 - - + +
72D GLN* 1.3 81.2 - - - +
74D GLU* 1.3 61.7 + - + +
76D LEU* 3.2 12.2 + - - +
77D ALA* 3.2 18.6 + - - +
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Residues in contact with GLU 74 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B HIS* 4.9 9.2 - - + -
114B GLN* 5.1 6.2 + - - -
70D GLN* 2.7 49.1 + - + +
71D LEU* 3.5 22.9 - - - +
73D GLN* 1.3 73.3 - - + +
75D LEU* 1.3 50.2 + - - +
77D ALA* 2.8 12.7 + - - +
78D LEU* 2.7 35.2 + - - +
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Residues in contact with LEU 75 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A HIS* 3.3 46.2 + - + +
112A ILE* 4.2 17.7 - - + -
108B LEU* 4.3 7.4 - - + -
111B HIS* 3.0 48.4 + - + +
115B GLN* 6.2 0.2 - - - +
71D LEU 2.7 15.0 + - - +
72D GLN* 3.8 11.4 - - + +
74D GLU* 1.3 66.9 - - - +
76D LEU* 1.3 57.4 + - + +
77D ALA 2.7 5.6 + - - -
78D LEU* 2.7 30.5 + - + +
79D LYS* 3.0 13.2 + - - +
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Residues in contact with LEU 76 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A HIS* 5.7 6.1 - - + +
72D GLN* 3.2 19.7 + - + +
73D GLN* 3.2 13.7 + - - +
75D LEU* 1.3 80.0 - - + +
77D ALA* 1.3 58.9 + - - +
79D LYS* 4.2 17.1 - - + +
80D GLN* 3.5 20.3 + - - +
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Residues in contact with ALA 77 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73D GLN 3.2 10.5 + - - +
74D GLU* 2.8 17.7 + - - +
75D LEU 2.8 0.2 - - - -
76D LEU* 1.3 79.2 - - - +
78D LEU* 1.3 64.1 + - - +
79D LYS 3.3 0.2 - - - -
80D GLN* 3.3 7.0 + - - +
81D LYS* 3.0 25.0 + - - +
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Residues in contact with LEU 78 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A HIS* 6.2 0.7 - - + -
107B GLN* 4.3 22.7 - - + +
108B LEU* 3.7 49.1 - - + +
110B GLU* 5.8 2.5 - - - +
111B HIS* 5.3 8.5 - - + -
74D GLU 2.7 11.2 + - - +
75D LEU* 2.7 21.3 + - + +
77D ALA* 1.3 71.7 - - - +
79D LYS* 1.3 61.9 + - - +
81D LYS* 3.5 10.8 - - + +
82D GLN* 3.1 44.1 + - + +
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Residues in contact with LYS 79 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ARG* 5.4 15.5 - - - +
105A GLU* 3.4 39.6 - - - +
109A HIS* 5.1 13.2 - - + +
75D LEU 3.0 11.3 + - - +
76D LEU* 4.3 15.6 - - + +
78D LEU* 1.3 75.4 - - - +
80D GLN* 1.3 69.0 + - - +
82D GLN* 3.9 4.6 - - - +
83D GLN* 2.8 39.2 + - + +
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Residues in contact with GLN 80 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76D LEU 3.5 15.1 + - - +
77D ALA* 3.3 12.5 + - - +
79D LYS* 1.3 83.2 - - - +
81D LYS* 1.3 66.0 + - - +
83D GLN* 3.4 7.9 + - - +
84D ILE* 3.3 27.3 + - + +
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Residues in contact with LYS 81 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B GLN* 4.3 22.6 - - - +
77D ALA 3.0 10.1 + - - +
78D LEU* 3.5 16.8 - - + +
80D GLN* 1.3 79.2 - - - +
82D GLN* 1.3 57.7 + - + +
84D ILE* 2.7 31.9 + - - +
85D GLN* 2.9 37.0 + - + +
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Residues in contact with GLN 82 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A GLU* 4.0 15.6 + - - +
104B HIS* 2.9 76.8 + - + +
107B GLN* 3.7 9.6 - - - +
108B LEU* 3.9 19.7 - - - +
78D LEU* 3.1 30.3 + - + +
79D LYS* 3.9 3.4 - - - +
81D LYS* 1.3 81.8 - - + +
83D GLN* 1.3 64.2 + - - +
85D GLN* 4.0 2.7 - - - +
86D ARG* 2.9 33.9 + - - +
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Residues in contact with GLN 83 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98A GLU* 3.8 22.6 - - - +
102A ARG* 3.2 28.0 + - - +
79D LYS* 2.8 33.7 + - + +
80D GLN* 3.5 8.8 + - - +
82D GLN* 1.3 72.6 - - - +
84D ILE* 1.3 72.6 + - - +
86D ARG* 3.6 19.1 - - - +
87D GLN* 3.5 35.8 + - - +
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Residues in contact with ILE 84 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80D GLN* 3.3 21.1 + - + +
81D LYS* 2.7 17.7 + - - +
83D GLN* 1.3 80.5 - - - +
85D GLN* 1.3 59.6 + - + +
86D ARG 3.1 1.1 - - - -
87D GLN* 2.5 40.4 + - + +
88D ILE* 3.0 27.0 + - + -
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Residues in contact with GLN 85 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B LEU* 3.6 27.4 - - + +
103B GLN* 4.7 5.5 + - - +
104B HIS* 3.6 24.5 + - + +
107B GLN* 5.2 2.6 + - - +
81D LYS* 2.9 48.2 + - + +
82D GLN* 3.7 3.0 - - - +
84D ILE* 1.3 76.6 - - + +
86D ARG* 1.3 55.3 + - - +
88D ILE* 2.6 38.3 + - + +
89D LEU* 2.8 12.0 + - - +
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Residues in contact with ARG 86 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A GLN* 6.2 0.2 - - - -
97A PHE* 3.5 28.4 - - + -
98A GLU* 3.2 23.7 + - - +
101A SER* 2.9 43.8 + - - +
102A ARG* 5.7 0.8 - - - +
105A GLU* 3.5 24.9 + - - +
100B LEU* 4.1 9.8 - - + +
104B HIS* 3.5 29.0 + - + +
82D GLN* 2.9 23.8 + - - +
83D GLN* 3.6 22.3 - - - +
84D ILE 3.0 0.2 + - - -
85D GLN* 1.3 76.4 - - - +
87D GLN* 1.3 56.4 + - - +
89D LEU* 3.3 4.6 + - - +
90D ILE* 3.0 32.1 + - - +
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Residues in contact with GLN 87 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A GLN* 4.9 11.8 + - - +
98A GLU* 4.5 9.4 - - - +
83D GLN* 3.5 36.3 + - - +
84D ILE* 2.5 25.4 + - + +
86D ARG* 1.3 71.0 - - - +
88D ILE* 1.3 58.4 + - + +
90D ILE* 3.5 6.3 + - - +
91D ALA* 3.0 29.3 + - - +
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Residues in contact with ILE 88 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84D ILE* 3.0 26.4 + - + +
85D GLN* 2.6 22.9 + - + +
87D GLN* 1.3 71.3 - - + +
89D LEU* 1.3 61.0 + - - +
91D ALA* 3.3 5.1 + - + +
92D GLU* 2.8 36.2 + - + +
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Residues in contact with LEU 89 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A PHE* 4.3 11.7 - - + -
93B PHE* 4.0 20.6 - - + -
96B GLN* 3.8 33.9 - - + +
97B PHE* 3.9 28.9 - - + -
100B LEU* 4.3 16.8 - - + -
85D GLN 2.8 10.1 + - - +
86D ARG* 3.4 11.4 - - - +
88D ILE* 1.3 78.4 - - - +
90D ILE* 1.3 56.4 + - + +
92D GLU* 3.2 23.5 - - - +
93D PHE* 3.0 25.1 + - - +
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Residues in contact with ILE 90 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ILE* 5.5 8.0 - - + +
93A PHE* 3.4 39.9 - - + -
94A GLN* 3.9 31.6 - - + +
97A PHE* 3.6 23.1 - - + -
93B PHE* 4.1 13.9 - - + -
86D ARG 3.0 19.1 + - - +
87D GLN* 3.8 6.5 - - - +
89D LEU* 1.3 74.1 - - + +
91D ALA* 1.3 56.0 + - - +
93D PHE* 3.1 8.5 + - + +
94D GLN* 2.7 36.2 + - + +
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Residues in contact with ALA 91 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87D GLN 3.0 18.9 + - - +
88D ILE* 3.7 6.3 - - - +
90D ILE* 1.3 77.1 - - - +
92D GLU* 1.3 64.0 + - - +
94D GLN* 3.1 10.2 - - - +
95D ARG* 2.9 23.4 + - - +
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Residues in contact with GLU 92 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B PHE* 6.0 0.5 - - - -
96B GLN* 2.7 35.5 + - - +
88D ILE* 2.8 24.1 + - + +
89D LEU* 3.2 21.4 - - - +
91D ALA* 1.3 78.9 - - - +
93D PHE* 1.3 63.4 + - - +
95D ARG* 3.2 10.3 + - - +
96D GLN* 3.1 38.5 + - + +
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Residues in contact with PHE 93 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ILE* 3.3 33.9 - - + -
93A PHE* 5.9 2.7 - + - -
89B LEU* 4.0 35.7 - - + -
90B ILE* 4.0 9.6 - - + -
92B GLU* 6.1 0.2 - - - -
93B PHE* 3.2 58.3 - + + -
93C PHE* 3.6 29.6 - + - -
97C PHE* 5.4 0.4 - + - -
89D LEU 3.0 7.5 + - - +
90D ILE* 3.5 12.3 - - + +
92D GLU* 1.3 72.1 + - - +
94D GLN* 1.3 69.4 + - - +
95D ARG 3.1 0.3 + - - -
96D GLN* 3.1 8.8 + - + +
97D PHE* 2.8 35.4 + + + +
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Residues in contact with GLN 94 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A ARG 6.3 0.2 - - - -
87A GLN* 4.9 13.1 + - - +
90A ILE* 3.9 33.2 - - + +
90D ILE* 2.7 18.8 + - + +
91D ALA* 3.1 15.7 - - - +
93D PHE* 1.3 76.0 - - - +
95D ARG* 1.3 63.0 + - - +
97D PHE* 2.9 30.6 + - - +
98D GLU* 3.0 25.6 + - - +
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Residues in contact with ARG 95 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91D ALA 2.9 12.2 + - - +
92D GLU* 3.6 12.1 + - - +
94D GLN* 1.3 77.8 + - - +
96D GLN* 1.3 79.1 + - - +
97D PHE 2.7 14.8 + - - -
98D GLU* 3.1 4.4 + - - +
99D GLN* 3.0 49.4 + - + +
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Residues in contact with GLN 96 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B LEU* 3.8 21.9 - - + +
92B GLU* 2.6 39.4 + - - +
96B GLN* 4.7 4.1 + - - +
92D GLU* 3.1 36.1 + - - +
93D PHE* 3.6 9.8 + - + +
95D ARG* 1.3 97.6 - - - +
97D PHE* 1.3 58.9 + - - +
99D GLN* 4.0 14.6 + - - +
100D LEU* 3.4 21.3 + - - +
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Residues in contact with PHE 97 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A ARG* 3.6 45.3 - - + -
89A LEU* 4.3 10.1 - - + -
90A ILE* 3.5 28.9 - - + -
89B LEU* 4.0 15.3 - - + -
97C PHE* 2.9 42.4 - + - -
100C LEU* 5.8 0.4 - - + -
93D PHE* 2.8 24.0 + + + +
94D GLN* 2.9 19.7 - - - +
95D ARG 2.7 2.8 + - - -
96D GLN* 1.3 78.6 - - - +
98D GLU* 1.3 64.8 + - - -
99D GLN 3.1 1.1 - - - -
100D LEU* 3.7 1.7 + - + +
101D SER* 3.0 34.3 + - - -
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Residues in contact with GLU 98 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A GLN* 3.6 33.8 - - - +
86A ARG* 3.1 41.2 + - - +
87A GLN* 4.5 7.6 - - - +
94D GLN* 3.0 27.3 + - - +
95D ARG* 3.1 3.3 + - - +
97D PHE* 1.3 77.5 - - - +
99D GLN* 1.3 55.3 + - - +
101D SER* 3.2 2.4 + - - -
102D ARG* 2.7 65.8 + - + +
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Residues in contact with GLN 99 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95D ARG* 3.0 50.3 + - + +
96D GLN* 4.0 12.3 + - - +
98D GLU* 1.3 74.2 - - - +
100D LEU* 1.3 69.4 + - - +
102D ARG* 3.1 8.0 + - - +
103D GLN* 3.0 43.9 + - + +
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Residues in contact with LEU 100 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B GLN* 3.6 17.3 - - + +
86B ARG* 4.1 27.4 - - + +
89B LEU* 4.3 18.4 - - + -
97C PHE* 5.9 0.4 - - + -
96D GLN 3.4 16.6 + - - +
97D PHE* 4.1 3.4 - - + +
98D GLU 3.4 0.2 - - - -
99D GLN* 1.3 78.4 - - - +
101D SER* 1.3 57.2 + - - +
103D GLN* 2.9 27.3 + - - +
104D HIS* 2.7 73.2 + - + +
----------------------------------------------------------
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Residues in contact with SER 101 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A ARG* 2.9 50.4 + - - -
97D PHE* 3.0 24.1 + - - -
98D GLU* 3.4 8.1 - - - -
99D GLN 3.1 0.2 - - - -
100D LEU* 1.3 80.9 - - - +
102D ARG* 1.3 57.1 + - - +
104D HIS* 4.2 5.5 - - - +
105D GLU* 3.0 28.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 102 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LYS* 5.8 10.6 - - - +
83A GLN* 3.2 32.0 + - - +
86A ARG* 5.8 0.7 - - - +
98D GLU* 2.7 46.6 + - + +
99D GLN* 3.7 5.2 - - - +
101D SER* 1.3 72.1 - - - +
103D GLN* 1.3 70.4 + - + +
105D GLU* 3.6 10.5 - - - +
106D ALA* 2.9 22.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 103 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B GLN* 4.0 11.1 - - - +
99D GLN* 3.0 37.6 + - + +
100D LEU* 2.9 30.0 + - - +
102D ARG* 1.3 78.7 - - + +
104D HIS* 1.3 71.3 + - + +
105D GLU 2.7 2.1 + - - -
106D ALA* 2.8 12.5 + - - +
107D GLN* 3.1 21.2 + - - +
----------------------------------------------------------
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Residues in contact with HIS 104 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B GLN* 2.9 69.3 - - + +
85B GLN* 3.5 18.9 - - + -
86B ARG* 3.4 20.6 + - + +
100D LEU* 2.7 61.1 + - + +
101D SER* 4.2 5.9 + - - +
103D GLN* 1.3 74.2 - - + +
105D GLU* 1.3 63.1 + - - +
107D GLN* 3.4 11.4 + - - +
108D LEU* 2.9 19.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 105 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LYS* 3.7 46.0 - - - +
82A GLN* 4.1 8.1 + - - +
83A GLN* 5.8 0.2 - - - +
86A ARG* 3.5 22.6 + - - +
108C LEU* 4.6 11.9 - - + -
101D SER 3.0 16.8 + - - +
102D ARG* 3.6 11.3 - - - +
103D GLN 2.7 3.8 + - - -
104D HIS* 1.3 75.6 - - - +
106D ALA* 1.3 55.8 + - - +
108D LEU* 2.7 30.4 + - - +
109D HIS* 2.7 32.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA 106 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102D ARG 2.9 16.4 + - - +
103D GLN* 2.8 11.1 + - - +
105D GLU* 1.3 71.8 + - - +
107D GLN* 1.3 52.4 + - + +
109D HIS* 3.0 9.5 + - - +
110D GLU* 2.5 37.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 107 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B LEU* 4.1 28.0 - - + +
81B LYS* 3.8 23.8 + - - +
82B GLN* 3.6 15.8 - - - +
85B GLN* 5.1 2.8 + - - +
103D GLN* 3.4 18.8 - - + +
104D HIS* 3.4 17.3 - - - +
105D GLU 2.9 0.2 + - - -
106D ALA* 1.3 76.7 - - + +
108D LEU* 1.3 64.9 + - - +
109D HIS 2.8 0.5 + - - -
110D GLU* 2.8 18.2 + - - +
111D HIS* 2.8 24.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 108 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B LEU* 4.3 10.1 - - + -
78B LEU* 3.9 20.8 - - + +
82B GLN* 3.8 21.5 - - - +
105C GLU* 4.6 14.8 - - + -
108C LEU* 4.0 37.6 - - + +
109C HIS* 3.8 26.7 - - + +
112C ILE* 4.2 6.0 - - + +
104D HIS* 2.9 12.1 + - + +
105D GLU* 2.7 16.8 + - - +
107D GLN* 1.3 74.1 - - - +
109D HIS* 1.3 58.3 + - - +
111D HIS* 3.6 4.2 - - + +
112D ILE* 3.4 23.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS 109 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A LEU* 3.9 33.7 + - + +
76A LEU* 6.0 5.1 - - + +
78A LEU* 6.0 1.3 - - + -
79A LYS* 4.8 21.0 - - + +
108C LEU* 3.7 27.8 - - + +
105D GLU* 2.7 31.0 + - + +
106D ALA* 3.3 11.7 - - - +
108D LEU* 1.3 77.1 - - - +
110D GLU* 1.3 58.3 + - - +
111D HIS 3.0 1.1 - - - -
112D ILE* 2.5 35.1 + - + +
113D LYS* 3.1 8.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 110 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106D ALA 2.5 16.9 + - - +
107D GLN* 3.3 20.6 - - - +
109D HIS* 1.3 71.0 - - - +
111D HIS* 1.3 64.1 + - - +
113D LYS* 2.9 25.8 + - + +
114D GLN* 3.0 36.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 111 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B LEU* 4.1 21.8 + - + +
74B GLU* 4.9 3.4 - - + -
75B LEU* 3.0 63.0 + - + +
78B LEU* 4.8 8.1 - - + -
112C ILE* 3.4 19.0 - - + +
107D GLN 2.8 14.6 + - - +
108D LEU* 3.6 9.6 - - - +
110D GLU* 1.3 78.6 + - - +
112D ILE* 1.3 62.1 + - - +
114D GLN* 3.3 10.0 + - - +
115D GLN* 3.0 37.9 + - + +
----------------------------------------------------------
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Residues in contact with ILE 112 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A LEU* 4.0 25.1 - - + -
108C LEU* 4.6 8.3 - - + +
111C HIS* 3.6 25.8 - - + +
112C ILE* 3.1 37.2 - - + -
115C GLN* 3.6 26.9 + - + +
108D LEU 3.4 11.4 - - - +
109D HIS* 2.5 22.2 + - + +
111D HIS* 1.3 75.3 - - - +
113D LYS* 1.3 60.6 + - + +
115D GLN* 3.6 3.6 + - - +
116D GLN* 3.2 20.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 113 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109D HIS 3.1 8.5 + - - +
110D GLU* 2.9 18.2 + - + +
112D ILE* 1.3 78.7 - - + +
114D GLN* 1.3 66.2 - - - +
116D GLN* 3.0 33.8 - - - +
117D GLU* 3.3 25.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 114 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B LEU* 4.1 21.5 - - + -
74B GLU* 6.0 0.4 - - - +
110D GLU* 3.1 42.8 - - + +
111D HIS* 3.6 11.4 - - - +
112D ILE 3.2 0.2 - - - -
113D LYS* 1.3 78.8 + - - +
115D GLN* 1.3 55.2 + - - +
116D GLN 2.6 15.5 + - - -
117D GLU* 3.2 17.4 + - - +
118D MET* 3.1 20.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 115 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B LEU* 3.4 26.4 - - + +
112C ILE* 3.9 31.2 + - + +
113C LYS* 5.8 0.4 - - - +
115C GLN* 4.3 10.6 - - - +
116C GLN* 4.4 14.9 + - - +
111D HIS* 3.0 28.3 + - + +
112D ILE* 3.9 5.6 - - - +
114D GLN* 1.3 77.6 - - - +
116D GLN* 1.3 60.8 + - - +
118D MET* 4.2 9.5 - - + +
119D LEU* 3.5 33.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 116 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115C GLN* 4.4 14.0 + - - +
119C LEU* 3.8 26.4 - - + +
112D ILE 3.2 12.2 + - - +
113D LYS* 3.0 24.1 - - - +
114D GLN 2.6 5.7 + - - -
115D GLN* 1.3 71.8 - - - +
117D GLU* 1.3 74.4 + - - +
118D MET 3.0 1.6 + - - -
119D LEU* 3.1 5.9 + - - +
120D ALA* 2.6 37.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 117 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113D LYS* 3.8 24.0 - - - +
114D GLN* 3.2 18.4 + - - +
116D GLN* 1.3 97.7 + - - +
118D MET* 1.3 52.5 + - - +
120D ALA* 2.8 11.1 - - + +
121D MET* 2.6 37.4 + - - +
124D GLN* 4.1 2.4 + - - +
----------------------------------------------------------
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Residues in contact with MET 118 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B PRO* 5.3 2.2 - - + +
67B ARG* 4.4 22.7 - - + +
68B GLU* 3.2 50.9 - - + +
71B LEU* 4.1 22.4 - - + -
114D GLN 3.1 14.5 + - - +
115D GLN* 4.2 8.5 - - + +
116D GLN 3.0 0.8 + - - -
117D GLU* 1.3 74.9 - - - +
119D LEU* 1.3 98.7 + - + +
120D ALA 2.6 14.5 + - - -
121D MET* 3.7 1.9 - - - +
122D LYS* 2.8 33.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 119 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B GLU* 4.3 6.5 - - - +
115C GLN 4.9 0.7 - - - +
116C GLN* 3.7 44.9 - - + +
119C LEU* 4.7 19.3 - - + +
120C ALA* 5.2 3.8 - - + +
123C HIS* 6.0 0.2 - - - +
115D GLN* 3.5 30.6 + - - +
116D GLN 3.1 3.8 + - - +
118D MET* 1.3 103.7 - - + +
120D ALA* 1.3 64.6 + - - +
122D LYS* 3.3 28.6 - - + +
123D HIS* 3.8 8.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 120 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C LEU* 5.1 5.6 - - + +
116D GLN* 2.6 25.1 + - + +
117D GLU* 2.8 19.7 - - - +
118D MET 2.6 0.4 + - - -
119D LEU* 1.3 73.8 - - - +
121D MET* 1.3 53.2 + - - +
123D HIS* 2.7 11.4 + - - +
124D GLN* 2.5 47.3 + - + +
----------------------------------------------------------
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Residues in contact with MET 121 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117D GLU 2.6 16.9 + - - +
118D MET* 4.2 2.0 - - - +
120D ALA* 1.3 67.7 - - - +
122D LYS* 1.3 56.4 + - - +
123D HIS 2.8 10.6 + - - -
124D GLN* 2.9 37.4 + - + +
125D GLN* 3.0 47.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B PRO* 4.0 36.1 - - + +
65B ALA* 5.8 1.4 - - - +
68B GLU* 4.0 15.9 + - - +
118D MET* 2.8 25.5 + - + +
119D LEU* 3.3 44.8 - - + +
120D ALA 2.9 0.2 + - - -
121D MET* 1.3 69.6 - - - +
123D HIS* 1.3 70.6 + - + +
126D GLU* 4.0 14.1 - - - +
----------------------------------------------------------
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Residues in contact with HIS 123 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123C HIS* 2.7 70.3 + + + -
124C GLN* 3.8 15.9 + - + +
127C LEU* 3.7 26.4 - - + +
119D LEU 3.8 9.0 - - - +
120D ALA 2.7 6.6 + - - +
121D MET 2.8 3.4 + - - -
122D LYS* 1.3 92.1 + - + +
124D GLN* 1.3 53.7 + - - +
125D GLN 3.5 0.2 - - - -
126D GLU* 3.1 42.0 + - + +
127D LEU* 4.0 1.6 - - + +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123C HIS* 4.0 12.5 + - + -
117D GLU* 4.1 3.2 + - - +
120D ALA* 2.5 27.9 + - + +
121D MET* 2.9 56.6 - - + +
123D HIS* 1.3 76.2 - - - +
125D GLN* 1.3 73.3 + - + +
126D GLU 3.1 0.4 + - - -
127D LEU* 3.8 20.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121D MET* 3.0 42.7 + - + +
124D GLN* 1.3 83.6 - - + +
126D GLU* 1.3 54.9 + - - +
127D LEU* 2.8 8.3 - - - +
128D LEU* 2.8 46.7 + - + +
129D GLU* 3.0 29.5 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il