Contacts of the helix formed by residues 154 - 180 (chain B) in PDB entry 2Q7N


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 154 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    204A  THR*     3.9    18.6    +      -       -      +
    209A  GLN*     3.1    50.3    +      -       -      +
    210A  ASP*     4.0     7.4    -      -       -      -
    276A  GLY      5.2     0.2    -      -       -      +
    152B  GLY      3.2     3.6    +      -       -      -
    153B  LYS*     1.3    94.9    +      -       -      +
    155B  VAL*     1.3    71.2    +      -       -      +
    156B  PHE*     2.7     7.0    +      -       +      +
    157B  GLN*     2.8    39.4    +      -       +      +
    158B  LYS*     3.0     8.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 155 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  GLN*     4.2     3.8    -      -       -      +
    210A  ASP*     2.7    26.9    +      -       -      +
    278A  VAL*     3.2    37.9    -      -       +      +
    280A  PHE*     4.2    20.2    -      -       +      -
    104B  LEU*     4.3    22.5    -      -       +      +
    153B  LYS      3.4     4.8    +      -       -      -
    154B  ASP*     1.3    74.4    -      -       -      +
    156B  PHE*     1.3    74.1    +      -       -      +
    158B  LYS*     2.8    18.9    +      -       -      +
    159B  LYS*     3.1    12.6    +      -       -      +
     13D  ALA*     3.5    27.0    -      -       +      +
     14D  ILE*     4.9     4.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 156 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  GLN*     4.2     4.7    -      -       -      +
    265A  ASN*     4.7     7.2    -      -       +      -
    267A  ILE*     3.5    26.0    -      -       +      -
    274A  VAL*     4.5     9.0    -      -       +      -
    275A  TYR      4.4     1.3    -      -       -      -
    276A  GLY*     3.0    51.1    -      -       -      +
    277A  THR*     3.8     4.5    -      -       -      -
    278A  VAL*     3.6    24.2    -      -       +      +
     52B  PHE*     4.3    15.0    -      +       -      -
     59B  LEU*     3.7    29.2    -      -       +      -
    154B  ASP*     2.7     6.0    +      -       +      -
    155B  VAL*     1.3    77.8    -      -       -      +
    157B  GLN*     1.3    72.1    +      -       -      +
    159B  LYS*     2.6    36.8    +      -       +      +
    160B  LYS*     3.1    11.5    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 157 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203A  GLU*     5.9     6.8    +      -       -      +
    204A  THR*     5.8     3.8    -      -       -      +
    205A  ASN*     5.7     2.6    +      -       -      -
    274A  VAL      5.5     3.4    +      -       -      -
    275A  TYR*     5.6     4.0    -      -       -      +
    276A  GLY      4.7     5.9    +      -       -      +
    152B  GLY      3.6    17.0    -      -       -      +
    154B  ASP*     2.8    35.5    +      -       +      +
    156B  PHE*     1.3    95.1    -      -       -      +
    158B  LYS*     1.3    54.3    +      -       -      +
    160B  LYS*     2.7    22.2    +      -       -      +
    161B  LEU*     2.6    49.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 158 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B  TYR*     3.5     7.3    +      -       -      -
     97B  ILE*     4.9     2.1    -      -       -      +
    100B  ASP*     2.7    47.3    +      -       +      +
    101B  GLN*     5.3     1.6    +      -       -      -
    104B  LEU*     6.0     3.4    -      -       +      -
    149B  ASP*     3.9    16.5    +      -       -      +
    151B  SER*     3.9    14.8    -      -       -      +
    152B  GLY*     4.7     5.8    -      -       -      -
    153B  LYS      3.7    19.1    -      -       -      +
    154B  ASP      3.0     4.9    +      -       -      +
    155B  VAL*     2.8    14.4    +      -       -      +
    157B  GLN*     1.3    76.5    -      -       -      +
    159B  LYS*     1.3    59.9    +      -       +      +
    161B  LEU*     4.5     6.6    -      -       -      +
    162B  GLY*     3.4    14.9    +      -       -      -
      9D  ASN*     3.1    33.6    +      -       -      +
     11D  THR*     3.8    14.6    -      -       -      -
     14D  ILE*     3.6    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 159 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    262A  SER*     2.6    41.4    +      -       -      -
    263A  GLY      3.8     1.6    +      -       -      -
    265A  ASN*     2.7    25.3    +      -       -      +
    278A  VAL*     3.8    12.8    -      -       -      -
     44B  TYR*     3.4    11.2    +      -       -      -
     48B  GLN*     2.7    47.1    +      -       +      +
     52B  PHE*     3.8    17.3    -      -       +      -
    101B  GLN*     5.2     1.1    -      -       -      +
    104B  LEU*     4.5    13.5    -      -       +      -
    155B  VAL      3.6     7.9    -      -       -      +
    156B  PHE*     2.6    21.2    +      -       -      +
    158B  LYS*     1.3    70.6    -      -       -      +
    160B  LYS*     1.3    51.0    +      -       -      +
    162B  GLY      3.1     1.7    +      -       -      -
    163B  CYS*     2.6    38.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 160 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273A  ASP*     3.5    24.0    +      -       -      -
    274A  VAL*     4.1    20.0    +      -       -      +
     52B  PHE*     4.3     1.4    -      -       -      -
     58B  LYS      4.4    11.6    +      -       -      -
     59B  LEU*     3.5    42.0    -      -       +      +
    156B  PHE*     3.1    10.7    +      -       +      +
    157B  GLN*     2.7    31.2    +      -       -      +
    159B  LYS*     1.3    72.9    -      -       -      +
    161B  LEU*     1.3    54.2    +      -       +      +
    163B  CYS*     2.9     7.8    +      -       -      +
    164B  GLN*     2.6    64.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 161 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64B  VAL*     4.6    16.6    -      -       +      +
     97B  ILE*     4.5     6.4    -      -       +      +
    148B  PRO*     5.1    16.5    -      -       +      +
    149B  ASP*     4.6    17.3    -      -       -      +
    152B  GLY*     4.5    17.7    -      -       -      +
    157B  GLN*     2.6    38.1    +      -       +      +
    158B  LYS*     4.5     4.9    -      -       -      +
    160B  LYS*     1.3    74.3    -      -       +      +
    162B  GLY*     1.3    56.4    +      -       -      +
    164B  GLN*     4.1    18.2    -      -       -      +
    165B  LEU*     3.2    26.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 162 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B  TYR*     3.5    10.9    -      -       -      -
     97B  ILE*     3.7    32.3    -      -       -      +
    158B  LYS      3.4     6.2    +      -       -      -
    159B  LYS      3.1     6.5    +      -       -      -
    161B  LEU*     1.3    75.9    -      -       -      +
    163B  CYS*     1.3    60.3    +      -       -      +
    164B  GLN      3.2     2.0    -      -       -      -
    165B  LEU*     4.0     1.3    -      -       -      +
    166B  LEU*     3.2    35.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 163 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41B  PHE*     3.5     6.7    -      -       -      -
     44B  TYR*     3.4    14.8    -      -       +      -
     45B  TYR*     3.7    22.4    -      -       -      -
     48B  GLN*     5.3     0.2    -      -       -      -
     52B  PHE*     4.0     8.7    -      -       +      -
     60B  CYS*     2.0    64.0    -      -       -      +
    159B  LYS      2.6    21.3    +      -       -      +
    160B  LYS*     3.4     9.0    -      -       -      +
    162B  GLY*     1.3    72.7    -      -       -      +
    164B  GLN*     1.3    63.4    +      -       -      +
    166B  LEU*     4.8     1.1    -      -       -      -
    167B  GLY      3.3    12.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 164 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58B  LYS      4.9     1.7    -      -       -      +
     59B  LEU      3.7    13.3    -      -       -      +
     60B  CYS*     4.4     1.3    -      -       -      +
     61B  GLY*     3.2    28.3    +      -       -      +
     63B  ASN*     4.5     8.3    +      -       -      +
     64B  VAL*     4.1    31.0    -      -       +      +
    160B  LYS*     2.6    48.6    +      -       -      +
    161B  LEU*     4.1    18.6    -      -       -      +
    163B  CYS*     1.3    73.1    -      -       -      +
    165B  LEU*     1.3    57.4    +      -       -      +
    167B  GLY*     2.7    21.7    +      -       -      -
    168B  LYS*     3.0    13.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 165 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64B  VAL*     3.9    19.0    -      -       +      +
     67B  PHE*     5.1     2.6    -      -       +      -
     89B  TYR*     4.5    11.7    -      -       +      -
     90B  LEU*     4.3    25.2    -      -       +      +
     93B  SER*     3.8    32.1    -      -       -      +
     94B  LEU*     4.4     7.4    -      -       +      +
     97B  ILE*     3.5    31.6    -      -       +      -
    148B  PRO*     4.5     9.6    -      -       +      -
    161B  LEU      3.2    16.9    +      -       -      +
    162B  GLY      4.2     1.6    -      -       -      +
    164B  GLN*     1.3    79.5    -      -       -      +
    166B  LEU*     1.3    75.4    +      -       +      +
    167B  GLY      3.1     0.3    +      -       -      -
    168B  LYS*     3.2     2.6    +      -       -      +
    169B  TYR*     2.9    21.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 166 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40B  LEU*     3.8    35.4    -      -       +      +
     41B  PHE*     3.6    18.8    -      -       +      +
     44B  TYR*     3.4    37.9    -      -       +      -
     94B  LEU*     4.5    17.0    -      -       +      -
     97B  ILE*     5.2     4.3    -      -       +      -
    115B  LEU*     5.0     5.4    -      -       +      -
    162B  GLY      3.2    17.0    +      -       -      +
    163B  CYS*     4.6     0.9    -      -       -      -
    165B  LEU*     1.3    92.4    -      -       +      +
    167B  GLY*     1.3    61.8    +      -       -      +
    169B  TYR*     3.4    14.7    -      -       +      +
    170B  LYS*     3.0    24.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 167 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41B  PHE*     3.4    20.8    -      -       -      -
     60B  CYS      4.3     7.0    -      -       -      -
     62B  PRO*     4.0    13.6    -      -       -      +
    163B  CYS      3.3     6.8    +      -       -      -
    164B  GLN      2.7    10.5    +      -       -      -
    166B  LEU*     1.3    77.3    -      -       -      +
    168B  LYS*     1.3    64.0    +      -       -      -
    170B  LYS*     3.3     6.7    -      -       -      +
    171B  GLN*     3.0    20.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 168 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62B  PRO*     3.7    30.3    +      -       -      +
     63B  ASN*     4.5     7.7    +      -       -      +
     64B  VAL*     4.7    13.2    -      -       +      +
     67B  PHE*     3.5    48.5    -      -       +      -
    164B  GLN      3.0     9.7    +      -       -      +
    165B  LEU      3.8     5.6    -      -       -      +
    167B  GLY*     1.3    70.0    -      -       -      +
    169B  TYR*     1.3    59.6    +      -       -      +
    171B  GLN*     2.6    48.8    +      -       -      +
    172B  ILE*     2.7    22.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 169 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33B  LEU*     3.2    35.9    +      -       +      +
     36B  SER*     3.8     0.3    +      -       -      -
     37B  ALA*     3.9    24.5    -      -       +      -
     40B  LEU*     4.0    21.8    -      -       +      -
     41B  PHE*     6.2     0.2    -      -       +      -
     67B  PHE*     5.1     0.4    -      -       -      -
     90B  LEU*     3.8    41.5    -      -       +      +
     94B  LEU*     6.4     1.6    -      -       +      -
    118B  THR*     3.2    25.5    -      -       +      +
    122B  LEU*     5.5     2.5    -      -       +      -
    165B  LEU      2.9    17.5    +      -       -      +
    166B  LEU*     3.4    20.9    -      -       +      +
    168B  LYS*     1.3    69.2    -      -       -      +
    170B  LYS*     1.3    74.7    +      -       +      +
    172B  ILE*     2.9    18.1    +      -       +      +
    173B  ILE*     2.9    41.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 170 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  ASN*     4.9     0.2    +      -       -      -
     37B  ALA*     4.4     5.8    -      -       +      +
     38B  ASN*     3.4    47.0    -      -       +      +
     41B  PHE*     4.5    23.9    -      -       +      -
     62B  PRO*     6.6     0.4    -      -       +      -
    166B  LEU      3.0     9.8    +      -       -      +
    167B  GLY*     3.3    11.0    -      -       -      +
    169B  TYR*     1.3    86.3    -      -       +      +
    171B  GLN*     1.3    64.0    +      -       -      +
    173B  ILE*     3.6    17.4    -      -       -      +
    174B  ALA*     3.9     9.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 171 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62B  PRO*     4.1    24.7    +      -       +      +
    167B  GLY      3.0    12.3    +      -       -      +
    168B  LYS*     2.6    41.6    +      -       -      +
    170B  LYS*     1.3    77.6    -      -       -      +
    172B  ILE*     1.3    65.2    +      -       -      +
    174B  ALA*     4.2     7.3    -      -       -      +
    175B  VAL*     3.6    15.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 172 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67B  PHE*     3.8    26.2    -      -       +      -
     70B  PHE*     5.1    14.8    -      -       +      -
     86B  ILE*     4.2    18.8    -      -       +      -
     90B  LEU*     5.5     3.1    -      -       +      -
    168B  LYS*     2.7    27.4    +      -       +      +
    169B  TYR*     2.9     5.4    +      -       +      +
    171B  GLN*     1.3    83.7    -      -       -      +
    173B  ILE*     1.3    70.6    +      -       +      +
    174B  ALA      3.0     2.2    -      -       -      -
    175B  VAL*     3.0    29.7    +      -       +      +
    176B  LEU*     3.0    33.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 173 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30B  LEU*     4.2     9.6    -      -       +      +
     33B  LEU*     3.6    33.7    -      -       +      -
     34B  ASN*     2.9    43.3    -      -       +      +
     37B  ALA*     4.2    11.9    -      -       +      -
     90B  LEU*     5.8     2.7    -      -       +      -
    122B  LEU*     5.8     2.0    -      -       +      -
    169B  TYR*     2.9    30.1    +      -       +      +
    170B  LYS      3.6    13.9    -      -       -      +
    172B  ILE*     1.3    78.5    -      -       +      +
    174B  ALA*     1.3    59.3    +      -       -      +
    176B  LEU*     4.1    16.2    -      -       +      -
    177B  ALA*     2.9    35.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 174 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  ASN*     3.2    20.4    -      -       -      +
    170B  LYS      3.9    13.7    -      -       -      +
    171B  GLN*     4.2     7.4    -      -       -      +
    172B  ILE      3.0     0.4    -      -       -      -
    173B  ILE*     1.3    77.8    -      -       -      +
    175B  VAL*     1.3    66.0    +      -       +      +
    177B  ALA*     4.9     1.1    -      -       -      +
    178B  GLN*     3.9    15.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 175 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70B  PHE*     5.0    15.7    -      -       +      -
     72B  ALA*     6.2     3.8    -      -       +      -
    171B  GLN*     3.6    17.5    -      -       -      +
    172B  ILE*     3.0    23.3    +      -       +      +
    174B  ALA*     1.3    75.9    -      -       +      +
    176B  LEU*     1.3    71.2    +      -       +      +
    177B  ALA      2.6     0.3    +      -       -      -
    178B  GLN*     2.5    31.8    +      -       -      +
    179B  ALA*     3.5     7.0    +      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 176 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30B  LEU*     3.6    21.1    -      -       +      +
     70B  PHE*     3.5    44.0    -      -       +      -
     83B  LEU*     3.8    26.0    -      -       +      -
     86B  ILE*     4.1    17.9    -      -       +      -
     87B  VAL*     5.9     0.2    -      -       +      -
     90B  LEU*     6.1     0.2    -      -       +      -
    172B  ILE*     3.0    34.4    +      -       +      +
    173B  ILE*     3.5    21.8    -      -       +      +
    175B  VAL*     1.3    77.7    -      -       +      +
    177B  ALA*     1.3    59.4    +      -       -      +
    178B  GLN      3.1     4.7    +      -       -      -
    179B  ALA*     3.1    20.0    +      -       -      +
    180B  PHE*     3.7     7.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 177 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27B  ARG*     5.4     5.4    -      -       -      +
     30B  LEU*     3.8    16.8    -      -       +      +
     31B  ALA*     3.5    45.2    -      -       +      +
     34B  ASN*     4.5     8.5    -      -       +      -
    173B  ILE*     2.9    16.6    +      -       +      +
    174B  ALA      4.9     1.6    -      -       -      +
    175B  VAL      2.6     4.4    +      -       -      -
    176B  LEU*     1.3    70.6    -      -       -      +
    178B  GLN*     1.3    55.7    +      -       -      -
    180B  PHE      4.5     5.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 178 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    174B  ALA      3.9    12.7    +      -       -      +
    175B  VAL*     2.5    24.4    +      -       +      +
    177B  ALA*     1.3    74.5    -      -       -      +
    179B  ALA*     1.3    63.8    +      -       -      +
    180B  PHE*     3.4     2.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 179 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70B  PHE*     4.1    21.8    -      -       +      -
     72B  ALA*     4.3    13.9    -      -       -      +
     79B  LYS*     4.4     9.4    +      -       +      +
    175B  VAL*     3.5     7.3    +      -       +      +
    176B  LEU*     3.1    11.2    +      -       -      +
    178B  GLN*     1.3    83.0    -      -       -      +
    180B  PHE*     1.3    69.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 180 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23B  MET*     4.4    10.5    -      -       +      +
     26B  ILE*     4.1    20.2    -      -       +      +
     27B  ARG*     3.5    46.8    +      -       -      +
     30B  LEU*     3.9    22.8    -      -       +      +
     70B  PHE*     4.1    19.5    -      +       -      -
     79B  LYS*     3.7    40.2    -      -       +      +
     80B  LEU*     3.4    32.3    -      -       +      -
     83B  LEU*     3.6    32.3    -      -       +      -
    176B  LEU*     3.7    21.8    -      -       +      +
    177B  ALA      4.5     7.1    -      -       -      +
    178B  GLN      3.4     2.1    -      -       -      -
    179B  ALA*     1.3    85.2    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il