Contacts of the helix formed by residues 147 - 172 (chain C) in PDB entry 4AY1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 147 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C TRP* 3.4 25.8 - - + +
146C TYR* 1.3 90.0 - - + +
148C ASP* 1.3 71.0 + - - +
150C LYS* 4.0 1.4 + - - +
151C GLU* 3.0 42.8 + - + +
155C PHE* 3.7 32.5 - - + -
194C SER* 3.8 22.7 - - - +
195C TYR* 4.1 17.7 - - + +
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Residues in contact with ASP 148 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146C TYR* 3.3 6.3 - - + +
147C PRO* 1.3 82.8 - - - +
149C GLN* 1.3 76.2 + - - +
150C LYS* 4.4 4.9 - - + +
152C ASN* 3.0 13.5 + - - +
190C MET* 3.5 25.7 - - - +
193C ASN* 2.8 39.9 + - - +
194C SER* 2.8 23.7 + - - -
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Residues in contact with GLN 149 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C ASP* 1.3 86.0 + - - +
150C LYS* 1.3 65.0 + - - +
151C GLU 3.3 0.5 + - - -
152C ASN* 3.5 11.8 + - - +
153C THR 5.0 0.3 + - - -
193C ASN* 3.6 42.5 + - + +
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Residues in contact with LYS 150 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C HIS* 6.3 1.6 - - - -
147C PRO 4.6 1.6 - - - +
148C ASP* 3.3 4.0 - - + +
149C GLN* 1.3 80.4 - - - +
151C GLU* 1.3 79.4 + - + +
152C ASN 3.9 0.3 + - - -
153C THR* 5.0 3.1 + - - -
154C HIS* 5.2 3.3 + - - -
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Residues in contact with GLU 151 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C SER* 4.2 13.6 - - - +
112C HIS* 2.3 35.0 + - - -
144C TRP* 3.5 27.2 - - + -
147C PRO* 3.0 22.5 + - + +
150C LYS* 1.3 95.9 - - + +
152C ASN* 1.3 67.5 + - - +
153C THR 3.2 2.7 - - - +
154C HIS* 2.9 36.2 + - - +
155C PHE* 2.9 22.5 + - - +
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Residues in contact with ASN 152 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C PRO* 4.2 1.6 - - - -
148C ASP 3.0 17.4 + - - +
149C GLN* 3.5 11.0 + - - +
151C GLU* 1.3 78.7 - - - +
153C THR* 1.3 64.5 + - - +
155C PHE* 3.3 2.1 + - - +
156C THR* 3.1 20.1 + - - -
192C ASP 4.6 2.6 + - - -
193C ASN 3.0 20.5 + - - +
194C SER 3.3 26.1 - - - +
195C TYR 3.5 9.7 + - - +
196C GLN* 2.5 38.9 + - - +
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Residues in contact with THR 153 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149C GLN 5.0 0.2 + - - -
150C LYS 5.0 3.7 + - - -
151C GLU 3.2 0.8 - - - -
152C ASN* 1.3 82.3 + - - +
154C HIS* 1.3 63.2 + - + +
156C THR* 3.2 2.3 + - - -
157C VAL* 2.9 47.6 + - + +
196C GLN* 4.3 11.6 + - - +
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Residues in contact with HIS 154 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C HIS* 4.3 1.6 - + - -
115C VAL* 3.5 38.6 + - + +
116C ASP* 3.2 29.8 + - - -
121C ARG* 4.8 6.7 + - - -
144C TRP* 4.2 5.7 - - + -
150C LYS 5.2 2.7 + - - -
151C GLU* 2.9 36.3 + - - +
153C THR* 1.3 84.0 - - + +
155C PHE* 1.3 57.7 + - - +
157C VAL* 3.6 6.5 + - + +
158C LEU* 2.9 29.3 + - - +
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Residues in contact with PHE 155 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C VAL* 4.1 12.1 - - + -
144C TRP* 3.6 43.2 - + + -
147C PRO* 3.7 22.7 - - + -
151C GLU 2.9 15.3 + - - +
152C ASN 3.6 3.4 - - - +
154C HIS* 1.3 75.4 - - - +
156C THR* 1.3 69.5 + - - +
158C LEU* 3.3 3.7 + - + +
159C ILE* 3.0 53.3 + - + +
182C ALA* 4.3 17.9 - - + -
183C GLY 5.7 0.9 - - - -
184C VAL* 5.1 1.8 - - + -
194C SER 4.6 3.6 - - - -
195C TYR* 3.8 30.1 - + - -
200C LEU* 3.9 25.6 - - + -
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Residues in contact with THR 156 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C ASN* 3.1 13.2 + - - -
153C THR* 3.6 7.4 - - - -
155C PHE* 1.3 86.3 - - - +
157C VAL* 1.3 66.6 + - + +
159C ILE* 3.9 4.3 - - - +
160C HIS* 3.0 26.0 + - + +
195C TYR* 5.5 0.2 - - - -
196C GLN* 3.2 42.1 + - - +
199C LYS* 4.4 28.3 - - + +
200C LEU* 5.0 7.1 - - + +
203C ASP* 4.8 1.7 - - - +
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Residues in contact with VAL 157 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121C ARG* 3.8 20.4 - - - +
153C THR* 2.9 35.9 + - + +
154C HIS* 3.9 7.0 - - + +
156C THR* 1.3 78.7 - - + +
158C LEU* 1.3 62.0 + - - +
160C HIS* 3.3 5.4 + - + +
161C GLU* 2.9 49.7 + - + +
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Residues in contact with LEU 158 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C PHE* 4.3 17.5 - - + -
114C MET* 4.1 35.0 - - + -
115C VAL* 4.3 11.2 - - + -
121C ARG* 4.5 16.5 - - + +
124C PHE* 4.2 14.1 - - + -
125C ILE* 4.7 7.2 - - + -
142C VAL* 4.6 10.8 - - + -
144C TRP* 4.5 7.2 - - + -
154C HIS 2.9 19.3 + - - +
155C PHE* 3.3 4.5 + - + +
157C VAL* 1.3 75.9 - - - +
159C ILE* 1.3 59.5 + - + +
161C GLU* 3.2 3.1 + - - +
162C LEU* 2.9 53.5 + - + +
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Residues in contact with ILE 159 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142C VAL* 4.1 26.7 - - + -
155C PHE* 3.0 55.7 + - + +
156C THR 3.9 2.9 - - - +
158C LEU* 1.3 78.2 - - + +
160C HIS* 1.3 57.3 + - - +
162C LEU* 3.3 9.0 + - + +
163C ALA* 2.9 27.9 + - - +
180C LEU* 3.6 6.4 - - + +
182C ALA* 5.2 0.9 - - + -
200C LEU* 4.1 13.9 - - + -
203C ASP* 3.5 25.1 - - + +
204C LEU* 3.7 27.1 - - + -
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Residues in contact with HIS 160 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C THR* 3.0 22.1 + - + +
157C VAL* 3.7 6.1 - - + +
158C LEU 3.3 0.2 - - - -
159C ILE* 1.3 75.5 - - - +
161C GLU* 1.3 66.1 + - + +
163C ALA* 3.3 2.8 + - - +
164C GLU* 2.9 66.1 + - + +
199C LYS* 6.3 1.0 - - - +
203C ASP* 3.4 30.7 + - - +
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Residues in contact with GLU 161 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118C SER* 5.5 2.2 - - - +
121C ARG* 2.9 47.0 + - - +
122C LEU 5.3 0.3 + - - -
125C ILE* 3.5 18.1 - - + +
157C VAL* 2.9 34.5 + - + +
158C LEU 3.9 1.8 - - - +
160C HIS* 1.3 80.0 - - + +
162C LEU* 1.3 65.1 + - - +
164C GLU* 3.6 7.6 - - + +
165C ALA* 3.0 25.8 + - - +
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Residues in contact with LEU 162 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C PHE* 4.6 6.7 - - + -
125C ILE* 3.8 27.3 - - + +
128C ILE* 4.3 6.5 - - + -
140C LEU* 3.9 24.2 - - + -
142C VAL* 4.0 13.9 - - + -
158C LEU* 2.9 39.5 + - + +
159C ILE* 3.6 7.2 - - - +
161C GLU* 1.3 78.4 - - - +
163C ALA* 1.3 56.3 + - - +
165C ALA* 3.3 2.6 + - - -
166C PHE* 2.9 62.0 + - + -
180C LEU* 3.9 16.2 - - + -
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Residues in contact with ALA 163 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C ILE 2.9 17.9 + - - +
160C HIS 3.6 4.7 - - - +
162C LEU* 1.3 77.3 - - - +
164C GLU* 1.3 63.2 + - + +
166C PHE* 3.3 6.2 + - - +
167C GLN* 3.0 24.5 + - - +
177C ARG* 5.6 0.5 - - - -
180C LEU* 3.7 7.8 - - + +
203C ASP* 3.7 39.7 - - + +
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Residues in contact with GLU 164 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160C HIS* 2.9 60.8 + - + +
161C GLU* 3.6 8.3 - - + +
163C ALA* 1.3 77.4 - - - +
165C ALA* 1.3 57.7 + - - +
167C GLN* 3.2 7.8 + - - +
168C LYS* 2.8 30.0 + - - +
203C ASP* 5.4 0.3 - - - +
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Residues in contact with ALA 165 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C ILE* 3.4 33.0 - - + -
126C ASN* 6.0 0.4 - - - +
129C ILE* 3.8 12.1 - - + +
161C GLU 3.0 13.5 + - - +
162C LEU 3.8 2.0 - - - +
164C GLU* 1.3 73.7 - - - +
166C PHE* 1.3 61.5 + - - +
168C LYS* 3.8 7.1 - - - +
169C ASP* 2.8 31.9 + - - +
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Residues in contact with PHE 166 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C ILE* 3.7 24.9 - - + -
129C ILE* 3.7 28.7 - - + -
132C LEU* 4.1 9.6 - - + -
140C LEU* 4.2 7.0 - - + -
162C LEU* 2.9 37.1 + - + +
163C ALA* 3.7 5.6 - - - +
165C ALA* 1.3 77.8 - - + +
167C GLN* 1.3 62.0 + - - +
169C ASP* 3.6 6.5 + - - +
170C PHE* 3.1 22.0 + - - +
177C ARG* 3.7 12.7 - - + +
178C LEU* 3.4 40.2 + - + +
179C LEU 3.4 20.0 - - - -
180C LEU* 4.0 23.8 - - + -
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Residues in contact with GLN 167 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163C ALA 3.0 14.2 + - - +
164C GLU* 3.5 9.6 - - - +
166C PHE* 1.3 76.8 - - - +
168C LYS* 1.3 64.3 + - - +
170C PHE* 3.0 25.4 + - - +
171C THR* 3.2 38.3 + - + +
177C ARG* 3.6 22.7 + - - +
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Residues in contact with LYS 168 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164C GLU 2.8 16.9 + - - +
165C ALA* 3.3 8.0 + - - +
167C GLN* 1.3 78.4 - - - +
169C ASP* 1.3 62.2 + - - +
171C THR* 3.0 24.4 + - - +
172C LYS* 3.2 43.4 + - + +
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Residues in contact with ASP 169 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C ILE* 3.6 33.9 - - + +
133C ARG* 2.7 35.7 + - - +
165C ALA 2.8 21.9 + - - +
166C PHE* 3.8 6.3 - - - +
168C LYS* 1.3 73.2 - - - +
170C PHE* 1.3 63.9 + - - +
172C LYS* 3.2 7.9 + - - +
173C SER* 3.0 29.7 + - - -
178C LEU* 4.3 5.3 + - - +
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Residues in contact with PHE 170 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ARG* 5.2 0.4 - - - +
166C PHE 3.1 14.2 + - - +
167C GLN* 3.0 29.5 + - - +
169C ASP* 1.3 81.7 + - - +
171C THR* 1.3 61.8 + - + +
173C SER* 3.0 31.0 + - - +
174C THR 5.9 0.4 - - - -
175C LYS 3.3 26.2 - - - -
176C GLU* 4.3 6.7 - - - -
177C ARG* 3.3 35.4 - - + +
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Residues in contact with THR 171 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167C GLN* 3.4 35.4 - - + +
168C LYS* 3.0 17.4 + - - +
170C PHE* 1.3 81.5 - - + +
172C LYS* 1.3 66.3 + - - +
173C SER 3.2 5.0 + - - +
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Residues in contact with LYS 172 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168C LYS* 3.2 44.3 + - + +
169C ASP* 3.2 6.8 + - - +
170C PHE 3.1 1.0 - - - -
171C THR* 1.3 84.5 + - - +
173C SER* 1.3 58.9 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il