Contacts of the helix formed by residues 973 - 1014 (chain B) in PDB entry 5LPN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 973 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
948B GLU* 4.7 7.7 + - - +
952B LEU* 3.3 34.2 - - + +
969B LEU 3.2 6.8 + - - +
972B GLY* 1.3 78.2 - - - +
974B LEU* 1.3 69.1 + - - +
975B LEU 3.1 3.5 + - - -
976B GLN* 3.5 13.0 + - - +
977B LEU* 3.5 10.8 + - + +
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Residues in contact with LEU 974 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
949B GLY* 5.9 3.1 - - - +
952B LEU* 5.1 12.7 - - + +
953B GLU* 5.9 8.7 - - + +
956B LEU* 6.1 1.6 - - + -
969B LEU 4.5 1.2 + - - -
970B TRP* 3.2 38.9 + - + +
973B GLN* 1.3 78.3 - - - +
975B LEU* 1.3 57.0 + - - +
977B LEU* 3.3 11.9 - - + +
978B VAL* 3.0 32.3 + - + +
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Residues in contact with LEU 975 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A ILE* 6.2 0.7 - - + -
78A TYR* 3.1 28.0 - - - +
970B TRP* 3.1 46.5 + - + +
971B VAL* 3.9 31.0 - - + +
973B GLN 3.1 0.8 + - - -
974B LEU* 1.3 74.1 - - - +
976B GLN* 1.3 63.6 + - + +
978B VAL* 2.8 20.2 + - + +
979B ASP* 2.5 43.0 - - - +
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Residues in contact with GLN 976 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
971B VAL 4.8 4.5 - - - +
972B GLY 4.4 16.9 - - - +
973B GLN* 3.5 5.6 + - - +
975B LEU* 1.3 80.8 - - + +
977B LEU* 1.3 62.6 + - - +
979B ASP* 3.2 9.1 + - - +
980B LYS* 2.9 22.9 + - - +
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Residues in contact with LEU 977 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
945B LEU* 3.6 36.1 - - + +
948B GLU* 3.8 15.0 - - - +
949B GLY* 3.6 12.3 - - - +
952B LEU* 3.6 30.7 - - + -
973B GLN* 3.5 9.8 + - + +
974B LEU* 3.3 13.9 + - + +
975B LEU 3.1 0.4 - - - -
976B GLN* 1.3 77.9 - - - +
978B VAL* 1.3 67.4 + - + +
980B LYS* 3.2 9.0 + - - +
981B LYS* 2.9 52.7 + - + +
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Residues in contact with VAL 978 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A ILE* 3.9 21.5 - - + +
45A ASP* 3.2 27.1 - - - +
46A PHE* 3.9 4.3 - - + -
63A TRP* 3.9 28.0 - - + -
78A TYR* 5.3 2.0 - - + +
970B TRP* 4.6 4.7 - - + +
974B LEU* 3.0 22.2 + - + +
975B LEU* 2.8 19.5 + - + +
977B LEU* 1.3 76.4 - - + +
979B ASP* 1.3 60.2 + - - +
981B LYS* 3.1 12.7 - - - +
982B ASN* 2.9 23.6 + - - +
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Residues in contact with ASP 979 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A TRP* 6.1 0.7 - - - -
78A TYR* 4.0 15.4 + - - -
975B LEU* 2.5 44.1 + - - +
976B GLN* 3.2 8.7 + - - +
978B VAL* 1.3 79.7 - - - +
980B LYS* 1.3 64.7 + - - +
982B ASN* 2.9 9.3 + - + +
983B SER* 2.9 27.1 + - - -
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Residues in contact with LYS 980 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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945B LEU* 3.5 19.7 - - + -
976B GLN 2.9 13.5 + - - +
977B LEU* 3.4 11.2 - - - +
979B ASP* 1.3 75.2 - - - +
981B LYS* 1.3 63.4 + - - +
983B SER* 3.1 9.2 + - - -
984B LEU* 3.0 27.2 + - + +
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Residues in contact with LYS 981 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A ASP* 3.4 29.7 + - - +
46A PHE* 3.7 19.7 + - + -
942B LEU* 3.7 18.3 - - + +
945B LEU* 3.8 17.6 - - + +
946B GLU* 3.8 46.8 + - - +
949B GLY* 5.6 2.0 - - - -
977B LEU* 2.9 39.5 + - + +
978B VAL* 3.1 14.6 - - - +
980B LYS* 1.3 74.6 - - - +
982B ASN* 1.3 63.5 + - - +
984B LEU* 3.1 5.5 + - - +
985B VAL* 3.0 24.3 + - - +
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Residues in contact with ASN 982 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A LYS* 3.0 29.0 + - - +
46A PHE* 4.0 8.1 - - + -
61A GLN* 3.1 13.1 + - - +
63A TRP* 3.8 24.3 - - + -
978B VAL 2.9 14.0 + - - +
979B ASP* 2.9 12.7 + - - +
981B LYS* 1.3 75.6 - - - +
983B SER* 1.3 59.9 + - - +
985B VAL* 3.0 4.7 + - - +
986B ALA* 2.9 25.0 + - - +
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Residues in contact with SER 983 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
979B ASP 2.9 16.5 + - - -
980B LYS* 3.1 14.7 + - - -
982B ASN* 1.3 78.0 - - - +
984B LEU* 1.3 60.5 + - - +
986B ALA* 3.6 8.8 - - - +
987B GLU* 3.0 23.7 + - - +
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Residues in contact with LEU 984 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
934B ARG* 4.6 7.0 - - - +
938B ILE* 3.8 41.2 - - + +
941B ALA* 3.7 28.0 - - + -
942B LEU* 3.7 29.2 - - + +
945B LEU* 4.2 12.1 - - + -
980B LYS* 3.0 16.6 + - + +
981B LYS 3.1 9.6 + - - +
983B SER* 1.3 77.5 - - - +
985B VAL* 1.3 62.4 + - - +
987B GLU* 3.2 13.4 + - - +
988B GLU* 3.0 20.8 + - - +
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Residues in contact with VAL 985 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6A TYR* 5.1 1.8 - - - +
9A LEU* 4.0 22.4 - - + -
46A PHE* 4.2 21.8 - - + -
48A ILE* 4.7 12.6 - - + -
59A LYS* 4.7 7.2 - - + +
61A GLN* 3.7 22.0 - - - +
942B LEU* 4.2 20.9 - - + -
981B LYS 3.0 15.2 + - - +
982B ASN 3.5 5.8 - - - +
984B LEU* 1.3 74.6 - - - +
986B ALA* 1.3 63.8 + - - +
988B GLU* 3.0 12.1 + - + +
989B ALA* 2.9 21.1 + - - +
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Residues in contact with ALA 986 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9A LEU* 4.9 5.8 - - - +
11A LYS* 4.9 9.8 - - - +
982B ASN* 2.9 14.7 + - - +
983B SER* 3.6 12.8 - - - +
985B VAL* 1.3 76.5 - - - +
987B GLU* 1.3 61.6 + - - +
989B ALA* 3.1 8.5 + - - +
990B GLU* 3.0 27.5 + - + +
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Residues in contact with GLU 987 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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934B ARG* 3.3 36.8 + - - +
938B ILE* 3.6 20.4 - - + +
983B SER 3.0 13.5 + - - +
984B LEU* 3.2 13.0 + - - +
986B ALA* 1.3 75.4 - - - +
988B GLU* 1.3 63.8 + - - +
990B GLU* 3.2 9.9 + - + +
991B LEU* 3.0 37.9 + - + +
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Residues in contact with GLU 988 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6A TYR* 2.8 20.1 + - - +
59A LYS* 2.5 33.2 + - - -
935B LEU* 4.3 19.3 - - + +
938B ILE* 4.1 20.8 - - + +
939B GLU* 4.3 15.4 + - - +
942B LEU* 4.5 9.6 - - - +
984B LEU 3.0 12.3 + - - +
985B VAL* 3.0 15.5 + - - +
987B GLU* 1.3 78.8 - - - +
989B ALA* 1.3 60.3 + - - +
991B LEU* 3.2 10.3 + - - +
992B MET* 2.8 32.0 + - + +
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Residues in contact with ALA 989 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6A TYR* 3.4 20.1 + - + +
9A LEU* 3.8 31.9 - - + +
985B VAL 2.9 10.9 + - - +
986B ALA* 3.1 6.9 + - - +
988B GLU* 1.3 73.3 - - - +
990B GLU* 1.3 70.1 + - - +
992B MET* 3.2 5.2 + - - +
993B ILE* 3.0 30.8 + - + +
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Residues in contact with GLU 990 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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986B ALA* 3.0 18.5 + - + +
987B GLU* 3.2 11.2 + - + +
989B ALA* 1.3 76.7 - - - +
991B LEU* 1.3 65.3 + - + +
993B ILE* 3.2 12.1 + - - +
994B THR* 3.0 27.6 + - + +
1051B GLN* 3.3 30.6 - - - +
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Residues in contact with LEU 991 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
931B ILE* 4.2 24.0 - - + +
934B ARG* 3.9 17.5 - - + -
935B LEU* 3.6 30.1 - - + -
938B ILE* 3.8 20.9 - - + -
987B GLU* 3.0 26.9 + - + +
988B GLU 3.5 4.3 - - - +
990B GLU* 1.3 77.7 - - + +
992B MET* 1.3 57.3 + - - +
994B THR* 2.7 29.7 + - + +
995B VAL* 2.9 18.1 + - - +
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Residues in contact with MET 992 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A THR* 3.4 24.7 - - + -
6A TYR* 3.0 68.2 - - + +
7A ASP 5.1 1.6 - - - +
935B LEU* 4.4 24.2 - - - -
988B GLU* 2.8 25.7 + - + +
989B ALA* 3.2 6.2 + - - +
991B LEU* 1.3 73.7 - - - +
993B ILE* 1.3 59.3 + - - +
995B VAL* 3.7 15.0 - - + +
996B GLN* 3.1 27.2 + - - +
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Residues in contact with ILE 993 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A ASP 4.2 7.4 - - - +
8A LEU* 5.0 3.8 - - + -
989B ALA* 3.0 17.3 + - + +
990B GLU* 3.5 17.7 - - - +
991B LEU 3.1 0.4 - - - -
992B MET* 1.3 76.4 - - - +
994B THR* 1.3 66.8 + - + +
995B VAL 3.1 0.4 - - - -
996B GLN* 2.9 26.0 + - - +
997B GLU* 3.0 19.4 + - - +
1047B LEU* 4.0 29.2 - - + +
1050B PHE* 4.4 26.9 - - + -
1051B GLN* 3.5 30.5 - - + +
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Residues in contact with THR 994 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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931B ILE* 3.2 24.8 - - - +
990B GLU* 3.0 20.7 + - + +
991B LEU* 2.7 23.0 + - + +
993B ILE* 1.3 75.9 - - + +
995B VAL* 1.3 57.1 + - - +
997B GLU* 3.2 18.7 + - - +
998B LEU* 2.8 33.0 + - - +
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Residues in contact with VAL 995 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A THR* 6.0 7.0 - - + -
928B ALA* 6.4 0.9 - - - -
931B ILE* 4.1 25.8 - - + -
935B LEU* 5.5 2.9 - - + -
991B LEU 2.9 14.0 + - - +
992B MET* 3.7 20.4 - - + +
994B THR* 1.3 82.1 + - - +
996B GLN* 1.3 66.0 + - + +
998B LEU* 2.9 23.1 + - + +
999B ASN* 3.0 29.1 + - - +
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Residues in contact with GLN 996 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6A TYR 5.7 0.2 - - - +
7A ASP* 2.7 60.9 + - - +
8A LEU* 5.0 0.2 - - - +
56A LYS* 4.4 7.8 + - - -
992B MET 3.1 20.2 + - - +
993B ILE* 2.9 17.8 + - - +
995B VAL* 1.3 79.0 - - + +
997B GLU* 1.3 57.4 + - - +
999B ASN* 3.3 5.4 + - - +
1000B LEU* 2.9 38.3 + - + +
1047B LEU* 3.5 30.7 - - + +
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Residues in contact with GLU 997 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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993B ILE* 3.0 19.2 + - - +
994B THR* 3.6 19.0 - - - +
996B GLN* 1.3 75.5 - - - +
998B LEU* 1.3 63.4 + - - +
1000B LEU* 3.8 7.4 - - - +
1001B GLU* 3.0 36.0 + - + +
1044B ARG* 4.8 13.7 - - - +
1047B LEU* 4.1 15.9 - - + +
1048B ILE* 3.0 33.4 - - + +
1051B GLN* 4.5 7.6 + - - -
48C ILE* 5.6 1.5 - - - +
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Residues in contact with LEU 998 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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924B ARG* 4.1 20.0 - - + +
927B LYS* 4.5 15.7 - - + -
928B ALA* 3.9 33.4 - - + +
931B ILE* 5.1 8.1 - - + -
994B THR* 2.8 15.7 + - - +
995B VAL* 2.9 20.4 + - + +
997B GLU* 1.3 77.6 - - - +
999B ASN* 1.3 66.3 + - - +
1001B GLU* 4.0 14.2 + - - +
1002B GLU* 3.8 14.4 + - - +
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Residues in contact with ASN 999 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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995B VAL* 3.0 30.2 + - - +
996B GLN* 4.1 4.4 - - - +
998B LEU* 1.3 87.9 - - - +
1000B LEU* 1.3 66.6 + - - +
1001B GLU 3.0 1.3 - - - -
1002B GLU* 3.1 18.6 + - + +
1003B LYS* 3.0 40.5 + - - +
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Residues in contact with LEU1000 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996B GLN* 2.9 23.7 + - + +
997B GLU* 3.8 4.7 - - - +
999B ASN* 1.3 76.4 - - - +
1001B GLU* 1.3 56.0 + - - +
1003B LYS* 3.4 18.4 + - + +
1004B GLN* 2.9 27.4 + - - +
1040B LEU* 3.7 32.9 - - + +
1043B GLN* 3.8 20.4 - - + +
1044B ARG* 3.5 47.6 - - + +
1047B LEU* 4.2 15.0 - - + -
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Residues in contact with GLU1001 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
997B GLU* 3.0 24.4 + - - +
998B LEU* 4.0 16.7 - - - +
999B ASN 3.0 0.2 - - - -
1000B LEU* 1.3 74.7 - - - +
1002B GLU* 1.3 67.0 + - - +
1004B GLN* 3.1 16.5 + - - +
1005B TRP* 2.9 21.9 + - - +
1044B ARG* 4.2 20.7 + - - +
47C LYS* 4.7 14.0 + - - +
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Residues in contact with GLU1002 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
998B LEU 3.8 8.7 + - - +
999B ASN* 3.1 25.7 + - - +
1001B GLU* 1.3 76.7 - - - +
1003B LYS* 1.3 78.8 + - + +
1005B TRP* 3.0 11.4 + - + +
1006B GLN* 3.0 43.0 + - + +
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Residues in contact with LYS1003 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999B ASN* 3.0 35.0 + - - +
1000B LEU* 3.6 15.0 - - + +
1002B GLU* 1.3 92.6 - - + +
1004B GLN* 1.3 62.7 + - - +
1005B TRP 3.1 0.3 + - - -
1006B GLN* 3.1 9.6 + - + -
1007B LEU* 2.9 36.6 + - + +
1040B LEU* 3.3 29.6 - - + -
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Residues in contact with GLN1004 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000B LEU 2.9 13.9 + - - +
1001B GLU* 3.1 16.8 + - - +
1003B LYS* 1.3 75.2 - - - +
1005B TRP* 1.3 57.2 + - - +
1007B LEU* 4.2 3.8 - - - +
1008B ASP* 2.9 31.1 + - - +
1037B LEU* 4.7 18.8 - - + +
1040B LEU* 4.1 10.2 - - + +
1041B VAL* 3.2 28.6 - - + +
1044B ARG* 2.9 33.6 + - - +
44C ILE 4.4 0.9 - - - +
45C ASP* 3.5 22.8 + - - +
47C LYS* 4.8 4.9 - - - +
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Residues in contact with TRP1005 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1001B GLU 2.9 11.4 + - - +
1002B GLU* 3.0 12.3 + - + +
1004B GLN* 1.3 73.9 - - - +
1006B GLN* 1.3 91.9 + - - +
1008B ASP* 3.1 12.4 + - + +
1009B GLN* 2.7 67.6 + - + +
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Residues in contact with GLN1006 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002B GLU* 3.0 41.3 + - + +
1003B LYS* 3.1 10.3 + - + +
1005B TRP* 1.3 93.4 + - - +
1007B LEU* 1.3 69.3 + - + +
1009B GLN* 3.1 8.3 + - - +
1010B GLU* 3.0 33.7 + - + +
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Residues in contact with LEU1007 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003B LYS* 2.9 41.5 + - + +
1004B GLN* 4.2 2.7 - - - +
1006B GLN* 1.3 80.0 - - + +
1008B ASP* 1.3 65.3 + - - +
1010B GLU* 3.8 15.9 - - - +
1011B LEU* 3.0 25.5 + - - +
1033B VAL* 3.6 29.5 - - + +
1036B LYS* 4.7 9.4 - - + -
1037B LEU* 4.1 34.0 - - + +
1040B LEU* 4.3 11.4 - - + -
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Residues in contact with ASP1008 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004B GLN* 2.9 17.6 + - - +
1005B TRP* 3.2 18.0 - - + +
1007B LEU* 1.3 77.9 - - - +
1009B GLN* 1.3 69.5 + - - +
1011B LEU* 3.1 2.8 + - - +
1012B ARG* 2.7 69.0 + - - +
1037B LEU* 4.0 13.8 - - + +
42C ILE* 3.3 9.9 + - - +
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Residues in contact with GLN1009 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1005B TRP* 2.7 80.9 + - + +
1006B GLN* 3.4 9.6 - - - +
1008B ASP* 1.3 79.0 + - - +
1010B GLU* 1.3 66.2 + - + +
1012B ARG* 2.8 26.7 + - + +
1013B GLY* 3.0 11.6 + - - -
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Residues in contact with GLU1010 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006B GLN* 3.0 22.7 + - + +
1007B LEU* 3.8 23.4 - - - +
1009B GLN* 1.3 75.4 - - + +
1011B LEU* 1.3 63.9 + - - +
1013B GLY* 3.3 2.8 + - - +
1014B TYR* 3.1 37.5 + - + -
1033B VAL* 3.9 13.7 - - + +
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Residues in contact with LEU1011 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007B LEU 3.0 18.7 + - - +
1008B ASP* 3.5 4.3 - - - +
1010B GLU* 1.3 75.8 - - - +
1012B ARG* 1.3 63.8 + - - +
1014B TYR* 3.2 21.4 + - + +
1030B GLU* 4.0 23.1 - - + +
1033B VAL* 3.8 26.9 - - + +
1034B LEU* 3.9 26.7 - - + +
1037B LEU* 5.0 3.1 - - + -
42C ILE* 3.9 37.9 - - + -
70C ARG* 6.4 0.4 - - - +
71C PHE* 5.5 4.7 - - + -
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Residues in contact with ARG1012 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1008B ASP* 2.7 46.3 + - - +
1009B GLN* 2.8 24.8 + - + +
1011B LEU* 1.3 70.9 - - - +
1013B GLY* 1.3 64.9 + - - +
1014B TYR 2.8 10.6 - - - +
39C ILE* 3.2 26.3 + - - +
40C SER* 2.3 43.4 + - - +
41C THR* 4.7 2.6 - - - +
42C ILE* 3.3 21.4 - - - +
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Residues in contact with GLY1013 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1009B GLN 3.0 12.6 + - - -
1010B GLU* 3.3 4.2 + - - -
1012B ARG* 1.3 75.3 - - - +
1014B TYR* 1.3 63.5 + - - +
----------------------------------------------------------
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Residues in contact with TYR1014 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010B GLU* 3.1 30.9 + - + +
1011B LEU* 3.2 17.1 - - - +
1012B ARG 2.8 16.0 - - - +
1013B GLY* 1.3 77.5 - - - +
1026B ASP 4.9 5.8 - - - -
1029B ALA* 4.5 13.3 - - + +
1030B GLU* 3.1 62.6 - - + +
1033B VAL* 4.6 10.0 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il