Contacts of the helix formed by residues 104 - 150 (chain G) in PDB entry 5LSJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 104 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G PHE* 1.3 76.8 - - - +
105G ASP* 1.3 91.9 + - - +
106G SER* 3.4 20.8 + - - +
107G ASP* 3.7 25.5 + - - +
108G ILE* 3.7 12.0 + - - +
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Residues in contact with ASP 105 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G PHE 3.6 2.7 + - - -
104G MET* 1.3 95.2 - - - +
106G SER* 1.3 81.7 + - - +
107G ASP 3.2 0.9 - - - -
108G ILE* 3.0 10.9 + - + +
109G LYS* 2.9 30.6 + - + +
11Q ASN 5.7 4.5 - - - +
12Q GLY* 5.7 8.1 - - - -
14Q ARG* 4.3 18.4 + - + +
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Residues in contact with SER 106 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104G MET* 3.4 15.0 - - - +
105G ASP* 1.3 87.7 + - - +
107G ASP* 1.3 66.9 + - - +
109G LYS* 3.7 4.6 + - - +
110G VAL* 3.5 24.4 + - - +
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Residues in contact with ASP 107 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G PHE* 6.0 3.8 - - + -
104G MET* 3.7 22.9 + - - +
105G ASP 3.2 0.2 - - - -
106G SER* 1.3 80.9 - - - +
108G ILE* 1.3 62.5 + - + +
110G VAL* 3.3 7.4 + - - +
111G LEU* 2.9 29.6 + - - +
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Residues in contact with ILE 108 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204F LEU* 4.0 23.1 - - + -
208F VAL* 4.5 11.0 - - + -
103G PHE* 4.2 18.6 - - + +
104G MET 3.8 13.5 - - - +
105G ASP* 3.0 12.1 + - + +
107G ASP* 1.3 78.7 - - + +
109G LYS* 1.3 61.8 + - - +
111G LEU* 4.0 7.7 - - + +
112G GLU* 2.9 41.9 + - + +
14Q ARG* 3.3 49.6 - - + +
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Residues in contact with LYS 109 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22C LEU* 3.7 16.4 - - + -
105G ASP* 2.9 19.1 + - + +
106G SER* 4.1 6.3 - - - +
107G ASP 3.3 0.2 - - - -
108G ILE* 1.3 80.2 - - - +
110G VAL* 1.3 61.5 + - + +
112G GLU* 3.1 24.0 + - - -
113G ASP* 2.9 37.7 + - - +
12Q GLY* 3.2 40.9 + - - -
13Q TYR 3.9 6.1 + - - -
14Q ARG* 3.9 8.7 - - - +
15Q ARG* 3.8 13.6 + - - +
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Residues in contact with VAL 110 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106G SER 3.5 15.0 + - - +
107G ASP* 3.3 9.5 + - - +
109G LYS* 1.3 79.0 - - + +
111G LEU* 1.3 57.3 + - - +
113G ASP* 3.2 5.1 + - - +
114G GLN* 2.9 33.0 + - + +
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Residues in contact with LEU 111 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208F VAL* 3.7 31.4 - - + +
211F MET* 4.3 20.6 - - + -
212F LYS* 3.7 38.6 - - + +
215F ILE* 5.5 6.3 - - + -
107G ASP 2.9 17.6 + - - +
108G ILE* 4.0 8.3 - - + +
110G VAL* 1.3 78.9 - - - +
112G GLU* 1.3 56.8 + - - +
114G GLN* 3.9 17.2 - - - +
115G PHE* 2.9 31.1 + - + +
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Residues in contact with GLU 112 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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211F MET* 3.9 14.8 - - + +
108G ILE* 2.9 26.1 + - + +
109G LYS* 3.1 20.5 + - - -
111G LEU* 1.3 75.5 - - + +
113G ASP* 1.3 59.8 + - - +
115G PHE* 3.7 5.9 - - - +
116G ASP* 2.9 29.3 + - - +
14Q ARG* 3.8 5.4 - - - +
15Q ARG* 2.8 52.6 + - - +
16Q ARG* 3.0 40.9 + - - +
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Residues in contact with ASP 113 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C ARG* 4.7 7.9 + - - -
109G LYS* 2.9 22.9 + - - +
110G VAL* 3.5 7.2 - - + +
112G GLU* 1.3 74.1 - - - +
114G GLN* 1.3 66.0 + - - +
116G ASP* 3.2 7.0 + - - +
117G GLU* 2.9 21.5 + - - +
15Q ARG* 2.8 26.3 + - - -
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Residues in contact with GLN 114 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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212F LYS* 4.9 5.2 + - - +
215F ILE* 4.0 23.6 - - + +
110G VAL* 2.9 18.9 + - + +
111G LEU* 4.1 19.5 - - - +
113G ASP* 1.3 75.2 - - - +
115G PHE* 1.3 56.4 + - - +
117G GLU* 3.2 11.1 + - + +
118G ILE* 2.9 29.0 + - + +
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Residues in contact with PHE 115 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3C VAL* 5.3 3.8 - - + -
5C PRO* 4.2 7.9 - - + -
211F MET* 3.6 36.3 - - + -
214F TYR* 3.5 40.6 - + + -
215F ILE* 3.8 20.2 - - + +
218F PHE* 4.8 0.2 - + - -
111G LEU* 2.9 20.9 + - + +
112G GLU* 3.7 7.0 - - - +
114G GLN* 1.3 76.9 - - - +
116G ASP* 1.3 63.0 + - - +
118G ILE* 3.1 8.4 - - + +
119G ILE* 2.9 51.5 + - + +
16Q ARG* 3.5 41.1 - - - -
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Residues in contact with ASP 116 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15C PHE 3.3 6.9 - - - +
16C THR* 2.8 20.8 + - - +
19C THR* 2.5 33.3 + - - +
112G GLU 2.9 19.1 + - - +
113G ASP* 3.2 4.9 + - - +
115G PHE* 1.3 76.1 - - - +
117G GLU* 1.3 65.3 + - - +
119G ILE* 3.1 6.6 + - - +
120G VAL* 3.0 32.9 + - - +
15Q ARG* 4.3 5.4 - - - +
16Q ARG* 3.8 13.2 + - - +
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Residues in contact with GLU 117 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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222F ARG* 4.5 8.7 + - - +
113G ASP 2.9 12.3 + - - +
114G GLN* 3.3 16.2 - - + +
116G ASP* 1.3 78.0 + - - +
118G ILE* 1.3 59.3 + - + +
120G VAL* 3.2 13.2 - - - +
121G ASP* 2.9 47.6 + - - +
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Residues in contact with ILE 118 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215F ILE* 3.5 34.3 - - + +
218F PHE* 4.0 17.9 - - + +
219F SER* 3.2 39.3 - - - +
222F ARG* 3.7 28.5 - - - +
114G GLN* 2.9 11.3 + - + +
115G PHE* 3.1 20.2 - - + +
117G GLU* 1.3 75.9 - - + +
119G ILE* 1.3 70.5 + - + +
121G ASP* 4.1 4.3 - - - -
122G ILE* 2.9 31.8 + - + +
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Residues in contact with ILE 119 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5C PRO* 4.0 19.3 - - + +
7C THR* 4.5 11.4 - - - -
10C ALA* 4.5 6.3 - - + -
16C THR* 3.5 26.0 - - + -
218F PHE* 3.5 38.4 - - + -
115G PHE* 2.9 47.7 + - + +
116G ASP* 3.1 9.2 + - - +
118G ILE* 1.3 77.0 - - + +
120G VAL* 1.3 61.1 + - - +
122G ILE* 3.2 6.7 - - + +
123G ALA* 2.9 30.0 + - - +
16Q ARG* 5.6 1.8 - - - +
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Residues in contact with VAL 120 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10C ALA* 4.7 1.8 - - + -
14C GLY* 3.6 27.6 - - - +
15C PHE* 3.8 23.8 - - - +
16C THR* 3.9 8.7 - - + -
116G ASP* 3.0 20.9 + - - +
117G GLU* 3.2 26.9 - - - +
119G ILE* 1.3 76.7 - - - +
121G ASP* 1.3 52.9 + - - +
123G ALA* 3.8 6.1 - - - +
124G THR* 2.6 39.1 + - - +
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Residues in contact with ASP 121 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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222F ARG* 3.2 44.1 + - - +
117G GLU* 2.9 31.4 + - - +
118G ILE 3.9 3.1 - - - +
120G VAL* 1.3 75.6 - - - +
122G ILE* 1.3 61.7 + - - +
124G THR* 3.1 8.2 + - - -
125G LYS* 2.9 43.0 + - - +
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Residues in contact with ILE 122 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7C THR* 4.8 7.9 - - - +
218F PHE* 4.0 30.3 - - + +
221F GLU* 3.8 12.1 - - + +
222F ARG* 3.4 40.3 - - + +
225F TRP* 3.7 19.3 - - + -
118G ILE* 2.9 23.6 + - + +
119G ILE* 3.2 13.0 - - + +
121G ASP* 1.3 76.1 + - - +
123G ALA* 1.3 61.5 + - - +
125G LYS* 3.5 5.1 + - + +
126G ARG* 2.9 50.9 + - - +
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Residues in contact with ALA 123 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7C THR* 4.1 7.9 - - - +
10C ALA* 3.6 11.2 - - + -
11C GLN* 3.3 45.5 - - + +
119G ILE 2.9 18.4 + - - +
120G VAL 3.8 3.8 - - - +
122G ILE* 1.3 76.6 - - + +
124G THR* 1.3 66.0 + - - +
126G ARG* 3.3 10.2 + - - +
127G LYS* 3.0 19.2 + - - +
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Residues in contact with THR 124 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11C GLN* 4.8 2.0 - - - +
14C GLY* 6.0 1.6 - - - -
120G VAL* 2.6 24.7 + - - +
121G ASP* 3.1 7.9 + - - -
123G ALA* 1.3 75.3 - - - +
125G LYS* 1.3 64.4 + - + +
127G LYS* 3.2 5.6 + - + +
128G GLN* 3.0 47.2 + - + +
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Residues in contact with LYS 125 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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222F ARG* 3.3 19.6 - - + +
225F TRP* 4.1 24.9 - - + -
226F ASP* 2.8 33.2 + - - +
121G ASP* 2.9 33.9 + - - +
122G ILE* 3.6 13.7 - - + +
123G ALA 3.3 0.2 - - - -
124G THR* 1.3 76.4 - - + +
126G ARG* 1.3 63.9 + - - +
127G LYS 2.9 1.4 + - - -
129G TYR* 3.0 68.2 + - + +
130G PRO* 3.5 0.9 - - - +
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Residues in contact with ARG 126 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7C THR* 2.7 39.7 + - - +
8C TYR* 4.9 0.4 - - - +
11C GLN* 4.0 16.9 + - - +
102C ASP* 5.2 2.4 - - - +
105C LYS* 4.6 6.8 + - - -
125E PRO* 3.2 49.5 + - + +
127E GLY* 4.5 4.8 - - - -
218F PHE* 3.8 16.6 - - - -
221F GLU* 3.3 36.3 + - - +
225F TRP* 3.8 21.4 - - + +
122G ILE* 2.9 35.4 + - - +
123G ALA* 3.5 9.9 - - - +
125G LYS* 1.3 71.8 - - - +
127G LYS* 1.3 64.0 + - - +
130G PRO* 3.5 14.3 - - - +
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Residues in contact with LYS 127 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11C GLN* 3.2 34.3 + - + +
12C PHE* 5.2 4.6 + - - -
101C GLU* 3.1 42.1 + - + +
105C LYS* 5.3 1.7 + - - -
123G ALA 3.0 15.5 + - - +
124G THR* 3.6 6.3 - - + +
125G LYS 2.9 1.6 + - - -
126G ARG* 1.3 81.5 - - - +
128G GLN* 1.3 69.2 + - + +
129G TYR 3.5 0.4 - - - -
130G PRO* 3.4 11.1 - - - +
131G ARG* 4.2 17.9 - - - +
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Residues in contact with GLN 128 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124G THR* 3.0 33.6 + - + +
127G LYS* 1.3 81.9 - - + +
129G TYR* 1.3 73.1 + - + +
130G PRO 3.6 0.2 - - - -
131G ARG* 3.6 26.5 + - - +
132G LYS* 3.1 43.9 + - + +
135N GLU* 3.1 29.0 + - - +
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Residues in contact with TYR 129 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225F TRP* 3.5 44.9 - + + -
226F ASP* 2.7 28.8 + - - -
229F LEU* 3.6 30.5 - - + +
125G LYS* 3.0 49.8 + - + +
128G GLN* 1.3 80.5 - - + +
130G PRO* 1.3 66.7 - - + +
131G ARG 3.0 2.9 + - - -
132G LYS* 3.1 24.0 + - - +
133G ILE* 3.0 29.6 + - + +
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Residues in contact with PRO 130 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105C LYS* 3.7 25.6 - - - +
132E ASP* 6.4 0.2 - - + -
133E LEU* 3.8 25.6 - - + +
136E VAL* 4.2 11.6 - - + +
137E MET* 5.9 0.2 - - - +
225F TRP* 3.5 22.0 - - + -
125G LYS 3.5 0.2 - - - +
126G ARG 3.5 17.0 - - - +
127G LYS 3.4 14.8 - - - +
129G TYR* 1.3 94.3 - - + +
131G ARG* 1.3 56.7 + - + +
133G ILE* 4.1 1.1 - - + +
134G LEU* 2.9 31.2 + - - +
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Residues in contact with ARG 131 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101C GLU* 5.5 10.1 - - - +
136E VAL* 6.2 0.2 - - - -
127G LYS* 4.2 22.9 - - - +
128G GLN* 3.6 25.2 + - - +
129G TYR 3.0 1.2 + - - -
130G PRO* 1.3 77.0 - - + +
132G LYS* 1.3 63.6 + - + +
134G LEU* 3.3 13.4 - - + +
135G GLU* 2.9 25.9 + - - +
128N GLN* 5.4 1.2 - - - +
131N ARG* 3.3 27.9 - - - +
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Residues in contact with LYS 132 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229F LEU* 3.8 21.8 - - + -
233F GLN* 5.5 6.5 - - - +
128G GLN* 3.1 41.5 + - + +
129G TYR* 3.1 29.0 + - - +
131G ARG* 1.3 78.9 - - + +
133G ILE* 1.3 65.6 + - - +
135G GLU* 3.0 17.3 + - - +
136G CYS* 3.0 25.0 + - - +
132N LYS* 5.1 12.3 - - - +
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Residues in contact with ILE 133 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133E LEU* 3.9 33.0 - - + -
137E MET* 4.6 2.2 - - - -
225F TRP* 4.8 4.5 - - + -
228F LEU* 4.4 3.6 - - + -
229F LEU* 3.7 47.1 - - + +
232F TYR* 3.5 32.3 - - + -
233F GLN* 6.3 0.2 - - - -
129G TYR* 3.0 31.6 + - + +
130G PRO* 4.1 4.0 - - + +
132G LYS* 1.3 75.8 - - - +
134G LEU* 1.3 63.8 + - - +
136G CYS* 3.0 11.1 + - - +
137G VAL* 2.9 23.8 + - + +
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Residues in contact with LEU 134 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136E VAL* 3.9 33.7 - - + +
137E MET* 4.0 18.1 - - + +
140E TYR* 3.4 45.8 - - + +
130G PRO 2.9 20.0 + - - +
131G ARG* 3.3 12.8 - - + +
133G ILE* 1.3 76.9 - - - +
135G GLU* 1.3 63.4 + - - +
137G VAL* 3.1 9.5 - - + +
138G ILE* 2.9 30.0 + - + +
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Residues in contact with GLU 135 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131G ARG 2.9 12.9 + - - +
132G LYS* 3.0 17.7 + - - +
134G LEU* 1.3 73.7 - - - +
136G CYS* 1.3 66.1 + - - +
138G ILE* 3.3 10.0 + - + +
139G LYS* 3.1 31.0 + - + +
128N GLN* 4.9 11.4 + - - -
132N LYS* 4.5 18.5 + - - -
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Residues in contact with CYS 136 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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232F TYR* 3.7 18.8 - - + +
233F GLN* 3.6 41.3 - - - -
236F ALA* 3.7 9.3 - - + +
132G LYS 3.0 14.2 + - - +
133G ILE* 3.0 12.7 + - - +
135G GLU* 1.3 77.5 - - - +
137G VAL* 1.3 58.5 + - - +
139G LYS* 3.0 11.3 + - - +
140G THR* 2.9 29.6 + - - +
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Residues in contact with VAL 137 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137E MET* 3.9 23.1 - - + -
140E TYR* 5.2 3.6 - - + -
141E PHE* 4.7 18.6 - - + -
232F TYR* 3.4 32.3 - - + -
235F GLU* 5.0 1.3 - - - +
133G ILE 2.9 13.0 + - - +
134G LEU* 3.1 33.0 - - + +
136G CYS* 1.3 75.8 - - - +
138G ILE* 1.3 62.2 + - + +
140G THR* 2.6 27.3 + - - +
141G ILE* 2.9 20.8 + - + +
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Residues in contact with ILE 138 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140E TYR* 3.5 52.9 - - + -
143E GLN* 5.4 1.6 - - - +
134G LEU* 2.9 22.3 + - + +
135G GLU* 3.5 12.1 - - + +
136G CYS 3.2 0.2 - - - -
137G VAL* 1.3 79.5 - - + +
139G LYS* 1.3 62.8 + - + +
141G ILE* 3.5 14.2 - - + +
142G LYS* 3.5 18.7 + - - +
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Residues in contact with LYS 139 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236F ALA* 4.4 14.6 - - + +
240F LEU* 3.7 32.6 - - + +
135G GLU* 3.1 19.1 + - + +
136G CYS* 3.0 12.6 + - - +
138G ILE* 1.3 80.5 - - + +
140G THR* 1.3 62.9 + - - +
142G LYS* 3.4 5.4 + - - +
143G ALA* 3.0 23.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 140 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141E PHE* 5.6 0.5 - - - -
232F TYR 4.7 0.2 - - - +
235F GLU* 3.4 30.7 + - + +
236F ALA* 3.5 27.1 - - + +
239F ILE* 4.4 7.1 - - + +
136G CYS 2.9 15.6 + - - +
137G VAL* 2.6 27.0 + - - +
139G LYS* 1.3 75.8 - - - +
141G ILE* 1.3 65.3 + - - +
143G ALA* 3.1 7.8 + - - +
144G LYS* 2.8 42.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 141 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140E TYR* 4.1 21.1 - - + +
141E PHE* 3.9 20.4 - - + -
143E GLN* 4.4 16.4 - - + +
144E GLN* 3.7 41.2 + - + +
137G VAL* 2.9 18.6 + - + +
138G ILE* 3.5 23.1 - - + +
140G THR* 1.3 85.1 + - - +
142G LYS* 1.3 61.7 + - + +
144G LYS* 3.9 8.3 - - - +
145G GLN* 3.0 29.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 142 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138G ILE 3.5 12.8 + - - +
139G LYS* 3.4 5.5 + - - +
140G THR 3.2 0.4 - - - -
141G ILE* 1.3 80.5 - - + +
143G ALA* 1.3 66.9 + - - +
145G GLN* 3.3 5.9 + - - +
146G GLU* 2.9 30.4 + - + +
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Residues in contact with ALA 143 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239F ILE* 3.7 32.3 - - + +
240F LEU* 4.4 14.4 - - + +
139G LYS 3.0 18.2 + - - +
140G THR* 3.6 4.7 - - - +
142G LYS* 1.3 78.2 - - - +
144G LYS* 1.3 57.7 + - - +
146G GLU* 3.4 4.0 + - - +
147G ILE* 2.9 38.5 + - + +
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Residues in contact with LYS 144 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121C ILE* 5.7 3.0 - - - +
125C GLN* 4.3 27.9 + - - +
141E PHE* 6.1 2.0 - - - -
144E GLN* 4.2 21.2 + - - +
235F GLU* 5.5 7.2 + - - -
239F ILE* 4.1 22.4 - - + -
242F ARG* 5.4 3.4 - - - +
140G THR* 2.8 31.2 + - - +
141G ILE* 3.9 8.5 - - - +
143G ALA* 1.3 77.3 - - - +
145G GLN* 1.3 57.2 + - - +
147G ILE* 3.2 15.2 - - + +
148G LEU* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 145 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C GLN* 5.8 1.1 - - - +
144E GLN* 5.6 5.5 - - + +
147E THR* 4.0 14.7 - - + +
148E LEU* 4.4 19.3 - - + -
151E HIS* 3.0 37.0 + - - -
141G ILE 3.0 18.5 + - - +
142G LYS* 3.3 6.2 + - - +
144G LYS* 1.3 76.7 - - - +
146G GLU* 1.3 61.7 + - - +
148G LEU* 3.2 8.6 + - + +
149G LYS* 3.0 47.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 146 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142G LYS* 2.9 25.9 + - + +
143G ALA* 3.9 4.5 - - - +
145G GLN* 1.3 82.3 + - - +
147G ILE* 1.3 64.6 + - - +
149G LYS* 3.1 9.1 + - + +
150G GLN* 2.9 38.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 147 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C GLN* 6.2 0.9 - - - +
239F ILE* 5.1 8.1 - - + +
242F ARG* 4.5 21.1 - - - +
243F GLY* 4.3 25.6 - - - +
143G ALA* 2.9 23.6 + - + +
144G LYS* 3.2 22.7 - - + +
146G GLU* 1.3 83.3 - - + +
148G LEU* 1.3 67.9 + - + +
150G GLN* 3.6 19.1 + - - +
151G TYR* 3.6 10.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 148 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C GLN* 4.2 31.2 - - + +
128C TYR* 3.5 45.1 - - + -
129C LYS* 5.1 14.4 - - + -
148E LEU* 3.6 29.8 - - + -
151E HIS* 5.5 1.8 - - + -
144G LYS 2.9 15.2 + - - +
145G GLN* 3.3 13.0 - - + +
146G GLU 3.1 0.2 - - - -
147G ILE* 1.3 82.3 - - + +
149G LYS* 1.3 62.6 + - + +
151G TYR* 3.0 29.0 + - + +
152G HIS 3.8 1.9 + - - -
----------------------------------------------------------
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Residues in contact with LYS 149 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C TYR* 4.0 24.0 - - - +
151E HIS* 4.3 20.2 + - + +
145G GLN* 3.0 45.7 + - + +
146G GLU* 3.1 10.1 + - + +
148G LEU* 1.3 78.8 - - + +
150G GLN* 1.3 57.5 + - - +
152G HIS* 3.1 32.0 - - - +
153G PRO* 4.3 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 150 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243F GLY* 4.6 13.5 + - - +
146G GLU* 2.9 28.9 + - - +
147G ILE* 3.8 15.8 - - - +
148G LEU 3.2 0.6 - - - -
149G LYS* 1.3 75.7 - - - +
151G TYR* 1.3 57.7 + - - +
152G HIS 3.2 0.2 - - - -
153G PRO* 3.1 19.7 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il