Contacts of the helix formed by residues 110 - 168 (chain C) in PDB entry 5LSJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 110 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108C PRO* 3.5 5.7 + - - -
109C TYR* 1.3 72.3 - - - +
111C GLU* 1.3 55.2 + - - +
112C GLU* 4.2 7.0 - - - -
113C ASP* 2.7 49.4 + - - +
114C PHE* 2.7 15.4 + - - +
131E LYS* 5.9 2.0 - - - +
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Residues in contact with GLU 111 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C TYR 3.4 8.4 - - - +
110C SER* 1.3 72.1 - - - +
112C GLU* 1.3 58.8 + - + +
114C PHE* 3.6 5.4 - - - +
115C GLN* 2.9 33.2 + - - +
130E GLU* 6.2 0.2 - - + -
131E LYS* 3.3 37.6 + - + +
134E HIS* 2.5 50.2 + - + +
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Residues in contact with GLU 112 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110C SER* 3.0 7.1 - - - -
111C GLU* 1.3 77.2 - - + +
113C ASP* 1.3 60.7 + - - +
115C GLN* 3.5 17.8 - - - +
116C HIS* 2.9 31.4 + - - +
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Residues in contact with ASP 113 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C TYR* 3.6 29.5 - - + +
110C SER* 2.7 35.8 + - - +
112C GLU* 1.3 75.5 - - - +
114C PHE* 1.3 55.5 + - - +
116C HIS* 3.4 10.7 + - - +
117C LEU* 2.9 29.5 + - - +
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Residues in contact with PHE 114 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C TYR* 3.8 19.5 - + + +
110C SER 2.7 17.9 + - - +
111C GLU* 3.7 10.1 - - - +
112C GLU 3.2 0.4 - - - -
113C ASP* 1.3 70.8 - - - +
115C GLN* 1.3 62.3 + - + +
117C LEU* 3.1 8.9 + - + +
118C GLN* 2.9 53.3 + - - +
134E HIS* 3.3 70.7 - + + -
137E MET* 4.0 6.3 - - + -
138E ALA* 4.4 9.9 - - - -
141E PHE* 3.5 39.5 - + + -
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Residues in contact with GLN 115 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111C GLU 2.9 21.4 + - - +
112C GLU* 3.5 18.8 - - - +
114C PHE* 1.3 76.7 - - + +
116C HIS* 1.3 69.0 + - - +
118C GLN* 3.2 13.8 + - - +
119C LYS* 2.9 27.7 + - - +
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Residues in contact with HIS 116 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C GLU 2.9 21.2 + - - +
113C ASP* 3.4 12.5 + - - +
115C GLN* 1.3 79.8 - - - +
117C LEU* 1.3 57.8 + - - +
119C LYS* 3.9 4.9 - - - +
120C GLU* 3.0 47.5 + - + +
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Residues in contact with LEU 117 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C TYR* 4.5 10.5 - - + +
113C ASP 2.9 18.1 + - - +
114C PHE* 3.1 10.5 + - + +
116C HIS* 1.3 75.6 + - - +
118C GLN* 1.3 61.8 + - - +
120C GLU* 3.4 11.0 + - - +
121C ILE* 2.9 40.2 + - + +
138E ALA* 5.2 1.1 - - - +
141E PHE* 3.4 35.9 - - + +
142E LEU* 3.6 39.5 - - + -
145E ARG* 3.7 22.4 - - - +
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Residues in contact with GLN 118 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114C PHE* 2.9 50.2 + - + +
115C GLN* 3.2 14.3 + - - +
117C LEU* 1.3 78.1 - - + +
119C LYS* 1.3 64.0 + - - +
121C ILE* 3.0 10.5 + - + +
122C GLU* 3.0 22.2 + - - +
137E MET* 6.0 0.2 - - - +
141E PHE* 3.9 19.7 - - + -
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Residues in contact with LYS 119 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115C GLN 2.9 15.7 + - - +
116C HIS* 3.9 4.7 - - - +
118C GLN* 1.3 76.4 - - - +
120C GLU* 1.3 64.2 + - - +
122C GLU* 3.2 30.5 + - - +
123C GLN* 2.9 36.5 + - + +
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Residues in contact with GLU 120 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116C HIS* 3.0 41.1 + - + +
117C LEU* 3.5 10.2 - - - +
119C LYS* 1.3 76.7 - - - +
121C ILE* 1.3 56.9 + - - +
123C GLN* 3.4 16.8 - - - +
124C LEU* 2.9 41.6 + - + +
145E ARG* 3.5 20.1 + - - -
149E ARG* 2.2 44.0 + - - +
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Residues in contact with ILE 121 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117C LEU* 2.9 30.8 + - + +
118C GLN* 3.0 11.0 + - + +
120C GLU* 1.3 76.8 - - - +
122C GLU* 1.3 64.3 + - - +
124C LEU* 3.2 7.9 + - - +
125C GLN* 2.9 31.7 + - - +
141E PHE* 3.3 30.3 - - + +
144E GLN* 3.4 27.8 - - - +
145E ARG* 4.0 22.7 - - + +
148E LEU* 4.0 18.9 - - + +
144G LYS* 5.7 3.8 - - - +
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Residues in contact with GLU 122 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118C GLN 3.0 12.0 + - - +
119C LYS* 3.2 41.1 + - - +
121C ILE* 1.3 76.5 - - - +
123C GLN* 1.3 57.1 + - - +
125C GLN* 3.1 19.5 + - - +
126C GLU* 3.0 30.5 + - - +
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Residues in contact with GLN 123 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119C LYS* 2.9 23.0 + - + +
120C GLU* 3.4 23.3 - - - +
122C GLU* 1.3 76.3 + - - +
124C LEU* 1.3 66.6 + - + +
126C GLU* 3.4 9.0 + - - +
127C LYS* 2.9 26.9 + - - +
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Residues in contact with LEU 124 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120C GLU* 2.9 35.0 + - + +
121C ILE* 3.7 5.8 - - - +
123C GLN* 1.3 81.5 - - + +
125C GLN* 1.3 58.6 + - - +
127C LYS* 4.0 24.9 - - + +
128C TYR* 2.9 29.6 + - - +
145E ARG* 4.3 18.6 - - + +
148E LEU* 4.8 10.7 - - + +
149E ARG* 3.5 42.8 - - + +
152E VAL* 3.5 20.8 - - + +
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Residues in contact with GLN 125 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121C ILE* 2.9 21.0 + - - +
122C GLU* 3.3 23.9 - - - +
124C LEU* 1.3 77.7 - - - +
126C GLU* 1.3 64.3 + - - +
128C TYR* 3.4 6.7 + - - +
129C LYS* 3.0 25.7 + - - +
144E GLN* 4.7 4.6 - - - +
148E LEU* 3.7 26.7 - - + +
144G LYS* 4.3 38.2 + - - +
145G GLN* 5.8 0.6 - - - +
147G ILE* 6.2 0.8 - - - +
148G LEU* 4.2 23.0 - - + +
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Residues in contact with GLU 126 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122C GLU* 3.0 16.8 + - - +
123C GLN* 3.7 11.4 - - - +
125C GLN* 1.3 77.1 - - - +
127C LYS* 1.3 58.3 + - - +
129C LYS* 2.4 35.9 + - + +
130C THR* 2.9 39.2 + - + +
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Residues in contact with LYS 127 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123C GLN 2.9 17.9 + - - +
124C LEU* 3.6 21.4 - - + +
125C GLN 3.3 0.2 - - - -
126C GLU* 1.3 74.5 - - - +
128C TYR* 1.3 65.4 + - - +
130C THR* 3.0 11.1 + - - +
131C GLU* 2.9 34.9 + - + +
152E VAL* 3.7 16.7 - - + +
153E GLN* 5.8 3.6 - - - +
156E GLU* 3.4 36.0 + - - -
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Residues in contact with TYR 128 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124C LEU 2.9 17.8 + - - +
125C GLN* 3.6 5.2 - - - +
127C LYS* 1.3 74.7 - - - +
129C LYS* 1.3 64.8 + - - +
131C GLU* 3.2 4.8 + - - -
132C LEU* 3.0 70.5 + - + +
148E LEU* 5.1 1.6 - - + -
151E HIS* 3.8 36.6 - + + -
152E VAL* 3.5 21.1 - - + +
155E GLN* 4.8 3.8 - - + -
148G LEU* 3.5 51.6 - - + -
149G LYS* 4.0 22.8 - - - -
151G TYR* 5.8 2.5 - + - -
152G HIS* 3.7 11.8 + - - -
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Residues in contact with LYS 129 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C GLN* 3.0 16.5 + - - +
126C GLU* 2.4 50.3 + - - +
128C TYR* 1.3 83.6 - - + +
130C THR* 1.3 59.4 - - + +
132C LEU* 4.0 1.4 + - - +
133C CYS* 3.3 21.0 + - - +
148G LEU* 5.1 9.9 - - + -
151G TYR* 3.4 45.5 - - + +
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Residues in contact with THR 130 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C GLU* 2.9 20.8 + - + +
127C LYS* 3.0 15.9 + - - +
129C LYS* 1.3 78.4 - - + +
131C GLU* 1.3 70.7 + - - +
133C CYS* 3.1 13.0 - - - -
134C THR* 2.9 28.3 + - - +
260F LEU* 4.9 7.4 - - - +
261F GLY* 4.7 19.2 - - - +
262F SER* 4.2 12.2 + - - -
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Residues in contact with GLU 131 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127C LYS* 2.9 34.1 + - + +
128C TYR* 3.8 5.8 - - - +
130C THR* 1.3 79.1 + - - +
132C LEU* 1.3 58.1 + - - +
134C THR* 3.0 2.4 + - - -
135C LYS* 2.9 10.9 + - - +
152E VAL* 4.5 11.9 - - + +
155E GLN* 4.6 16.2 - - + -
156E GLU* 3.6 20.6 - - + +
159E ASN* 2.6 39.0 + - - +
262F SER* 3.2 10.9 - - - -
263F SER* 2.7 46.9 + - - -
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Residues in contact with LEU 132 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C TYR* 3.0 70.5 + - + +
129C LYS* 4.4 4.5 - - - +
130C THR 3.2 0.2 - - - -
131C GLU* 1.3 77.3 - - + +
133C CYS* 1.3 57.5 + - - +
135C LYS* 3.1 15.6 + - + +
136C GLN* 3.0 24.1 + - - +
155E GLN* 3.6 26.2 - - + -
151G TYR* 5.0 4.5 - - + +
152G HIS* 3.5 53.2 - - + +
154G VAL* 4.5 11.6 - - + +
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Residues in contact with CYS 133 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129C LYS 3.3 16.2 + - - +
130C THR* 3.1 26.9 - - - -
132C LEU* 1.3 78.3 - - - +
134C THR* 1.3 57.9 + - - +
136C GLN* 3.4 7.7 + - - +
137C ALA* 2.9 24.9 + - - +
260F LEU* 4.5 17.3 - - + +
151G TYR* 4.8 3.8 - - - +
154G VAL* 3.8 29.5 - - + +
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Residues in contact with THR 134 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130C THR 2.9 17.5 + - - +
131C GLU* 3.0 12.6 + - - -
133C CYS* 1.3 75.4 - - - +
135C LYS* 1.3 59.4 + - - +
137C ALA* 3.7 6.8 - - - +
138C LEU* 2.9 36.7 + - - +
159E ASN* 3.1 10.7 + - - -
260F LEU* 3.6 30.5 - - + -
262F SER* 3.3 35.7 + - - +
264F GLN* 5.8 1.1 - - - +
268F LEU* 3.6 14.6 - - + -
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Residues in contact with LYS 135 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131C GLU 2.9 9.1 + - - +
132C LEU* 3.1 13.9 - - + +
134C THR* 1.3 76.6 - - - +
136C GLN* 1.3 63.0 + - + +
138C LEU* 3.3 0.6 + - - -
139C LEU* 2.9 46.7 + - - +
155E GLN* 3.5 23.7 - - - +
158E GLU* 3.3 25.7 + - - +
159E ASN* 3.1 28.8 - - - +
162E LEU* 3.6 17.2 - - + +
152G HIS* 4.8 14.6 + - + +
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Residues in contact with GLN 136 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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132C LEU 3.0 11.9 + - - +
133C CYS* 3.4 10.0 + - - +
134C THR 3.3 0.2 - - - -
135C LYS* 1.3 84.4 - - + +
137C ALA* 1.3 57.6 + - - +
139C LEU* 3.9 12.1 - - + +
140C ALA* 2.9 32.3 + - + +
154G VAL* 3.6 11.5 - - + +
155G VAL* 2.9 25.5 + - - +
156G HIS* 2.9 51.8 + - - +
157G PRO* 4.9 0.8 - - - +
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Residues in contact with ALA 137 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133C CYS 2.9 18.2 + - - +
134C THR* 3.7 8.7 - - + +
135C LYS 3.2 0.4 - - - -
136C GLN* 1.3 74.4 - - - +
138C LEU* 1.3 59.7 + - - +
140C ALA* 3.4 6.7 + - - +
141C GLU* 2.9 29.3 + - - +
260F LEU* 5.6 6.3 - - + -
268F LEU* 3.9 21.7 - - + +
156G HIS 6.1 0.2 - - - -
158G LEU* 4.5 11.4 - - + +
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Residues in contact with LEU 138 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C THR* 2.9 22.1 + - - +
135C LYS 3.7 3.4 - - - +
137C ALA* 1.3 73.6 - - - +
139C LEU* 1.3 66.0 + - - +
141C GLU* 3.0 9.7 + - - +
142C LEU* 2.9 20.7 + - - +
159E ASN* 3.4 36.6 - - + +
162E LEU* 4.1 13.2 - - + -
163E ALA* 3.7 25.4 - - + +
166E VAL* 3.8 21.2 - - + +
264F GLN* 4.4 8.3 - - + -
267F VAL* 4.3 12.8 - - + -
268F LEU* 3.9 26.7 - - + +
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Residues in contact with LEU 139 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135C LYS* 2.9 36.9 + - - +
136C GLN* 3.9 13.0 - - + +
138C LEU* 1.3 76.3 - - - +
140C ALA* 1.3 60.4 + - + +
142C LEU* 3.4 16.2 + - + +
143C GLU* 3.0 44.6 + - + +
162E LEU* 4.1 14.2 - - + +
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Residues in contact with ALA 140 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136C GLN* 2.9 22.3 + - - +
137C ALA* 3.7 6.5 - - - +
138C LEU 3.2 0.2 - - - -
139C LEU* 1.3 82.1 - - + +
141C GLU* 1.3 57.9 - - - +
143C GLU* 4.0 4.3 - - - +
144C GLU* 2.9 31.1 + - - +
156G HIS 4.7 4.7 - - - +
157G PRO 3.7 24.7 - - - +
158G LEU* 4.3 11.9 - - + -
159G ASP* 4.5 5.0 + - - +
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Residues in contact with GLU 141 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C ALA 2.9 17.6 + - - +
138C LEU* 3.0 9.2 + - - +
140C ALA* 1.3 78.1 - - - +
142C LEU* 1.3 58.4 + - - +
144C GLU* 3.5 13.6 + - - +
145C GLN* 2.8 26.0 + - - +
166E VAL* 3.4 14.5 - - + +
170E ARG* 2.3 41.6 + - - -
267F VAL 4.9 2.1 - - - +
268F LEU* 5.0 9.9 - - - +
271F LYS* 3.2 41.5 - - - +
274F TYR* 3.8 9.4 + - - +
158G LEU* 4.8 4.0 - - + +
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Residues in contact with LEU 142 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLN* 6.0 1.6 - - - +
138C LEU 2.9 12.1 + - - +
139C LEU* 3.6 18.2 - - + +
141C GLU* 1.3 75.9 - - - +
143C GLU* 1.3 77.1 + - - +
145C GLN* 3.0 21.9 + - - +
146C LYS* 2.9 27.2 + - + +
162E LEU* 4.7 19.1 - - + +
165E ALA* 4.7 11.7 - - + -
166E VAL* 4.0 24.9 - - + -
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Residues in contact with GLU 143 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139C LEU* 3.0 30.6 + - + +
140C ALA* 4.0 5.8 - - - +
142C LEU* 1.3 87.0 - - - +
144C GLU* 1.3 61.3 + - - +
146C LYS* 3.4 39.2 + - - +
147C ILE* 4.1 3.8 + - - +
159G ASP* 6.0 1.3 - - - +
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Residues in contact with GLU 144 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140C ALA 2.9 17.4 + - - +
141C GLU* 3.6 8.1 - - - +
143C GLU* 1.3 75.1 - - - +
145C GLN* 1.3 60.4 + - - +
147C ILE* 3.0 33.3 - - + +
148C VAL* 3.9 3.4 + - + +
271F LYS* 2.3 38.1 + - - -
274F TYR* 3.4 20.3 - - + -
158G LEU* 4.3 5.7 - - - +
159G ASP* 3.0 47.0 + - + +
160G LEU 5.6 2.5 - - - +
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Residues in contact with GLN 145 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C GLU* 2.8 19.0 + - - +
142C LEU* 3.0 21.4 + - - +
144C GLU* 1.3 76.4 - - - +
146C LYS* 1.3 64.6 + - - +
148C VAL* 3.2 12.2 - - - +
149C GLN* 3.0 32.2 + - - +
165E ALA 4.6 0.7 - - - +
166E VAL* 3.4 13.9 + - - +
169E GLY* 3.2 24.7 - - - -
170E ARG* 3.1 38.8 - - - +
173E VAL* 4.1 10.8 - - + -
274F TYR* 3.5 13.2 + - + +
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Residues in contact with LYS 146 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C LEU* 2.9 10.9 + - + +
143C GLU* 3.5 30.9 + - - +
144C GLU 3.2 0.2 - - - -
145C GLN* 1.3 78.1 - - - +
147C ILE* 1.3 73.0 + - - +
149C GLN* 3.3 10.9 + - + +
150C ALA* 2.9 33.5 + - + +
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Residues in contact with ILE 147 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143C GLU 4.1 2.0 + - - +
144C GLU* 3.0 27.7 + - + +
146C LYS* 1.3 95.1 - - - +
148C VAL* 1.3 67.9 + - + +
150C ALA* 3.3 7.8 + - + +
151C LYS* 2.9 30.4 + - + +
278F LEU* 6.5 1.8 - - + -
161G LYS* 4.6 36.1 - - + -
----------------------------------------------------------
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Residues in contact with VAL 148 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C GLU* 4.4 3.4 - - + +
145C GLN* 3.2 14.8 + - - +
147C ILE* 1.3 84.8 - - + +
149C GLN* 1.3 69.1 + - - +
151C LYS* 3.7 7.1 - - - +
152C LEU* 2.9 32.2 + - + +
173E VAL* 4.0 13.5 - - + -
274F TYR* 3.4 54.7 - - + +
277F ILE* 5.6 5.4 - - + -
278F LEU* 3.9 21.3 - - + -
----------------------------------------------------------
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Residues in contact with GLN 149 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A ASP* 5.7 3.2 + - - -
145C GLN* 3.0 37.7 + - - +
146C LYS* 3.5 11.1 - - + +
148C VAL* 1.3 80.8 - - - +
150C ALA* 1.3 59.9 - - - +
152C LEU* 5.4 0.2 - - - -
153C LYS* 3.5 23.7 + - + +
169E GLY* 3.9 11.0 - - - +
172E GLN* 3.2 29.5 - - + +
173E VAL* 4.1 5.9 - - + +
176E LEU* 3.7 24.7 - - + +
----------------------------------------------------------
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Residues in contact with ALA 150 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146C LYS* 2.9 21.8 + - + +
147C ILE* 3.9 8.5 - - + +
149C GLN* 1.3 75.5 - - - +
151C LYS* 1.3 64.8 + - - +
153C LYS* 3.4 13.4 + - - +
154C GLN* 3.3 16.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 151 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C ILE* 2.9 20.7 + - + +
148C VAL* 3.1 9.4 + - - +
150C ALA* 1.3 75.6 - - - +
152C LEU* 1.3 63.8 + - + +
154C GLN* 2.9 57.7 + - + +
155C THR* 3.5 8.9 + - + +
278F LEU* 3.4 37.8 + - + +
281F GLN* 5.7 8.7 - - + +
163G ASP 5.2 0.4 + - - -
164G PRO* 4.3 12.2 - - + +
165G ASP* 2.9 35.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 152 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C VAL* 2.9 20.2 + - + +
149C GLN 4.2 3.6 - - - +
151C LYS* 1.3 78.6 - - + +
153C LYS* 1.3 62.4 + - - +
155C THR* 2.9 21.4 + - - -
156C LEU* 3.2 12.4 + - - +
173E VAL* 3.8 19.1 - - + +
176E LEU* 3.6 20.6 - - + -
177E GLN* 3.5 34.8 - - + +
180E VAL* 4.3 8.3 - - + -
277F ILE* 4.2 13.2 - - + -
278F LEU* 6.6 0.2 - - + -
281F GLN* 3.5 43.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 153 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A ASP* 5.6 4.8 + - - -
149C GLN* 3.5 14.6 + - + +
150C ALA* 3.4 15.7 + - - +
151C LYS 3.2 0.4 - - - -
152C LEU* 1.3 76.8 - - - +
154C GLN* 1.3 52.0 + - - +
156C LEU* 3.8 10.6 - - + +
157C THR* 2.5 40.8 + - - +
176E LEU* 4.9 14.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 154 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150C ALA 3.3 7.8 + - - +
151C LYS* 2.9 46.4 + - + +
153C LYS* 1.3 74.8 - - - +
155C THR* 1.3 67.2 + - - +
157C THR* 3.1 9.5 + - - -
158C PHE* 2.9 26.5 + - - +
285F PHE* 4.8 4.9 - - - -
165G ASP* 4.4 4.9 + - - +
166G PRO* 4.4 22.2 - - - +
167G ALA* 5.1 1.2 - - - +
170G MET* 4.5 23.1 - - + +
----------------------------------------------------------
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Residues in contact with THR 155 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151C LYS* 4.0 11.7 - - + +
152C LEU* 2.9 11.1 + - - -
154C GLN* 1.3 81.3 - - - +
156C LEU* 1.3 61.6 + - - +
158C PHE* 3.0 10.2 + - - +
159C PHE* 2.9 36.6 + - - -
180E VAL* 3.3 23.3 - - - +
281F GLN* 3.4 27.5 + - + +
284F VAL* 6.0 1.3 - - - -
285F PHE* 3.6 32.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 156 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C LEU 3.2 7.4 + - - +
153C LYS* 3.9 11.9 - - + +
155C THR* 1.3 82.2 + - - +
157C THR* 1.3 57.3 + - - +
159C PHE* 3.3 10.4 + - + +
160C ASP* 2.9 38.1 + - - +
176E LEU* 4.2 18.4 - - + +
179E GLN* 3.3 32.8 - - + +
180E VAL* 3.5 41.5 - - + +
183E GLN* 4.8 14.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 157 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153C LYS* 2.5 26.7 + - - +
154C GLN* 3.1 12.7 + - - -
156C LEU* 1.3 76.8 - - - +
158C PHE* 1.3 56.7 + - - +
160C ASP* 3.4 6.7 + - + +
161C GLU* 2.9 45.1 + - + +
170G MET* 6.3 2.0 - - + -
----------------------------------------------------------
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Residues in contact with PHE 158 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C GLN 2.9 8.9 + - - +
155C THR* 3.0 7.2 + - - +
157C THR* 1.3 76.1 - - - +
159C PHE* 1.3 93.2 + + - +
161C GLU* 3.4 10.3 + - - +
162C LEU* 2.9 47.0 + - + +
285F PHE* 4.1 26.7 - + - -
288F MET* 4.5 8.3 - - + -
170G MET* 3.4 58.7 - - + +
173G LEU* 3.8 26.5 - - + -
174G LYS* 4.2 11.0 - - + -
----------------------------------------------------------
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Residues in contact with PHE 159 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155C THR* 2.9 19.9 + - - +
156C LEU* 3.7 10.8 - - + +
158C PHE* 1.3 103.5 - + - +
160C ASP* 1.3 57.4 + - - +
162C LEU* 3.0 8.3 + - + +
163C HIS* 2.9 28.6 + - - +
180E VAL* 4.0 9.0 - - + -
183E GLN* 3.2 41.9 - - + +
184E GLN* 3.3 37.2 - - + -
187E TRP* 4.5 9.3 + + - +
284F VAL* 4.5 12.1 - - + -
285F PHE* 5.8 1.1 - + - -
288F MET* 3.3 36.8 - - + -
----------------------------------------------------------
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Residues in contact with ASP 160 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C LEU* 2.9 23.2 + - - +
157C THR* 3.8 7.1 - - + +
159C PHE* 1.3 76.4 - - - +
161C GLU* 1.3 54.0 + - - +
163C HIS* 3.4 6.7 + - - +
164C ASN* 2.3 46.3 + - - +
183E GLN* 3.8 20.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 161 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157C THR* 2.9 35.3 + - + +
158C PHE* 3.7 10.6 - - - +
160C ASP* 1.3 76.8 - - + +
162C LEU* 1.3 57.2 + - - +
164C ASN* 3.6 9.3 - - + +
165C VAL* 2.9 35.6 + - + +
170G MET* 4.7 11.3 - - - +
174G LYS* 2.8 40.6 + - + +
----------------------------------------------------------
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Residues in contact with LEU 162 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C PHE* 2.9 30.6 + - + +
159C PHE* 3.0 11.2 + - + +
161C GLU* 1.3 74.0 - - - +
163C HIS* 1.3 59.1 + - - +
165C VAL* 3.4 4.3 + - + +
166C GLY* 2.9 25.5 + - - -
187E TRP* 3.5 40.6 - - + +
288F MET* 3.6 27.6 - - + -
292F MET* 5.0 3.1 - - - -
173G LEU* 4.2 9.0 - - + +
174G LYS* 3.6 35.2 - - + +
177G GLY* 4.8 8.7 - - - -
----------------------------------------------------------
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Residues in contact with HIS 163 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C PHE 2.9 14.4 + - - +
160C ASP* 4.0 7.9 - - - +
162C LEU* 1.3 76.3 - - - +
164C ASN* 1.3 59.4 + - - +
166C GLY* 3.8 2.1 - - - +
167C ARG* 2.9 31.3 + - + +
172C SER* 3.2 38.7 + - - +
173C ASP* 4.9 5.9 - - - +
183E GLN* 5.9 1.6 - - - +
187E TRP* 4.3 16.7 - + + +
----------------------------------------------------------
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Residues in contact with ASN 164 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160C ASP* 2.3 44.3 + - - +
161C GLU* 3.6 11.0 - - - +
163C HIS* 1.3 76.9 - - - +
165C VAL* 1.3 66.0 + - + +
167C ARG* 3.2 31.0 + - - +
168C ASP* 2.8 32.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 165 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161C GLU* 2.9 21.9 + - + +
162C LEU* 4.0 5.2 - - + +
164C ASN* 1.3 76.9 - - + +
166C GLY* 1.3 52.0 + - - +
168C ASP* 2.7 25.0 - - - +
169C HIS* 3.3 13.2 - - + +
174G LYS* 3.5 44.4 - - + +
175G CYS* 5.4 0.2 - - - -
177G GLY* 4.5 1.3 - - - -
178G GLU* 3.5 25.8 - - + +
181G ALA* 4.4 3.0 - - - +
----------------------------------------------------------
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Residues in contact with GLY 166 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C LEU 2.9 17.4 + - - -
163C HIS* 3.8 2.7 - - - -
165C VAL* 1.3 74.0 - - - +
167C ARG* 1.3 58.8 + - - +
168C ASP 2.7 14.9 - - - +
171C THR* 2.6 35.8 + - - +
172C SER* 4.0 1.1 - - - -
174C PHE* 4.3 7.6 - - - -
187E TRP* 6.1 0.4 - - - -
177G GLY 5.4 0.7 - - - -
181G ALA* 4.2 13.6 - - - +
----------------------------------------------------------
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Residues in contact with ARG 167 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163C HIS* 2.9 26.3 + - + +
164C ASN* 3.2 28.5 + - - +
166C GLY* 1.3 77.7 - - - +
168C ASP* 1.3 79.2 + - - +
170C GLY* 3.5 14.0 + - - -
172C SER* 3.5 28.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP 168 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164C ASN* 2.8 24.5 + - - +
165C VAL* 2.7 23.8 - - - +
166C GLY* 2.7 13.5 - - - +
167C ARG* 1.3 90.4 + - - +
169C HIS* 1.3 75.4 + - + +
170C GLY 3.2 0.7 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il