Contacts of the helix formed by residues 128 - 189 (chain E) in PDB entry 5LSJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 128 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126E SER* 3.3 16.0 + - - +
127E GLY* 1.3 85.6 - - - +
129E PRO* 1.3 63.2 - - + +
130E GLU* 3.0 16.6 + - + +
131E LYS* 3.1 19.6 + - + +
132E ASP* 2.6 21.6 - - - +
220F LEU* 6.5 0.9 - - + -
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Residues in contact with PRO 129 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127E GLY 3.6 10.5 - - - +
128E ILE* 1.3 86.3 - - + +
130E GLU* 1.3 58.4 + - + +
132E ASP* 3.6 6.5 + - - +
133E LEU* 2.9 33.4 + - - +
221F GLU* 4.2 9.6 - - + +
224F THR* 3.6 36.3 - - + +
225F TRP* 3.7 43.5 - - + +
228F LEU* 4.5 11.2 - - + -
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Residues in contact with GLU 130 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C GLU* 6.2 0.4 - - + -
128E ILE* 3.0 11.9 + - + +
129E PRO* 1.3 80.9 - - + +
131E LYS* 1.3 57.9 + - - +
133E LEU* 3.8 2.9 - - - +
134E HIS* 2.9 64.9 + - + -
224F THR* 5.7 3.1 - - + -
228F LEU* 4.0 32.3 - - + +
232F TYR* 4.1 10.3 + - - -
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Residues in contact with LYS 131 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C PRO* 3.4 34.8 - - - +
109C TYR 5.0 4.5 + - - +
110C SER* 5.9 1.2 - - - +
111C GLU* 3.3 33.0 + - - +
123E TRP* 4.2 15.7 - - - +
126E SER* 3.9 20.2 - - - +
128E ILE* 3.1 18.5 + - + +
130E GLU* 1.3 78.8 - - - +
132E ASP* 1.3 66.6 + - - +
134E HIS* 3.2 5.0 + - - +
135E SER* 3.0 29.5 + - - -
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Residues in contact with ASP 132 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105C LYS* 3.4 18.7 - - + +
123E TRP* 2.8 39.8 + - + -
125E PRO* 3.8 5.2 - - - +
126E SER* 3.7 22.7 + - - -
127E GLY 4.8 0.5 + - - -
128E ILE 2.6 34.0 + - - +
129E PRO* 3.7 6.1 - - + +
131E LYS* 1.3 76.4 - - - +
133E LEU* 1.3 63.4 + - - +
135E SER* 3.0 5.1 + - - -
136E VAL* 3.0 22.8 + - - +
225F TRP* 5.5 9.8 - - + -
130G PRO* 6.3 0.4 - - - -
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Residues in contact with LEU 133 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129E PRO 2.9 19.1 + - - +
130E GLU* 3.8 5.2 - - - +
132E ASP* 1.3 77.6 - - - +
134E HIS* 1.3 55.5 + - - +
136E VAL* 3.0 10.6 - - + +
137E MET* 2.9 45.1 + - + +
225F TRP* 4.6 6.9 - - + -
228F LEU* 3.7 27.4 - - + -
232F TYR* 3.9 24.9 - - + +
130G PRO* 3.8 40.4 - - + +
133G ILE* 3.9 24.2 - - + -
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Residues in contact with HIS 134 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C TYR* 5.0 3.8 - - - +
111C GLU* 2.5 45.9 + - + +
114C PHE* 3.3 53.2 - + + -
118C GLN* 5.6 0.2 + - - -
130E GLU* 2.9 51.8 + - + +
131E LYS 3.2 0.6 + - - +
133E LEU* 1.3 77.9 - - + +
135E SER* 1.3 62.2 + - - +
137E MET* 3.7 12.5 - - + -
138E ALA* 2.9 27.0 + - - +
232F TYR* 5.0 2.0 + - - -
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Residues in contact with SER 135 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104C CYS* 3.0 28.2 + - - +
105C LYS* 3.1 18.5 - - - -
107C THR 3.7 1.9 + - - +
108C PRO* 3.5 18.2 - - - +
109C TYR* 4.2 18.3 + - - +
131E LYS* 3.0 17.6 + - - -
132E ASP* 3.0 10.1 + - - -
134E HIS* 1.3 77.9 - - - +
136E VAL* 1.3 61.6 + - - +
138E ALA* 3.8 10.4 - - - +
139E PRO* 4.1 4.3 - - - +
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Residues in contact with VAL 136 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104C CYS* 3.5 33.1 - - - +
105C LYS* 3.7 11.6 - - + +
132E ASP 3.0 13.0 + - - +
133E LEU* 3.0 37.7 - - + +
135E SER* 1.3 76.9 - - - +
137E MET* 1.3 63.5 + - + +
139E PRO* 3.2 14.6 - - - +
140E TYR* 4.7 2.9 - - - -
130G PRO* 4.2 16.2 - - + +
131G ARG* 6.5 0.2 - - + -
134G LEU* 3.9 28.4 - - + +
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Residues in contact with MET 137 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114C PHE* 4.0 11.9 - - + -
118C GLN* 6.0 0.2 - - - +
133E LEU* 2.9 42.1 + - + +
134E HIS* 3.7 19.1 - - + +
136E VAL* 1.3 78.4 - - + +
138E ALA* 1.3 66.1 + - - +
139E PRO* 3.4 1.2 - - - -
140E TYR* 3.5 6.5 + - - +
141E PHE* 3.4 34.5 + - + -
232F TYR* 3.8 28.3 - - + +
133G ILE* 4.6 2.9 - - - -
134G LEU* 4.0 24.0 - - + -
137G VAL* 3.9 29.8 - - + -
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Residues in contact with ALA 138 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C TYR* 4.0 35.2 - - + -
114C PHE* 4.4 9.0 - - + -
117C LEU* 5.2 1.0 - - - +
134E HIS 2.9 17.4 + - - +
135E SER 3.8 7.4 - - - +
136E VAL 3.2 0.2 - - - -
137E MET* 1.3 76.5 - - - +
139E PRO* 1.3 70.3 - - + +
141E PHE* 3.1 5.8 + - - +
142E LEU* 2.9 29.1 + - + +
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Residues in contact with PRO 139 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104C CYS* 5.4 7.4 - - + -
135E SER 4.1 3.8 - - - +
136E VAL 3.2 18.6 - - - +
137E MET 3.5 1.1 - - - -
138E ALA* 1.3 93.6 - - + +
140E TYR* 1.3 67.3 + - + +
142E LEU* 3.2 15.5 + - + +
143E GLN* 2.9 29.6 + - - +
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Residues in contact with TYR 140 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100B ASN* 5.4 5.8 - - - -
136E VAL 4.7 6.5 - - - -
137E MET 3.5 5.3 + - - +
138E ALA 3.3 0.6 - - - -
139E PRO* 1.3 84.4 - - + +
141E PHE* 1.3 63.0 + - + +
143E GLN* 3.0 30.3 - - - +
144E GLN* 3.0 27.0 + - - +
134G LEU* 3.4 48.1 - - + +
137G VAL* 5.2 4.9 - - + -
138G ILE* 3.5 30.5 - - + -
141G ILE* 4.1 10.4 - - + +
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Residues in contact with PHE 141 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114C PHE* 3.5 37.7 - + + -
117C LEU* 3.4 21.5 - - + +
118C GLN* 3.9 18.6 - - + -
121C ILE* 3.3 15.8 - - + +
137E MET* 3.4 28.4 + - + +
138E ALA* 3.1 9.6 + - - +
140E TYR* 1.3 77.5 - - + +
142E LEU* 1.3 59.9 + - - +
144E GLN* 3.4 15.2 + - - -
145E ARG* 2.9 23.6 + - - +
232F TYR* 5.7 3.4 - + - -
137G VAL* 4.7 17.3 - - + -
140G THR* 5.6 0.2 - - - -
141G ILE* 3.9 22.4 - - + -
144G LYS* 6.1 2.2 - - - -
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Residues in contact with LEU 142 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C TYR* 3.7 26.5 - - + +
117C LEU* 3.6 26.9 - - + -
138E ALA* 2.9 32.2 + - + +
139E PRO* 3.2 17.0 + - + +
141E PHE* 1.3 75.0 - - - +
143E GLN* 1.3 61.2 + - - +
145E ARG* 3.1 22.8 + - - +
146E ASP* 2.9 36.7 + - - +
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Residues in contact with GLN 143 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97B GLU 5.7 4.5 - - - +
98B GLU 5.0 10.6 + - - -
99B GLY* 5.7 3.7 - - - -
100B ASN* 3.6 27.7 + - - +
139E PRO 2.9 10.6 + - - +
140E TYR* 3.0 49.9 + - - +
142E LEU* 1.3 71.7 - - - +
144E GLN* 1.3 60.6 + - - +
146E ASP* 4.0 7.1 - - - +
147E THR* 2.9 36.6 + - - +
138G ILE* 5.4 1.2 - - - +
141G ILE* 4.4 12.9 - - + +
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Residues in contact with GLN 144 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121C ILE* 3.4 33.3 - - - +
125C GLN* 4.7 5.9 - - - +
140E TYR 3.0 17.8 + - - +
141E PHE* 3.5 12.1 - - - +
143E GLN* 1.3 76.2 - - - +
145E ARG* 1.3 64.9 + - - +
147E THR* 3.8 4.1 - - - -
148E LEU* 2.9 43.9 + - + +
141G ILE* 3.7 46.2 + - + +
144G LYS* 4.2 20.9 + - - +
145G GLN* 5.6 5.6 - - + +
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Residues in contact with ARG 145 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117C LEU* 3.7 18.8 - - + +
120C GLU* 3.5 33.0 + - + -
121C ILE* 4.0 17.4 - - + +
124C LEU* 4.3 15.4 - - + +
141E PHE 2.9 14.2 + - - +
142E LEU* 3.1 25.7 + - - +
144E GLN* 1.3 76.5 - - - +
146E ASP* 1.3 85.9 + - - +
148E LEU* 3.5 4.6 + - - +
149E ARG* 2.8 56.9 + - - +
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Residues in contact with ASP 146 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142E LEU* 2.9 28.5 + - - +
143E GLN* 4.0 6.3 + - - +
144E GLN 3.3 0.2 - - - -
145E ARG* 1.3 103.8 + - - +
147E THR* 1.3 61.3 + - - +
149E ARG* 3.5 10.6 - - - +
150E ARG* 2.9 46.8 + - + +
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Residues in contact with THR 147 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97B GLU 4.5 6.9 + - - -
98B GLU* 5.0 5.1 + - - -
143E GLN* 2.9 20.5 + - - +
144E GLN* 3.8 5.4 - - - -
146E ASP* 1.3 74.0 - - - +
148E LEU* 1.3 66.5 + - - +
150E ARG* 3.2 33.0 + - - +
151E HIS* 3.0 42.0 + - + +
145G GLN* 4.0 17.3 - - + +
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Residues in contact with LEU 148 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121C ILE* 4.0 25.1 - - + +
124C LEU* 4.8 10.5 - - + -
125C GLN* 3.7 31.2 - - + +
128C TYR* 5.8 2.5 - - + -
144E GLN* 2.9 32.2 + - + +
145E ARG* 3.9 4.9 - - - +
147E THR* 1.3 76.2 - - - +
149E ARG* 1.3 57.0 + - - +
151E HIS* 3.3 10.4 + - + +
152E VAL* 2.9 36.6 + - + +
145G GLN* 4.4 19.1 - - + -
148G LEU* 3.6 31.0 - - + -
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Residues in contact with ARG 149 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120C GLU* 2.2 37.7 + - - +
124C LEU* 3.5 31.5 - - + +
145E ARG* 2.8 46.7 + - - +
146E ASP* 3.5 11.7 - - - +
148E LEU* 1.3 74.3 - - - +
150E ARG* 1.3 62.9 + - + +
152E VAL* 3.4 5.9 + - - +
153E GLN* 3.0 50.8 + - - +
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Residues in contact with ARG 150 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94B ASP* 4.0 42.2 + - - +
97B GLU* 3.4 41.2 + - - +
98B GLU* 4.9 2.6 - - - +
143E GLN 5.2 0.2 + - - -
146E ASP* 2.9 39.5 + - + +
147E THR* 3.2 40.6 + - - +
149E ARG* 1.3 77.1 - - + +
151E HIS* 1.3 66.0 + - - +
153E GLN* 3.9 5.5 - - - +
154E LYS* 2.9 30.5 + - - +
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Residues in contact with HIS 151 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94B ASP* 5.9 2.0 + - - -
128C TYR* 3.8 23.9 - + + -
147E THR* 3.0 29.1 + - + +
148E LEU* 3.5 16.6 - - + +
149E ARG 3.2 0.2 - - - -
150E ARG* 1.3 81.2 - - + +
152E VAL* 1.3 66.5 + - - +
154E LYS* 3.2 12.6 + - + +
155E GLN* 3.0 26.0 + - - +
145G GLN* 3.0 31.5 + - - -
148G LEU* 5.5 1.3 - - + -
149G LYS* 4.3 25.9 + - + +
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Residues in contact with VAL 152 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C LEU* 3.5 24.2 - - + +
127C LYS* 3.7 34.1 - - + +
128C TYR* 3.5 35.4 - - + +
131C GLU* 4.5 7.0 - - + +
148E LEU* 2.9 26.4 + - + +
149E ARG* 3.8 5.8 - - - +
151E HIS* 1.3 72.1 - - - +
153E GLN* 1.3 59.7 + - + +
155E GLN* 3.4 4.4 + - - +
156E GLU* 2.8 38.8 + - - +
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Residues in contact with GLN 153 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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127C LYS* 5.8 3.4 - - - +
149E ARG* 3.0 38.4 + - + +
150E ARG* 4.3 4.1 - - - +
152E VAL* 1.3 76.1 - - + +
154E LYS* 1.3 66.9 + - - +
156E GLU* 3.5 17.3 - - + +
157E ALA* 2.9 24.8 + - - +
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Residues in contact with LYS 154 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A TYR* 3.3 31.8 + - - -
34A GLU* 5.9 0.9 + - - -
91B GLU* 5.1 0.6 + - - -
94B ASP* 5.8 3.6 - - - +
150E ARG 2.9 20.7 + - - +
151E HIS* 3.4 13.5 - - + +
153E GLN* 1.3 77.2 - - - +
155E GLN* 1.3 68.6 + - + +
157E ALA* 3.2 4.8 + - - +
158E GLU* 3.0 22.3 + - + +
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Residues in contact with GLN 155 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C TYR* 4.8 3.8 - - + -
131C GLU* 4.1 11.2 - - + +
132C LEU* 3.6 30.9 - - + -
135C LYS* 3.5 24.6 - - - +
151E HIS 3.0 15.8 + - - +
152E VAL* 3.9 4.7 - - - +
154E LYS* 1.3 80.6 - - + +
156E GLU* 1.3 56.3 + - - +
158E GLU* 2.7 36.5 + - - +
159E ASN* 2.9 52.1 + - - +
152G HIS* 4.2 17.2 - - + -
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Residues in contact with GLU 156 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127C LYS* 3.4 36.6 + - - -
131C GLU* 3.6 16.9 - - - +
152E VAL* 2.8 21.8 + - - +
153E GLN* 3.5 19.4 - - + +
154E LYS 3.1 0.2 - - - -
155E GLN* 1.3 75.8 - - - +
157E ALA* 1.3 59.1 + - - +
159E ASN* 3.2 2.6 + - - +
160E GLN* 2.9 28.8 + - - +
263F SER* 3.5 36.5 + - - +
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Residues in contact with ALA 157 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153E GLN 2.9 16.4 + - - +
154E LYS* 3.7 4.0 - - - +
156E GLU* 1.3 73.9 - - - +
158E GLU* 1.3 64.7 + - - +
160E GLN* 3.1 9.6 + - - +
161E GLN* 3.0 24.8 + - - +
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Residues in contact with GLU 158 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135C LYS* 3.3 25.9 + - - +
154E LYS* 3.0 16.7 + - + +
155E GLN* 2.7 40.7 + - - +
157E ALA* 1.3 77.0 - - - +
159E ASN* 1.3 61.3 + - - +
161E GLN* 3.6 5.8 + - + +
162E LEU* 2.9 38.0 + - + +
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Residues in contact with ASN 159 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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131C GLU* 2.6 42.1 + - - +
134C THR* 3.1 15.8 + - - -
135C LYS* 3.1 30.4 - - - +
138C LEU* 3.4 9.5 - - + +
155E GLN* 2.9 29.4 + - - +
156E GLU 3.6 4.9 - - - +
157E ALA 3.2 0.2 - - - -
158E GLU* 1.3 78.6 - - - +
160E GLN* 1.3 59.4 + - - +
162E LEU* 4.2 5.1 - - - +
163E ALA* 2.9 31.0 + - - +
263F SER* 4.3 4.9 - - - +
264F GLN* 3.6 4.6 - - + +
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Residues in contact with GLN 160 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156E GLU 2.9 14.1 + - - +
157E ALA* 3.1 10.3 + - - +
159E ASN* 1.3 78.3 - - - +
161E GLN* 1.3 70.5 + - - +
163E ALA* 3.4 2.3 + - - +
164E ASP* 3.0 47.9 + - - +
263F SER* 5.6 0.4 - - - +
264F GLN* 3.8 29.5 - - - +
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Residues in contact with GLN 161 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157E ALA 3.0 14.9 + - - +
158E GLU* 3.9 5.8 - - - +
160E GLN* 1.3 85.4 + - - +
162E LEU* 1.3 62.6 + - - +
164E ASP* 3.0 28.6 + - - +
165E ALA* 3.0 20.8 + - - +
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Residues in contact with LEU 162 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135C LYS* 3.6 43.5 - - + +
138C LEU* 4.1 9.6 - - + -
139C LEU* 4.1 21.8 - - + +
142C LEU* 4.7 15.6 - - + +
158E GLU* 2.9 27.1 + - + +
159E ASN* 3.7 6.5 - - - +
160E GLN 3.3 0.2 - - - -
161E GLN* 1.3 76.6 - - - +
163E ALA* 1.3 58.1 + - - +
165E ALA* 3.1 11.3 + - + +
166E VAL* 3.0 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 163 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138C LEU* 3.7 15.6 - - + +
159E ASN 2.9 15.0 + - - +
160E GLN 3.7 0.9 - - - +
162E LEU* 1.3 74.3 - - - +
164E ASP* 1.3 60.5 + - - +
166E VAL* 3.0 10.0 + - - +
167E LEU* 2.9 32.5 + - - +
264F GLN* 3.3 28.7 - - + +
267F VAL* 3.7 19.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 164 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160E GLN* 3.0 45.0 + - - +
161E GLN* 3.0 27.2 + - - +
163E ALA* 1.3 76.5 - - - +
165E ALA* 1.3 64.0 + - - +
167E LEU* 3.2 16.8 + - - +
168E ALA* 3.0 21.7 + - - +
171E ARG* 5.6 0.3 + - - -
264F GLN* 5.1 1.7 - - - +
267F VAL* 6.1 0.3 - - - +
----------------------------------------------------------
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Residues in contact with ALA 165 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C LEU* 4.7 13.2 - - + -
145C GLN* 4.6 1.0 - - - +
161E GLN 3.0 11.2 + - - +
162E LEU* 3.1 13.9 + - + +
164E ASP* 1.3 75.8 - - - +
166E VAL* 1.3 63.8 + - - +
168E ALA* 3.2 9.4 + - - +
169E GLY* 2.9 19.8 + - - -
----------------------------------------------------------
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Residues in contact with VAL 166 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138C LEU* 3.8 31.6 - - + +
141C GLU* 3.4 33.9 - - + +
142C LEU* 4.0 15.9 - - + -
145C GLN* 3.4 9.8 + - - +
162E LEU 3.0 20.4 + - - +
163E ALA* 3.0 13.0 + - - +
165E ALA* 1.3 75.6 - - - +
167E LEU* 1.3 55.6 + - - +
169E GLY 3.1 1.6 + - - -
170E ARG* 2.9 41.4 + - + +
267F VAL* 4.7 6.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 167 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163E ALA 2.9 14.2 + - - +
164E ASP* 3.6 17.9 - - - +
166E VAL* 1.3 76.8 - - - +
168E ALA* 1.3 62.5 + - - +
170E ARG* 3.0 38.9 + - + +
171E ARG* 2.9 38.8 + - - +
267F VAL* 4.5 19.7 - - + -
270F THR* 5.5 3.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 168 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164E ASP 3.0 13.3 + - - +
165E ALA* 3.4 11.9 - - - +
167E LEU* 1.3 77.1 - - - +
169E GLY* 1.3 57.5 + - - +
171E ARG* 3.1 28.9 + - - +
172E GLN* 3.0 27.3 + - - +
----------------------------------------------------------
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Residues in contact with GLY 169 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145C GLN* 3.2 26.3 - - - -
149C GLN* 3.9 7.1 - - - +
165E ALA 2.9 11.8 + - - -
166E VAL 3.1 0.6 + - - -
168E ALA* 1.3 76.1 - - - +
170E ARG* 1.3 56.7 + - - +
172E GLN* 3.3 9.2 - - - +
173E VAL* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 170 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C GLU* 2.3 41.1 + - - +
145C GLN* 3.1 19.5 - - - +
166E VAL* 2.9 25.0 + - - +
167E LEU* 3.0 34.3 + - + +
169E GLY* 1.3 76.1 - - - +
171E ARG* 1.3 59.9 + - - +
173E VAL* 3.3 7.4 + - - +
174E GLU* 2.9 27.1 + - - +
267F VAL* 3.2 21.8 + - - +
270F THR* 2.8 41.8 + - - +
271F LYS* 4.4 0.4 - - - +
272F PRO* 3.5 29.1 - - + +
274F TYR* 3.6 7.0 - - - +
----------------------------------------------------------
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Residues in contact with ARG 171 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167E LEU* 2.9 23.7 + - - +
168E ALA* 3.1 37.7 + - - +
170E ARG* 1.3 73.4 - - - +
172E GLN* 1.3 65.8 + - - +
174E GLU* 3.6 15.2 - - - +
175E GLU* 2.9 38.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 172 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A ASP* 5.2 8.2 + - - -
149C GLN* 3.2 32.9 - - + +
168E ALA 3.0 14.9 + - - +
169E GLY* 3.3 12.6 - - - +
171E ARG* 1.3 79.3 - - + +
173E VAL* 1.3 56.6 + - - +
175E GLU* 3.4 23.1 + - - +
176E LEU* 2.9 63.0 + - + +
----------------------------------------------------------
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Residues in contact with VAL 173 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145C GLN* 4.1 9.4 - - + +
148C VAL* 4.0 22.4 - - + -
149C GLN* 4.1 20.2 - - + +
152C LEU* 3.8 10.1 - - + +
169E GLY 2.9 19.1 + - - +
170E ARG* 3.3 9.6 + - - +
172E GLN* 1.3 74.2 - - - +
174E GLU* 1.3 62.9 + - - +
176E LEU* 3.3 7.8 + - - +
177E GLN* 3.0 36.6 + - - +
272F PRO* 6.4 0.9 - - + -
274F TYR* 4.2 13.9 - - + -
277F ILE* 4.1 16.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 174 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170E ARG 2.9 16.1 + - - +
171E ARG* 3.6 15.5 - - - +
172E GLN 3.2 0.4 - - - -
173E VAL* 1.3 77.8 - - - +
175E GLU* 1.3 60.1 + - - +
177E GLN* 3.1 18.9 - - + +
178E LEU* 2.9 32.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 175 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171E ARG* 2.9 25.0 + - - +
172E GLN* 3.4 30.9 + - - +
174E GLU* 1.3 78.1 - - - +
176E LEU* 1.3 61.0 + - + +
178E LEU* 3.3 12.6 + - + +
179E GLN* 2.9 47.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 176 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149C GLN* 3.7 39.5 - - + +
152C LEU* 3.6 20.6 - - + -
153C LYS* 4.9 12.6 - - + -
156C LEU* 4.2 14.1 - - + +
172E GLN* 2.9 47.7 + - - +
173E VAL* 3.5 6.7 - - - +
175E GLU* 1.3 80.0 - - + +
177E GLN* 1.3 58.9 + - - +
179E GLN* 3.0 24.4 + - - +
180E VAL* 2.9 27.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 177 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C LEU* 3.5 14.7 - - + +
173E VAL* 3.0 23.3 + - - +
174E GLU* 3.1 21.8 - - + +
176E LEU* 1.3 76.5 - - - +
178E LEU* 1.3 57.4 + - - +
180E VAL* 3.2 10.1 + - + +
181E GLN* 2.9 29.3 + - - +
277F ILE* 3.3 37.8 - - + +
281F GLN* 5.0 6.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 178 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174E GLU* 2.9 20.8 + - + +
175E GLU* 3.4 15.7 - - + +
176E LEU 3.1 0.2 - - - -
177E GLN* 1.3 79.7 - - - +
179E GLN* 1.3 59.9 + - + +
181E GLN* 3.6 11.0 + - - +
182E ALA* 2.9 35.1 + - + +
----------------------------------------------------------
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Residues in contact with GLN 179 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C LEU* 3.3 29.9 - - + +
175E GLU* 2.9 33.3 + - + +
176E LEU* 3.0 18.0 + - - +
178E LEU* 1.3 78.8 - - + +
180E VAL* 1.3 65.3 + - - +
182E ALA* 3.1 8.1 + - + +
183E GLN* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 180 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C LEU* 4.3 13.2 - - + +
155C THR* 3.3 24.5 - - - +
156C LEU* 3.5 15.7 - - + +
159C PHE* 4.0 7.8 - - + -
176E LEU 2.9 17.9 + - - +
177E GLN* 3.2 15.0 + - - +
179E GLN* 1.3 75.6 - - - +
181E GLN* 1.3 60.9 + - + +
183E GLN 3.9 0.2 - - - -
184E GLN* 2.9 28.8 + - - +
281F GLN* 3.3 30.1 - - - +
284F VAL* 4.6 19.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 181 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177E GLN 2.9 16.2 + - - +
178E LEU* 4.1 9.5 - - - +
180E VAL* 1.3 79.3 - - + +
182E ALA* 1.3 57.5 + - - +
184E GLN* 3.9 20.0 - - - +
185E GLN* 2.9 45.2 + - + +
284F VAL* 6.1 0.2 - - - -
----------------------------------------------------------
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Residues in contact with ALA 182 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178E LEU* 2.9 26.9 + - + +
179E GLN* 3.1 11.6 + - + +
181E GLN* 1.3 75.8 - - - +
183E GLN* 1.3 60.0 + - + +
185E GLN* 3.2 19.9 + - - +
186E ALA* 2.9 26.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 183 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C LEU* 4.8 14.8 - - + +
159C PHE* 3.2 45.0 - - + +
160C ASP* 3.8 21.1 + - - +
163C HIS* 5.9 1.6 - - - +
179E GLN* 2.9 16.0 + - - +
180E VAL* 5.4 0.2 - - - -
182E ALA* 1.3 74.3 - - + +
184E GLN* 1.3 65.1 + - - +
186E ALA* 3.2 10.6 + - + +
187E TRP* 3.0 32.9 + - + -
----------------------------------------------------------
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Residues in contact with GLN 184 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C PHE* 3.3 15.6 - - + -
180E VAL 2.9 20.4 + - - +
181E GLN* 3.5 20.8 - - - +
182E ALA 3.2 0.2 - - - -
183E GLN* 1.3 76.2 - - - +
185E GLN* 1.3 56.5 + - - +
187E TRP* 3.0 8.3 + - - +
188E GLN* 2.9 41.8 + - - +
284F VAL* 3.2 53.3 - - + +
287F CYS* 3.6 20.2 - - - +
288F MET* 4.6 8.7 - - + +
----------------------------------------------------------
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Residues in contact with GLN 185 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181E GLN* 2.9 31.6 + - + +
182E ALA* 3.2 24.7 - - - +
184E GLN* 1.3 74.5 - - - +
186E ALA* 1.3 56.5 + - - +
188E GLN* 2.9 21.7 + - + +
189E ALA* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 186 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182E ALA 2.9 15.4 + - - +
183E GLN* 3.2 18.6 - - + +
184E GLN 3.1 0.4 - - - -
185E GLN* 1.3 78.9 - - - +
187E TRP* 1.3 61.5 + - + +
189E ALA* 3.6 16.4 + - - +
190E LEU* 4.6 5.9 + - - +
----------------------------------------------------------
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Residues in contact with TRP 187 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C PHE* 4.5 15.6 + + - -
162C LEU* 3.5 41.6 - - + +
163C HIS* 4.3 19.5 - + + +
174C PHE* 3.9 44.2 - + + -
183E GLN* 3.0 29.3 + - + +
184E GLN 3.6 6.5 - - - +
186E ALA* 1.3 77.6 - - + +
188E GLN* 1.3 60.7 - - - +
189E ALA 3.3 1.1 + - - -
190E LEU* 3.6 40.3 + - + +
191E HIS 5.2 0.2 + - - -
288F MET* 3.7 38.8 - - + -
291F VAL* 3.8 15.9 - - + +
292F MET* 5.4 7.9 - - + -
295F LEU* 5.1 3.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 188 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184E GLN* 2.9 30.4 + - + +
185E GLN* 2.9 33.1 + - + +
187E TRP* 1.3 74.1 - - + +
189E ALA* 1.3 63.5 + - - +
190E LEU 3.1 3.6 + - - -
191E HIS* 3.3 21.8 + - - +
287F CYS* 3.6 29.4 - - - -
288F MET* 6.0 1.3 - - + -
291F VAL* 4.3 15.4 - - + +
----------------------------------------------------------
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Residues in contact with ALA 189 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175C ARG* 5.3 11.0 - - - -
185E GLN 2.9 10.2 + - - +
186E ALA* 3.7 15.5 - - - +
187E TRP 3.3 1.4 - - - -
188E GLN* 1.3 73.0 - - - +
190E LEU* 1.3 61.2 + - + +
191E HIS 3.0 7.1 + - - -
192E ARG* 3.4 20.4 + - - +
193E GLU* 2.9 18.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il