Contacts of the helix formed by residues 273 - 315 (chain D) in PDB entry 5LSJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 273 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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271D LYS 3.5 3.2 + - - +
272D PRO* 1.3 68.6 - - - +
274D TYR* 1.3 59.1 + - - +
275D GLN* 3.1 13.4 + - - +
276D LYS* 2.9 42.5 + - + +
277D ILE* 3.2 24.0 + - - +
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Residues in contact with TYR 274 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A GLU* 3.6 20.0 + - - -
144A GLU* 3.4 33.0 - - + -
145A GLN* 3.6 24.0 + - + -
148A VAL* 3.6 42.2 - - + -
170B ARG* 4.3 3.6 - - - +
173B VAL* 4.2 17.7 - - + -
271D LYS* 4.7 7.4 - - + -
272D PRO* 3.1 43.5 + - + +
273D ASP* 1.3 71.5 + - - +
275D GLN* 1.3 63.0 + - - +
276D LYS 3.3 0.2 - - - -
277D ILE* 2.8 34.0 + - + +
278D LEU* 3.0 19.0 + - + +
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Residues in contact with GLN 275 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273D ASP* 3.1 7.7 + - - +
274D TYR* 1.3 78.0 - - - +
276D LYS* 1.3 62.9 + - - +
278D LEU* 3.1 11.9 + - + +
279D GLN* 2.9 31.9 + - + +
160N LEU* 3.8 25.9 - - + +
161N LYS* 3.2 10.4 - - - +
162N TYR* 3.1 48.6 + - + +
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Residues in contact with LYS 276 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273D ASP* 2.9 36.9 + - + +
275D GLN* 1.3 76.8 - - - +
277D ILE* 1.3 62.1 + - + +
279D GLN* 3.6 15.8 - - - +
280D ASN* 2.9 55.0 + - - +
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Residues in contact with ILE 277 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A VAL* 5.5 4.7 - - + -
152A LEU* 4.4 18.8 - - + -
173B VAL* 4.7 15.3 - - + +
177B GLN* 4.1 33.4 - - - +
272D PRO* 5.3 7.2 - - + -
273D ASP 3.2 19.3 - - - +
274D TYR* 2.8 33.5 + - + +
276D LYS* 1.3 80.6 - - + +
278D LEU* 1.3 64.5 + - + +
280D ASN* 3.1 8.8 + - - +
281D GLN* 2.9 31.5 + - - +
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Residues in contact with LEU 278 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A ILE* 5.7 6.1 - - + +
148A VAL* 3.8 23.3 - - + -
151A LYS* 4.0 37.0 + - + +
274D TYR* 3.0 36.4 + - + +
275D GLN* 3.7 10.3 - - + +
277D ILE* 1.3 77.2 - - + +
279D GLN* 1.3 63.8 + - - +
281D GLN* 3.2 12.9 + - - +
282D SER* 3.0 20.8 + - - -
161N LYS* 5.8 4.0 - - + -
162N TYR* 4.1 25.1 - - + +
163N ASP 3.9 24.5 - - - +
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Residues in contact with GLN 279 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275D GLN* 2.9 24.1 + - - +
276D LYS* 3.6 18.7 - - - +
278D LEU* 1.3 75.9 - - - +
280D ASN* 1.3 60.9 + - - +
282D SER* 2.9 24.4 + - - +
283D LYS* 3.0 16.6 + - + +
162N TYR* 3.3 48.6 + - + +
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Residues in contact with ASN 280 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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177B GLN* 4.1 20.5 - - - +
276D LYS* 2.9 50.9 + - - +
277D ILE* 3.1 7.4 + - - +
279D GLN* 1.3 78.0 - - - +
281D GLN* 1.3 59.7 + - - +
283D LYS* 3.2 33.5 + - - +
284D VAL* 2.9 34.7 + - + +
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Residues in contact with GLN 281 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151A LYS* 5.2 12.3 - - + +
152A LEU* 3.4 33.6 - - + +
155A THR* 3.6 25.5 - - + +
177B GLN* 4.1 22.6 - - - +
180B VAL* 3.6 22.8 - - - +
277D ILE* 2.9 18.0 + - + +
278D LEU* 3.3 13.7 - - + +
279D GLN 3.1 0.2 - - - -
280D ASN* 1.3 76.7 - - - +
282D SER* 1.3 66.5 + - - +
284D VAL* 2.9 22.2 + - - +
285D PHE* 3.0 19.9 + - + -
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Residues in contact with SER 282 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278D LEU 3.0 12.1 + - - -
279D GLN* 2.9 13.2 + - - -
281D GLN* 1.3 76.3 - - - +
283D LYS* 1.3 59.4 + - - +
285D PHE* 3.8 7.4 + - - +
286D ASP* 3.5 24.7 + - - +
162N TYR* 5.6 5.8 - - - -
165N ASP* 3.7 27.0 + - - -
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Residues in contact with LYS 283 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279D GLN* 3.0 13.4 + - + +
280D ASN* 3.2 44.9 + - - +
282D SER* 1.3 75.3 - - - +
284D VAL* 1.3 65.9 + - + +
285D PHE 3.2 0.4 - - - -
286D ASP* 3.1 13.8 + - + +
287D CYS* 3.0 22.9 + - - +
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Residues in contact with VAL 284 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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155A THR* 6.4 0.4 - - - -
159A PHE* 5.1 10.1 - - + -
180B VAL* 4.9 15.5 - - + -
181B GLN* 6.2 0.4 - - + -
184B GLN* 3.3 44.3 + - + +
280D ASN* 2.9 25.5 + - + +
281D GLN* 2.9 19.7 + - - +
283D LYS* 1.3 77.4 - - + +
285D PHE* 1.3 75.1 + - + +
287D CYS* 3.2 4.2 + - - +
288D MET* 2.9 22.6 + - + +
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Residues in contact with PHE 285 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154A GLN* 5.6 0.4 - - - -
155A THR* 3.8 34.5 - - + -
158A PHE* 3.4 41.1 - + + -
159A PHE* 5.7 1.6 - + - -
281D GLN* 3.0 20.0 + - + -
282D SER* 4.0 10.5 - - - +
283D LYS 3.2 0.2 - - - -
284D VAL* 1.3 86.7 - - + +
286D ASP* 1.3 58.9 + - - +
288D MET* 3.3 8.9 + - - +
289D GLU* 2.9 26.3 + - - +
169N HIS* 4.1 32.3 - + + +
170N MET* 3.5 36.3 - - + -
173N LEU* 5.1 5.8 - - + +
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Residues in contact with ASP 286 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282D SER* 3.5 17.6 + - - +
283D LYS* 3.1 15.6 + - + +
285D PHE* 1.3 76.5 - - - +
287D CYS* 1.3 65.7 + - - +
289D GLU* 2.9 27.7 + - - +
290D LEU* 3.0 17.0 + - - +
169N HIS* 5.3 6.2 - - - -
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Residues in contact with CYS 287 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184B GLN* 4.1 17.5 - - - +
188B GLN* 4.0 27.6 - - - -
283D LYS 3.0 12.2 + - - +
284D VAL* 3.5 8.1 - - - +
286D ASP* 1.3 74.5 - - - +
288D MET* 1.3 58.6 + - - +
290D LEU* 3.4 18.3 + - + +
291D VAL* 2.9 35.4 + - - +
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Residues in contact with MET 288 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158A PHE* 4.6 12.3 - - + -
159A PHE* 3.5 35.0 - - + -
162A LEU* 3.4 28.3 - - + -
184B GLN* 5.2 7.6 - - + +
187B TRP* 3.3 47.1 - - + -
188B GLN* 6.4 0.7 - - - -
284D VAL* 2.9 13.6 + - + +
285D PHE* 3.5 13.5 - - + +
287D CYS* 1.3 77.7 - - - +
289D GLU* 1.3 63.3 + - - +
291D VAL* 3.2 13.8 + - + +
292D MET* 3.0 26.8 + - + +
173N LEU* 5.4 5.4 - - + -
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Residues in contact with GLU 289 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285D PHE 2.9 12.6 + - - +
286D ASP* 2.9 23.0 + - - +
288D MET* 1.3 75.7 - - - +
290D LEU* 1.3 60.6 + - - +
292D MET* 3.1 8.5 + - - +
293D ASP* 2.9 43.9 + - - +
169N HIS* 6.1 3.4 - - + +
173N LEU* 5.4 19.1 - - + -
176N ARG* 4.4 13.7 + - - +
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Residues in contact with LEU 290 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286D ASP* 3.0 10.4 + - + +
287D CYS* 3.4 29.6 - - + +
289D GLU* 1.3 76.2 - - - +
291D VAL* 1.3 72.1 - - + +
293D ASP* 3.5 13.6 - - + +
294D GLU* 3.0 26.4 + - + +
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Residues in contact with VAL 291 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187B TRP* 3.7 36.3 - - + +
188B GLN* 4.4 18.6 - - + -
190B LEU* 5.4 3.8 - - + -
194B GLN* 4.6 2.8 + - - +
287D CYS* 2.9 30.3 + - - +
288D MET* 3.2 17.5 - - + +
290D LEU* 1.3 82.3 - - + +
292D MET* 1.3 61.8 + - + +
294D GLU* 3.3 16.6 + - - +
295D LEU* 3.0 27.4 + - + +
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Residues in contact with MET 292 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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162A LEU* 4.5 15.7 - - + -
174A PHE* 5.1 0.2 - - + -
187B TRP* 4.2 27.4 - - + -
288D MET* 3.0 18.1 + - + +
289D GLU* 3.1 7.8 + - - +
291D VAL* 1.3 75.4 - - + +
293D ASP* 1.3 62.9 + - - +
295D LEU* 3.7 10.9 - - + +
296D GLN* 2.9 28.1 + - - +
173N LEU* 3.6 15.3 - - + +
176N ARG* 3.6 21.3 + - - +
177N GLY* 3.5 37.7 - - - -
180N VAL* 4.4 18.8 - - + -
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Residues in contact with ASP 293 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289D GLU* 2.9 31.4 + - - +
290D LEU* 3.5 15.7 - - + +
291D VAL 3.2 0.2 - - - -
292D MET* 1.3 74.1 - - - +
294D GLU* 1.3 64.2 + - - +
296D GLN* 3.2 6.0 + - - +
297D GLY* 2.9 20.1 + - - -
176N ARG* 2.3 40.7 + - - +
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Residues in contact with GLU 294 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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191B HIS* 2.6 43.1 + - + +
194B GLN* 3.1 36.9 + - + +
195B ARG* 5.3 0.2 - - - +
290D LEU* 3.0 15.8 + - + +
291D VAL* 3.6 16.9 - - - +
293D ASP* 1.3 75.8 - - - +
295D LEU* 1.3 62.2 + - - +
297D GLY* 3.2 2.6 + - - +
298D SER* 2.9 22.3 + - - +
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Residues in contact with LEU 295 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174A PHE* 3.6 36.6 - - + -
178A LEU* 4.7 20.0 - - + -
187B TRP* 4.8 4.0 - - + -
190B LEU* 4.6 11.4 - - + -
194B GLN* 3.0 38.3 + - + +
291D VAL* 3.0 18.9 + - + +
292D MET* 3.7 13.2 - - + +
294D GLU* 1.3 76.4 - - - +
296D GLN* 1.3 55.7 + - - +
298D SER* 3.0 6.5 + - - -
299D VAL* 3.0 42.5 + - + +
180N VAL* 4.3 14.1 - - + -
184N ILE* 6.0 3.6 - - + -
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Residues in contact with GLN 296 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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292D MET 2.9 17.0 + - - +
293D ASP* 3.2 5.5 + - - +
295D LEU* 1.3 74.9 - - - +
297D GLY* 1.3 57.2 + - - +
299D VAL* 3.1 26.7 - - + +
300D LYS* 3.8 13.7 - - + +
176N ARG* 3.4 36.1 + - - +
179N THR* 3.8 20.4 + - - -
180N VAL* 3.6 19.6 - - + +
183N GLU* 5.8 1.1 - - - +
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Residues in contact with GLY 297 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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293D ASP 2.9 13.9 + - - -
294D GLU* 3.6 3.6 - - - -
295D LEU 3.1 0.4 - - - -
296D GLN* 1.3 76.1 - - - +
298D SER* 1.3 65.4 + - - +
299D VAL 3.2 1.6 - - - -
300D LYS* 3.1 9.3 + - - +
301D GLN* 3.0 21.4 + - - +
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Residues in contact with SER 298 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A LEU* 5.8 2.7 - - - -
194B GLN* 3.2 42.3 + - - +
197B LEU* 3.9 14.5 - - - +
198B VAL* 4.2 13.8 - - - +
294D GLU* 2.9 10.3 + - - +
295D LEU* 3.5 4.7 - - - -
297D GLY* 1.3 75.2 - - - +
299D VAL* 1.3 61.6 + - - +
301D GLN* 3.3 10.1 + - - +
302D LEU* 3.0 22.3 + - - +
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Residues in contact with VAL 299 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295D LEU* 3.0 24.1 + - + +
296D GLN* 3.1 28.7 - - + +
298D SER* 1.3 76.3 - - - +
300D LYS* 1.3 67.8 + - + +
302D LEU* 2.9 24.3 + - + +
303D GLN* 2.5 28.4 + - - +
180N VAL* 4.9 8.1 - - + -
183N GLU* 3.8 22.4 - - + +
184N ILE* 3.7 30.7 - - + -
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Residues in contact with LYS 300 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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296D GLN* 3.8 14.1 - - + +
297D GLY* 3.1 10.6 + - - +
299D VAL* 1.3 83.4 - - + +
301D GLN* 1.3 64.3 + - - +
303D GLN* 2.9 10.5 - - - +
304D ALA* 3.0 29.9 + - - +
183N GLU* 5.8 0.7 - - - +
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Residues in contact with GLN 301 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197B LEU* 5.0 1.6 - - + -
198B VAL* 3.6 36.9 - - + +
201B LEU* 3.2 29.7 + - + +
297D GLY 3.0 12.5 + - - +
298D SER* 3.6 11.7 - - - +
300D LYS* 1.3 76.9 - - - +
302D LEU* 1.3 61.2 + - - +
304D ALA* 4.1 5.0 - - - +
305D PHE* 3.7 8.8 + - - +
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Residues in contact with LEU 302 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181A LEU* 3.5 43.5 - - + -
185A SER* 3.9 21.8 - - - +
197B LEU* 4.4 14.4 - - + -
201B LEU* 3.8 9.9 - - + -
298D SER 3.0 12.0 + - - +
299D VAL* 2.9 15.2 + - - +
301D GLN* 1.3 73.9 - - - +
303D GLN* 1.3 65.5 + - + +
304D ALA 3.1 2.0 - - - -
305D PHE* 2.8 25.6 + - + +
306D MET* 3.0 16.4 + - + -
184N ILE* 6.2 2.5 - - + -
187N ALA* 4.1 16.6 - - + -
191N LEU* 4.4 13.2 - - + -
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Residues in contact with GLN 303 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299D VAL* 2.5 41.4 + - - +
300D LYS* 2.9 22.8 - - - +
302D LEU* 1.3 73.6 - - + +
304D ALA* 1.3 61.0 + - - +
305D PHE 3.2 0.2 - - - -
306D MET* 3.5 31.2 - - + -
307D ASP* 2.9 42.7 + - - +
183N GLU* 3.6 33.7 + - - +
187N ALA* 5.4 4.1 - - + +
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Residues in contact with ALA 304 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300D LYS 3.0 20.0 + - - +
301D GLN* 4.1 6.3 - - - +
303D GLN* 1.3 78.7 - - - +
305D PHE* 1.3 61.6 + - - +
307D ASP* 3.2 9.3 + - - +
308D GLU* 3.0 24.3 + - - +
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Residues in contact with PHE 305 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185A SER* 4.2 16.4 - - - -
188A LEU* 3.4 35.7 - - + -
189A GLN* 3.5 27.6 - - - -
192A ARG* 4.2 18.8 - - - -
201B LEU* 3.5 37.7 - - + -
301D GLN 3.7 3.0 + - - +
302D LEU* 2.8 19.1 + - + +
304D ALA* 1.3 75.3 - - - +
306D MET* 1.3 61.5 + - + +
308D GLU* 3.5 25.9 - - - +
309D SER* 2.9 28.3 + - - -
191N LEU* 5.9 1.1 - - + -
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Residues in contact with MET 306 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A LEU* 5.8 1.1 - - + -
302D LEU* 3.0 20.9 + - + +
303D GLN* 3.6 27.6 - - + +
304D ALA 3.2 0.4 - - - -
305D PHE* 1.3 81.4 - - + +
307D ASP* 1.3 57.7 + - - +
309D SER* 2.5 23.3 + - - +
310D THR* 2.9 17.1 + - - +
187N ALA* 3.7 22.0 - - + +
190N SER* 3.6 19.7 - - - +
191N LEU* 3.5 50.9 - - + -
194N LEU* 3.6 10.3 - - + +
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Residues in contact with ASP 307 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303D GLN* 2.9 31.8 + - - +
304D ALA* 3.6 7.3 - - - +
306D MET* 1.3 76.0 - - - +
308D GLU* 1.3 61.0 + - - +
310D THR* 3.1 13.4 - - + +
311D GLN* 2.9 30.5 + - - +
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Residues in contact with GLU 308 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A ARG* 3.2 26.3 + - - +
304D ALA 3.0 13.5 + - - +
305D PHE* 3.5 26.6 - - + +
307D ASP* 1.3 76.1 - - - +
309D SER* 1.3 60.8 + - - +
311D GLN* 3.8 16.1 - - - +
312D CYS* 3.0 26.9 + - - +
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Residues in contact with SER 309 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A LEU* 3.9 26.4 - - - +
192A ARG* 3.2 22.2 + - - +
305D PHE* 2.9 18.3 + - - -
306D MET* 2.5 26.7 + - - -
308D GLU* 1.3 75.4 - - - +
310D THR* 1.3 60.6 + - - +
313D PHE* 2.9 38.0 + - - +
194N LEU* 3.3 12.0 - - - +
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Residues in contact with THR 310 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306D MET 2.9 16.7 + - - +
307D ASP* 3.1 21.8 - - - +
309D SER* 1.3 76.5 + - - +
311D GLN* 1.3 60.8 + - + +
313D PHE* 3.7 5.1 - - - +
314D GLN* 2.9 29.3 + - - +
194N LEU* 3.6 29.8 - - + +
197N GLN* 4.2 8.8 + - - +
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Residues in contact with GLN 311 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307D ASP 2.9 17.1 + - - +
308D GLU* 3.8 16.4 + - - +
310D THR* 1.3 78.7 - - + +
312D CYS* 1.3 67.6 + - - +
314D GLN* 3.2 6.7 + - - +
315D LYS* 2.9 36.9 + - + +
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Residues in contact with CYS 312 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A ARG* 3.0 25.8 - - - +
195A VAL* 6.0 0.2 - - - +
196A GLU* 4.3 19.5 - - - -
308D GLU 3.0 10.5 + - - +
311D GLN* 1.3 84.1 - - - +
313D PHE* 1.3 63.5 + - - +
315D LYS* 3.4 23.2 + - - +
316D VAL* 3.9 8.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 313 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A LEU* 5.3 9.6 - - + -
191A ILE* 5.0 0.9 - - + -
192A ARG* 3.5 52.5 - - + -
195A VAL* 3.9 29.8 - - + -
196A GLU* 5.1 3.1 - - + -
309D SER* 2.9 23.5 + - - +
310D THR* 3.9 3.6 - - - +
311D GLN 3.2 0.2 - - - -
312D CYS* 1.3 83.0 - - + +
314D GLN* 1.3 60.3 + - - +
315D LYS 3.3 0.4 - - - -
316D VAL* 3.2 21.9 - - - +
194N LEU* 4.1 16.2 - - + -
197N GLN* 4.3 19.2 - - + +
198N GLY* 3.6 31.2 - - - -
201N PHE* 3.2 18.1 - + + -
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Residues in contact with GLN 314 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310D THR 2.9 17.4 + - - +
311D GLN* 3.2 5.8 + - - +
313D PHE* 1.3 75.9 - - - +
315D LYS* 1.3 58.6 + - - +
316D VAL* 3.0 13.4 + - - +
317D SER* 3.7 21.9 + - - -
197N GLN* 5.5 6.1 + - - +
201N PHE* 5.7 2.4 - - - -
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Residues in contact with LYS 315 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311D GLN* 2.9 26.5 + - + +
312D CYS* 3.4 23.6 - - - +
313D PHE 3.3 1.0 - - - -
314D GLN* 1.3 75.1 + - - +
316D VAL* 1.3 60.7 + - - +
317D SER 3.2 7.1 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il