Contacts of the helix formed by residues 273 - 315 (chain F) in PDB entry 5LSJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 273 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271F LYS 3.6 2.3 + - - -
272F PRO* 1.3 70.7 - - - +
274F TYR* 1.3 60.1 + - - +
275F GLN* 3.0 14.3 + - - +
276F LYS* 2.8 47.2 + - + +
277F ILE* 3.3 23.8 + - - +
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Residues in contact with TYR 274 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141C GLU* 3.8 6.1 + - + -
144C GLU* 3.4 32.5 - - + -
145C GLN* 3.5 28.2 + - + +
148C VAL* 3.4 45.5 - - + -
170E ARG* 3.6 18.0 - - - +
173E VAL* 4.2 17.3 - - + -
271F LYS* 4.0 12.8 - - + -
272F PRO* 3.2 32.4 + - + -
273F ASP* 1.3 71.5 + - - +
275F GLN* 1.3 63.2 + - - +
276F LYS 3.2 0.4 - - - -
277F ILE* 2.8 34.4 + - + +
278F LEU* 3.0 18.4 + - + +
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Residues in contact with GLN 275 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273F ASP* 3.0 8.7 + - - +
274F TYR* 1.3 77.0 - - - +
276F LYS* 1.3 62.2 + - - +
278F LEU* 3.1 13.4 + - - +
279F GLN* 2.9 31.6 + - + +
160G LEU* 5.5 12.5 + - - +
161G LYS 3.9 7.2 - - - +
162G TYR* 3.2 45.1 - - + +
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Residues in contact with LYS 276 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273F ASP* 2.8 36.2 + - + +
275F GLN* 1.3 73.1 - - - +
277F ILE* 1.3 57.5 + - + +
279F GLN* 3.4 19.9 + - - +
280F ASN* 2.9 57.2 + - - +
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Residues in contact with ILE 277 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C VAL* 5.6 5.2 - - + -
152C LEU* 4.2 28.0 - - + -
173E VAL* 4.1 8.3 - - + -
177E GLN* 3.3 34.1 - - + +
272F PRO* 5.4 6.5 - - + -
273F ASP 3.3 19.5 - - - +
274F TYR* 2.8 35.1 + - + +
276F LYS* 1.3 77.6 - - + +
278F LEU* 1.3 63.6 + - + +
280F ASN* 3.1 11.1 + - - +
281F GLN* 3.0 26.3 + - - +
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Residues in contact with LEU 278 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C ILE* 6.4 2.0 - - + -
148C VAL* 3.9 21.1 - - + -
151C LYS* 3.4 45.8 - - + +
152C LEU* 6.6 0.4 - - + -
274F TYR* 3.0 35.0 + - + +
275F GLN* 3.1 3.1 + - - +
277F ILE* 1.3 78.2 - - + +
279F GLN* 1.3 62.4 + - - +
281F GLN* 3.2 13.1 + - + +
282F SER* 3.0 20.6 + - - -
161G LYS* 6.2 1.8 - - + -
162G TYR* 3.4 48.3 - - + +
163G ASP 5.6 0.2 - - - +
164G PRO* 5.7 1.1 - - + -
165G ASP* 4.3 4.2 - - - +
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Residues in contact with GLN 279 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275F GLN* 2.9 21.8 + - - +
276F LYS* 3.5 24.5 - - - +
277F ILE 3.2 0.2 - - - -
278F LEU* 1.3 76.4 - - - +
280F ASN* 1.3 61.0 + - - +
282F SER* 2.9 23.5 + - - -
283F LYS* 3.0 14.3 + - - +
162G TYR* 3.3 35.5 + - + +
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Residues in contact with ASN 280 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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276F LYS* 2.9 40.9 + - - +
277F ILE* 3.1 12.3 + - - +
279F GLN* 1.3 79.2 + - - +
281F GLN* 1.3 63.7 + - - +
283F LYS* 3.2 33.8 + - - +
284F VAL* 2.9 32.9 + - + +
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Residues in contact with GLN 281 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151C LYS* 5.7 7.9 - - + +
152C LEU* 3.5 28.0 - - + +
155C THR* 3.4 30.8 + - + +
177E GLN* 5.0 5.5 - - - +
180E VAL* 3.3 30.3 - - - +
277F ILE* 3.0 21.7 + - - +
278F LEU* 3.3 14.1 - - + +
280F ASN* 1.3 79.8 + - - +
282F SER* 1.3 65.9 + - - +
284F VAL* 2.9 19.6 + - - +
285F PHE* 3.0 21.5 + - + -
165G ASP* 4.8 4.7 - - - +
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Residues in contact with SER 282 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278F LEU 3.0 9.7 + - - -
279F GLN* 2.9 16.4 + - - -
281F GLN* 1.3 76.0 - - - +
283F LYS* 1.3 58.0 + - - +
285F PHE* 3.9 7.7 + - - +
286F ASP* 3.6 22.4 + - - +
162G TYR* 5.1 7.4 - - - -
165G ASP* 3.3 24.5 + - - +
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Residues in contact with LYS 283 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279F GLN 3.0 8.8 + - - +
280F ASN* 3.2 46.5 + - - +
282F SER* 1.3 75.0 - - - +
284F VAL* 1.3 66.9 + - + +
285F PHE 3.2 0.7 - - - -
286F ASP* 3.1 14.0 + - + +
287F CYS* 2.9 22.4 + - - +
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Residues in contact with VAL 284 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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155C THR* 6.0 1.1 - - - -
159C PHE* 4.5 15.3 - - + -
180E VAL* 4.6 20.0 - - + -
181E GLN* 6.1 0.4 - - - -
184E GLN* 3.2 44.7 + - + +
280F ASN* 2.9 25.0 + - + +
281F GLN* 2.9 14.9 + - - +
283F LYS* 1.3 77.1 - - + +
285F PHE* 1.3 75.3 + - + +
287F CYS* 3.0 4.9 + - - +
288F MET* 3.0 21.7 + - + +
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Residues in contact with PHE 285 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C GLN* 4.8 4.9 - - - -
155C THR* 3.6 35.4 - - + -
158C PHE* 4.1 23.8 - + - -
159C PHE* 5.8 1.3 - + - -
281F GLN* 3.0 24.4 + - + +
282F SER* 4.0 8.7 - - - +
284F VAL* 1.3 85.2 - - + +
286F ASP* 1.3 59.6 + - - +
288F MET* 3.5 6.1 + - - +
289F GLU* 2.9 27.9 + - - +
165G ASP* 5.8 7.0 - - - -
166G PRO 5.4 2.2 - - - -
169G HIS* 3.3 38.5 + + + +
170G MET* 3.6 41.7 - - + -
173G LEU* 5.5 3.1 - - + +
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Residues in contact with ASP 286 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282F SER* 3.6 17.1 + - - +
283F LYS* 3.1 15.3 + - + +
285F PHE* 1.3 77.3 - - - +
287F CYS* 1.3 65.9 + - - +
289F GLU* 2.9 18.4 + - - +
290F LEU* 3.0 20.0 + - + +
169G HIS* 5.4 3.6 + - - -
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Residues in contact with CYS 287 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184E GLN* 3.6 17.9 - - - +
188E GLN* 3.6 40.4 - - - -
283F LYS 2.9 11.8 + - - +
284F VAL 3.0 8.7 + - - +
286F ASP* 1.3 76.2 - - - +
288F MET* 1.3 60.9 + - - +
290F LEU* 3.3 15.1 - - - +
291F VAL* 3.0 29.5 + - - +
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Residues in contact with MET 288 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C PHE* 4.5 5.6 - - + -
159C PHE* 3.3 42.6 - - + -
162C LEU* 3.6 26.0 - - + -
184E GLN* 4.6 11.7 - - + +
187E TRP* 3.7 37.7 - - + -
188E GLN* 6.0 0.4 - - + -
284F VAL* 3.0 17.0 + - + +
285F PHE* 4.0 6.3 - - - +
287F CYS* 1.3 76.8 - - - +
289F GLU* 1.3 63.9 + - - +
291F VAL* 3.2 16.3 + - + +
292F MET* 2.9 33.8 + - + +
173G LEU* 4.9 9.6 - - + -
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Residues in contact with GLU 289 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285F PHE 2.9 14.3 + - - +
286F ASP* 2.9 16.2 + - - +
288F MET* 1.3 77.0 - - - +
290F LEU* 1.3 58.5 + - + +
292F MET* 3.2 3.6 + - - +
293F ASP* 2.9 35.1 + - - +
169G HIS* 4.1 18.7 - - + +
172G ASN* 4.8 2.3 - - - +
173G LEU* 3.3 26.0 - - - +
176G ARG* 3.3 24.7 + - - +
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Residues in contact with LEU 290 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286F ASP* 3.0 31.9 + - + +
287F CYS* 3.3 20.9 - - - +
289F GLU* 1.3 75.5 - - + +
291F VAL* 1.3 66.6 + - + +
293F ASP* 3.5 14.1 - - + +
294F GLU* 2.9 24.4 + - - +
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Residues in contact with VAL 291 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187E TRP* 3.8 24.0 - - + +
188E GLN* 4.3 26.9 - - + +
190E LEU* 5.3 4.9 - - + -
191E HIS* 6.4 1.6 - - + -
194E GLN* 4.4 4.3 + - - +
287F CYS* 3.0 27.3 + - - +
288F MET* 3.2 24.9 + - + +
290F LEU* 1.3 79.7 - - + +
292F MET* 1.3 62.4 + - + +
294F GLU* 3.2 15.4 + - - +
295F LEU* 3.0 26.6 + - + +
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Residues in contact with MET 292 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C LEU* 5.0 5.8 - - - -
174C PHE* 5.8 1.6 - - + -
187E TRP* 5.4 7.6 - - + -
288F MET* 2.9 26.5 + - + +
289F GLU 3.8 4.5 - - - +
291F VAL* 1.3 76.0 - - + +
293F ASP* 1.3 61.5 + - - +
295F LEU* 3.5 16.5 - - + +
296F GLN* 2.9 30.7 + - - +
173G LEU* 3.8 32.8 - - + +
176G ARG* 3.5 43.3 - - + +
177G GLY* 3.6 19.1 - - - -
180G VAL* 4.1 20.0 - - + -
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Residues in contact with ASP 293 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289F GLU* 2.9 23.1 + - - +
290F LEU* 3.5 17.9 - - + +
291F VAL 3.2 0.2 - - - -
292F MET* 1.3 74.6 - - - +
294F GLU* 1.3 65.6 + - - +
296F GLN* 3.3 15.5 + - - +
297F GLY* 2.9 18.9 + - - -
176G ARG* 2.4 35.2 + - - -
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Residues in contact with GLU 294 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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191E HIS* 2.8 40.9 + - - +
194E GLN* 3.1 39.4 + - - +
290F LEU 2.9 12.0 + - - +
291F VAL* 3.6 16.3 - - - +
293F ASP* 1.3 75.6 - - - +
295F LEU* 1.3 56.7 + - - +
297F GLY* 3.1 3.5 + - - +
298F SER* 2.9 27.4 + - - +
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Residues in contact with LEU 295 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174C PHE* 3.6 38.4 - - + -
178C LEU* 4.3 18.2 - - + -
187E TRP* 5.1 1.6 - - + -
190E LEU* 4.6 10.8 - - + -
194E GLN* 3.0 37.8 + - + +
291F VAL* 3.0 16.7 + - + +
292F MET* 3.5 21.5 - - + +
293F ASP 3.2 0.2 - - - -
294F GLU* 1.3 76.1 - - - +
296F GLN* 1.3 58.5 + - - +
298F SER* 3.0 20.6 + - - -
299F VAL* 3.0 20.2 + - + +
180G VAL* 3.7 17.5 - - + -
184G ILE* 5.8 2.5 - - + -
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Residues in contact with GLN 296 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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292F MET 2.9 14.2 + - - +
293F ASP* 3.4 25.9 + - - +
295F LEU* 1.3 74.7 - - - +
297F GLY* 1.3 58.1 + - - +
299F VAL* 3.1 25.8 - - + +
300F LYS* 3.8 12.1 + - - +
176G ARG* 3.6 29.8 - - - +
179G THR* 5.2 1.0 + - - -
180G VAL* 3.6 20.4 - - + +
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Residues in contact with GLY 297 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293F ASP 2.9 13.9 + - - -
294F GLU* 3.1 4.9 + - - -
295F LEU 3.0 0.4 - - - -
296F GLN* 1.3 76.8 - - - +
298F SER* 1.3 64.7 + - - +
299F VAL 3.1 0.2 - - - -
300F LYS* 3.0 10.5 + - - +
301F GLN* 3.0 21.6 + - - +
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Residues in contact with SER 298 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194E GLN* 3.0 41.5 + - - +
197E LEU* 4.1 16.7 - - - +
198E VAL* 4.1 13.3 - - - +
294F GLU* 2.9 9.4 + - - +
295F LEU* 3.4 5.8 - - - -
297F GLY* 1.3 75.8 - - - +
299F VAL* 1.3 63.2 + - - +
301F GLN* 3.4 10.3 + - - +
302F LEU* 3.0 22.7 + - - +
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Residues in contact with VAL 299 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295F LEU* 3.0 16.9 + - + +
296F GLN* 3.1 30.3 - - + +
298F SER* 1.3 77.1 - - - +
300F LYS* 1.3 64.6 + - + +
302F LEU* 3.1 12.9 + - + +
303F GLN* 2.9 29.0 + - - +
180G VAL* 4.1 11.2 - - + -
183G GLU* 3.3 34.0 - - + +
184G ILE* 3.7 29.6 - - + -
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Residues in contact with LYS 300 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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296F GLN 3.9 12.6 - - - +
297F GLY* 3.0 10.2 + - - +
299F VAL* 1.3 83.2 - - + +
301F GLN* 1.3 65.5 + - - +
303F GLN* 3.1 6.6 + - + +
304F ALA* 3.0 27.0 + - - +
183G GLU* 5.3 4.0 - - - +
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Residues in contact with GLN 301 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197E LEU* 5.0 0.9 - - + -
198E VAL* 4.5 24.4 - - + +
201E LEU* 3.6 39.4 + - + +
202E ARG* 4.4 25.5 + - - +
297F GLY 3.0 12.5 + - - +
298F SER* 3.6 13.0 - - - +
300F LYS* 1.3 75.5 - - - +
302F LEU* 1.3 60.9 + - - +
304F ALA* 4.1 6.2 + - - +
305F PHE* 3.8 9.9 + - - +
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Residues in contact with LEU 302 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181C LEU* 3.8 31.6 - - + -
185C SER* 4.5 8.3 - - - +
197E LEU* 5.0 4.9 - - + -
201E LEU* 3.8 18.6 - - + +
298F SER 3.0 13.6 + - - +
299F VAL* 3.3 13.0 - - + +
300F LYS 3.0 0.2 - - - -
301F GLN* 1.3 77.9 - - - +
303F GLN* 1.3 60.5 + - - +
305F PHE* 2.8 26.0 + - + +
306F MET* 2.9 29.1 + - + -
184G ILE* 5.9 2.9 - - + -
187G ALA* 3.5 31.6 - - + -
191G LEU* 4.4 13.2 - - + -
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Residues in contact with GLN 303 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299F VAL 2.9 18.2 + - - +
300F LYS* 3.1 6.7 + - - +
302F LEU* 1.3 70.2 - - + +
304F ALA* 1.3 60.1 + - - +
306F MET* 3.2 34.0 - - - +
307F ASP* 3.0 60.9 + - - +
183G GLU* 5.3 14.3 - - - +
186G GLU* 5.6 4.7 - - - +
187G ALA* 4.8 4.3 - - - +
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Residues in contact with ALA 304 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300F LYS 3.0 15.7 + - - +
301F GLN* 4.1 7.0 - - - +
303F GLN* 1.3 77.5 - - - +
305F PHE* 1.3 55.8 + - - +
307F ASP* 3.9 4.1 - - - +
308F GLU* 2.9 32.7 + - - +
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Residues in contact with PHE 305 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185C SER* 3.8 19.3 - - - -
188C LEU* 3.5 36.1 - - + -
189C GLN* 3.0 36.1 - - + -
192C ARG* 3.2 24.0 - - - -
201E LEU* 3.9 30.3 - - + +
301F GLN 3.8 9.1 + - - +
302F LEU* 2.8 19.7 + - + +
304F ALA* 1.3 75.9 - - - +
306F MET* 1.3 57.3 + - + +
308F GLU* 3.4 16.6 - - - +
309F SER* 2.4 39.3 + - - -
191G LEU* 5.6 2.7 - - + -
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Residues in contact with MET 306 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C LEU* 6.4 0.7 - - + -
302F LEU* 2.9 29.0 + - + +
303F GLN* 3.2 36.8 - - - +
304F ALA 3.3 0.2 - - - -
305F PHE* 1.3 76.7 - - + +
307F ASP* 1.3 60.4 + - - +
309F SER* 3.1 7.6 + - - -
310F THR* 2.9 27.6 + - - +
187G ALA* 3.8 21.5 - - + +
190G SER* 3.2 30.3 - - - +
191G LEU* 3.9 33.0 - - + -
194G LEU* 3.4 15.3 - - + +
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Residues in contact with ASP 307 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303F GLN* 3.0 48.2 + - - +
304F ALA* 3.9 4.1 - - - +
306F MET* 1.3 74.7 - - - +
308F GLU* 1.3 63.5 + - - +
310F THR* 3.1 14.7 - - + +
311F GLN* 3.0 26.1 + - - +
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Residues in contact with GLU 308 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192C ARG* 3.3 25.9 + - - +
304F ALA 2.9 16.7 + - - +
305F PHE* 3.4 24.2 - - - +
307F ASP* 1.3 75.7 - - - +
309F SER* 1.3 60.4 + - - +
311F GLN* 3.3 21.2 + - - +
312F CYS* 2.9 32.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 309 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C LEU* 3.7 19.2 - - - +
192C ARG* 2.3 34.1 + - - +
305F PHE* 2.4 25.5 + - - -
306F MET* 3.3 6.3 - - - -
307F ASP 3.1 0.4 - - - -
308F GLU* 1.3 74.9 - - - +
310F THR* 1.3 61.4 + - - +
312F CYS* 3.8 0.4 - - - -
313F PHE* 2.9 39.9 + - - +
194G LEU* 3.6 16.4 - - - -
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Residues in contact with THR 310 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306F MET 2.9 15.3 + - - +
307F ASP* 3.1 21.1 - - - +
309F SER* 1.3 76.0 - - - +
311F GLN* 1.3 63.2 + - + +
313F PHE* 3.4 1.9 + - - +
314F GLN* 3.0 28.4 + - - +
194G LEU* 3.8 16.3 - - - +
197G GLN* 3.9 24.8 + - - +
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Residues in contact with GLN 311 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307F ASP 3.0 22.3 + - - +
308F GLU* 3.3 23.3 + - - +
310F THR* 1.3 80.4 - - + +
312F CYS* 1.3 76.5 + - - +
314F GLN* 3.0 22.9 - - + +
315F LYS* 2.9 50.9 + - + +
----------------------------------------------------------
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Residues in contact with CYS 312 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192C ARG* 4.6 15.7 - - - +
195C VAL* 5.4 0.7 - - - +
196C GLU* 3.3 38.1 - - - +
308F GLU 2.9 20.4 + - - +
309F SER 4.1 2.0 - - - +
311F GLN* 1.3 88.4 + - - +
313F PHE* 1.3 67.7 + - + +
315F LYS* 3.6 19.5 + - - +
316F VAL* 4.5 5.2 - - - +
----------------------------------------------------------
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Residues in contact with PHE 313 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C LEU* 5.2 7.2 - - + -
191C ILE* 3.9 9.4 - - + -
192C ARG* 3.8 40.6 - - + -
195C VAL* 3.8 26.5 - - + -
196C GLU* 5.6 0.9 - - - -
309F SER* 2.9 23.1 + - - +
310F THR 3.9 0.9 - - - +
311F GLN 3.1 0.2 - - - -
312F CYS* 1.3 88.0 - - + +
314F GLN* 1.3 59.0 + - - +
315F LYS 3.3 0.4 - - - -
316F VAL* 3.2 11.8 - - - +
194G LEU* 3.7 11.4 - - + -
197G GLN* 3.9 37.9 - - + +
198G GLY* 3.4 26.2 - - - -
201G PHE* 3.0 33.0 - + + -
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Residues in contact with GLN 314 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310F THR 3.0 17.1 + - - +
311F GLN* 3.0 26.5 + - - +
313F PHE* 1.3 72.6 - - - +
315F LYS* 1.3 70.9 + - - +
316F VAL* 3.0 12.7 + - - +
317F SER* 3.7 17.2 + - - -
----------------------------------------------------------
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Residues in contact with LYS 315 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311F GLN* 2.9 42.3 + - - +
312F CYS* 3.6 19.5 - - - +
313F PHE 3.3 0.8 - - - -
314F GLN* 1.3 89.2 - - - +
316F VAL* 1.3 59.4 + - - +
317F SER* 3.2 8.2 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il