Contacts of the helix formed by residues 31 - 41 (chain Z) in PDB entry 5V04
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 31 (chain Z).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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29Z VAL* 3.0 11.1 + - - +
30Z ASP* 1.3 70.5 - - - +
32Z TYR* 1.3 57.4 + - - +
33Z CYS 3.2 0.7 - - - -
34Z TRP* 3.2 18.9 + - + +
35Z LEU* 2.9 29.9 + - + +
59Z CYS* 4.7 4.9 - - + -
75Z LEU* 3.6 24.2 - - + +
76Z VAL 3.0 33.4 + - - -
77Z PHE* 3.7 28.6 - - + -
133Z VAL* 4.3 9.9 - - + -
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Residues in contact with TYR 32 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1B T 3.2 49.1 + - - -
2B C 4.3 12.8 - - - -
30Z ASP* 2.9 17.3 + - - +
31Z THR* 1.3 78.4 - - - +
33Z CYS* 1.3 61.7 + - + +
35Z LEU* 3.3 8.8 + - + +
36Z HIS* 2.9 45.6 + + + +
76Z VAL 4.6 1.4 + - - -
77Z PHE* 5.6 2.1 - - - +
78Z ASP* 4.2 22.4 - - + +
123Z ILE 5.4 1.7 + - - -
125Z ILE* 3.6 38.1 + - + +
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Residues in contact with CYS 33 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2B C 6.5 0.7 - - - -
29Z VAL* 5.4 0.2 - - - -
30Z ASP* 3.2 23.1 + - + +
31Z THR 3.2 0.8 - - - -
32Z TYR* 1.3 82.9 - - + +
34Z TRP* 1.3 90.5 + - - +
36Z HIS* 3.4 3.7 + - - +
37Z LYS* 2.9 39.2 + - + +
168Z ILE* 5.0 2.2 - - - -
169Z THR* 4.5 13.2 - - - +
170Z GLU* 3.6 38.8 - - + +
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Residues in contact with TRP 34 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29Z VAL* 3.5 36.1 - - + -
31Z THR* 3.2 17.4 + - + +
33Z CYS* 1.3 93.3 - - - +
35Z LEU* 1.3 60.5 + - - +
37Z LYS* 4.1 18.8 - - - +
38Z GLY* 2.9 25.1 + - - -
58Z PHE* 3.4 13.2 - - + -
59Z CYS* 3.8 25.4 - - + -
62Z PHE* 3.6 44.2 - + + -
63Z VAL* 4.1 17.7 - - + -
66Z LEU* 3.6 24.9 - - + -
75Z LEU* 4.9 4.7 - - + -
168Z ILE* 4.0 11.7 - - + +
170Z GLU* 5.8 0.4 + - - -
186Z MET* 3.7 26.0 + - + +
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Residues in contact with LEU 35 (chain Z).
Click here for Legend to table.
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Specific contacts
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