Contacts of the helix formed by residues 441 - 505 (chain B) in PDB entry 5VLR
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 441 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440B ASP* 1.3 79.8 + - - +
442B ILE* 1.3 70.1 + - - +
443B GLU* 3.1 17.4 + - - +
444B ALA* 3.1 30.3 + - + +
445B VAL* 3.2 19.8 + - - +
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Residues in contact with ILE 442 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440B ASP 3.8 0.6 + - - +
441B ASN* 1.3 76.3 - - - +
443B GLU* 1.3 62.7 + - - +
445B VAL 3.5 0.2 + - - -
446B GLY* 3.1 20.1 + - - -
583B TRP* 4.5 6.5 - - + -
584B LEU* 3.7 10.9 - - + +
587B LYS* 4.5 24.5 - - + +
589B VAL* 3.5 34.1 - - + -
593B LYS* 5.0 7.6 - - + -
597B TRP* 4.0 12.4 - - + -
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Residues in contact with GLU 443 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B ASN* 3.1 18.4 + - - +
442B ILE* 1.3 78.4 - - - +
444B ALA* 1.3 60.2 + - - +
446B GLY* 3.5 0.9 + - - -
447B LYS* 3.3 39.7 + - + +
593B LYS* 3.6 28.4 + - - -
597B TRP* 3.7 22.6 + - - -
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Residues in contact with ALA 444 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440B ASP* 4.0 20.2 - - + +
441B ASN* 3.1 24.4 + - + +
443B GLU* 1.3 76.3 - - - +
445B VAL* 1.4 59.6 + - - +
447B LYS* 3.7 7.1 + - - +
448B LYS* 3.6 27.0 + - - +
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Residues in contact with VAL 445 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437B VAL* 5.5 3.4 - - + -
438B LYS 4.2 9.0 - - - +
440B ASP* 3.7 20.0 - - + -
441B ASN 3.2 15.9 + - - +
442B ILE 4.2 1.8 - - - +
444B ALA* 1.4 72.3 - - - +
446B GLY* 1.3 59.1 + - - +
447B LYS 3.3 0.9 - - - -
448B LYS* 3.5 10.5 + - - +
449B LEU* 3.0 23.2 + - - +
580B TYR* 3.5 30.7 - - + +
583B TRP* 3.6 46.2 - - + -
584B LEU* 4.2 7.8 - - + +
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Residues in contact with GLY 446 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442B ILE 3.1 13.4 + - - -
443B GLU 3.5 1.5 + - - -
444B ALA 3.4 0.2 - - - -
445B VAL* 1.3 77.2 - - - +
447B LYS* 1.3 57.6 + - - +
449B LEU* 3.7 2.3 + - - +
450B HIS 3.2 14.6 + - - -
584B LEU* 4.1 4.9 - - - +
597B TRP* 3.1 57.9 - - - +
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Residues in contact with LYS 447 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443B GLU* 3.3 31.3 + - + +
444B ALA* 3.9 8.3 - - - +
445B VAL 3.3 0.4 - - - -
446B GLY* 1.3 75.2 - - - +
448B LYS* 1.3 61.4 + - + +
449B LEU 3.3 0.2 - - - -
450B HIS* 3.2 8.1 + - - +
451B GLU* 2.8 41.5 + - - +
597B TRP* 5.1 2.7 - - + +
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Residues in contact with LYS 448 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437B VAL* 5.6 0.4 - - - +
438B LYS* 3.8 22.4 + - - +
440B ASP* 3.8 21.9 + - - -
444B ALA* 3.6 19.2 + - - +
445B VAL* 3.5 12.1 + - - +
446B GLY 3.5 0.2 - - - -
447B LYS* 1.3 75.6 - - + +
449B LEU* 1.4 56.6 + - - +
451B GLU* 3.9 13.0 - - - +
452B TYR* 2.9 47.2 + - + -
580B TYR* 3.0 46.7 + - + +
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Residues in contact with LEU 449 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B VAL 3.0 16.7 + - - +
446B GLY* 3.7 5.2 - - - +
447B LYS 3.3 0.4 - - - -
448B LYS* 1.4 76.9 - - - +
450B HIS* 1.3 61.0 + - - +
452B TYR* 4.3 3.3 - - - +
453B ASN* 3.2 25.8 + - - +
577B ARG* 3.3 39.0 - - + +
580B TYR* 3.9 11.4 - - + -
581B LEU* 3.6 34.8 - - + +
584B LEU* 4.1 18.4 - - + -
594B LEU* 4.5 3.1 - - + +
597B TRP* 3.7 27.3 - - + +
598B LEU* 4.3 12.6 - - + -
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Residues in contact with HIS 450 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446B GLY 3.2 13.9 + - - +
447B LYS* 3.2 11.7 + - - +
449B LEU* 1.3 79.3 - - - +
451B GLU* 1.4 63.4 + - + +
453B ASN* 3.5 2.6 + - - +
454B THR* 3.1 42.3 + - + -
596B GLU 3.9 10.2 + - - -
597B TRP* 2.7 39.6 + + + +
598B LEU 5.4 0.2 - - - -
599B GLY* 4.8 9.0 - - - -
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Residues in contact with GLU 451 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447B LYS* 2.8 35.4 + - - +
448B LYS* 3.6 13.2 - - - +
450B HIS* 1.4 75.9 - - + +
452B TYR* 1.4 58.6 + - + +
454B THR* 3.2 6.3 + - - +
455B GLN* 3.0 45.9 + - - +
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Residues in contact with TYR 452 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448B LYS* 2.9 41.1 + - + +
449B LEU* 4.3 3.1 - - - +
451B GLU* 1.4 71.0 - - + +
453B ASN* 1.3 55.4 + - - +
455B GLN* 3.5 16.9 + - - +
456B PHE* 2.8 33.3 + - - +
573B LEU* 3.8 26.6 - - + +
576B THR* 3.7 33.9 - - + +
577B ARG* 4.5 17.9 - - + +
580B TYR* 3.8 26.8 + + - -
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Residues in contact with ASN 453 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B LEU 3.2 18.9 + - - +
450B HIS* 3.8 4.5 + - - +
452B TYR* 1.3 74.0 - - - +
454B THR* 1.3 60.3 + - - +
456B PHE* 3.1 3.3 + - - +
457B GLN* 2.9 51.2 + - - +
577B ARG* 3.1 40.3 + - + +
597B TRP 4.5 1.4 + - - -
598B LEU* 2.8 45.5 + - + +
599B GLY* 5.1 0.2 - - - -
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Residues in contact with THR 454 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450B HIS* 3.1 35.7 + - + -
451B GLU* 3.4 7.0 - - - +
453B ASN* 1.3 78.5 + - - +
455B GLN* 1.3 66.7 + - + +
457B GLN* 3.6 4.5 + - - +
458B GLU* 3.1 34.3 + - + +
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Residues in contact with GLN 455 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451B GLU* 3.0 34.7 + - + +
452B TYR* 3.6 19.5 - - - +
454B THR* 1.3 78.2 - - + +
456B PHE* 1.4 56.3 + - - +
458B GLU* 3.9 5.8 - - - +
459B LYS* 3.2 28.2 + - - +
573B LEU* 3.5 25.7 - - + +
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Residues in contact with PHE 456 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B TYR 2.8 18.3 + - - +
453B ASN* 3.1 6.9 + - - +
455B GLN* 1.4 72.9 - - - +
457B GLN* 1.3 66.7 + - + +
459B LYS* 3.3 2.8 + - - +
460B SER* 2.8 49.2 + - - -
570B LEU* 3.6 34.3 - - + -
573B LEU* 4.0 19.0 - - + +
574B ARG* 3.5 51.6 - - + -
577B ARG* 3.9 28.3 - - + -
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Residues in contact with GLN 457 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453B ASN* 2.9 36.9 + - - +
454B THR* 4.0 4.3 - - - +
456B PHE* 1.3 83.8 - - + +
458B GLU* 1.4 56.4 + - + +
460B SER* 3.5 7.6 - - - -
461B ARG* 2.9 37.0 + - - +
577B ARG* 5.6 0.4 - - - +
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Residues in contact with GLU 458 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454B THR* 3.1 27.6 + - + +
455B GLN* 3.9 7.0 - - - +
457B GLN* 1.4 72.3 - - + +
459B LYS* 1.4 58.6 + - - +
461B ARG* 2.9 14.8 + - - +
462B GLU* 2.9 27.9 + - - +
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Residues in contact with LYS 459 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455B GLN 3.2 17.5 + - - +
456B PHE 3.8 2.7 - - - +
458B GLU* 1.4 76.5 - - - +
460B SER* 1.4 56.1 + - - +
462B GLU* 3.4 11.0 - - + +
463B TYR* 3.0 28.4 + - - +
566B ILE* 4.3 19.2 - - + +
569B ASP* 4.6 8.1 - - + +
570B LEU* 3.8 22.6 - - + +
573B LEU* 3.9 17.9 - - + -
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Residues in contact with SER 460 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 2.8 33.1 + - - -
457B GLN* 3.5 10.3 - - - -
459B LYS* 1.4 75.4 - - - +
461B ARG* 1.4 55.4 + - - +
463B TYR* 3.5 1.7 + - - +
464B ASP* 3.0 43.4 + - - +
570B LEU* 3.5 20.7 - - - +
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Residues in contact with ARG 461 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457B GLN* 2.9 20.7 + - - +
458B GLU* 2.9 15.7 + - - +
460B SER* 1.4 70.0 - - - +
462B GLU* 1.4 64.4 + - - +
464B ASP* 3.4 6.8 + - - +
465B ARG* 3.1 31.7 + - + +
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Residues in contact with GLU 462 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458B GLU 2.9 11.3 + - - +
459B LYS* 3.4 15.3 - - + +
461B ARG* 1.4 76.1 - - - +
463B TYR* 1.4 61.6 + - - +
465B ARG* 3.4 6.0 + - - +
466B LEU* 3.1 28.5 + - + +
566B ILE* 3.9 19.3 - - + -
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Residues in contact with TYR 463 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A PRO* 6.0 0.7 - - - +
444A SER 4.1 0.7 + - - -
445A VAL* 3.7 14.5 - - + +
446A PRO* 3.2 30.9 - - + +
459B LYS 3.0 14.1 + - - +
460B SER 3.8 3.1 - - - +
461B ARG 3.4 0.4 - - - -
462B GLU* 1.4 76.2 - - - +
464B ASP* 1.3 68.2 + - - +
466B LEU* 3.1 5.3 + - - +
467B TYR* 3.0 53.9 + + + +
563B MET* 4.0 27.5 - - + +
566B ILE* 3.7 25.0 - - + +
567B LYS* 3.9 29.6 - - + -
570B LEU* 3.9 20.6 - - + -
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Residues in contact with ASP 464 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460B SER* 3.0 32.6 + - - +
461B ARG* 3.4 8.3 + - + +
463B TYR* 1.3 85.6 - - - +
465B ARG* 1.4 57.5 + - + +
467B TYR* 3.4 7.0 + - - +
468B GLU* 3.2 26.9 + - - +
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Residues in contact with ARG 465 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461B ARG* 3.1 21.1 + - + +
462B GLU* 3.7 6.3 - - - +
463B TYR 3.2 0.2 - - - -
464B ASP* 1.4 76.7 - - + +
466B LEU* 1.4 54.2 + - - +
467B TYR 3.2 2.0 - - - -
468B GLU* 3.2 29.8 + - - +
469B ASP* 3.1 18.3 - - - +
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Residues in contact with LEU 466 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462B GLU* 3.1 16.9 + - + +
463B TYR* 3.1 10.3 + - - +
465B ARG* 1.4 73.1 - - - +
467B TYR* 1.4 57.0 + - - +
469B ASP* 4.0 12.3 - - - +
470B TYR* 3.3 21.5 + - - +
559B ILE* 3.5 44.4 - - + +
562B ARG* 3.8 52.9 - - + +
563B MET* 3.6 13.3 - - + +
566B ILE* 4.5 12.6 - - + -
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Residues in contact with TYR 467 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A PRO* 4.8 12.2 - - + +
445A VAL* 3.8 26.7 - - + +
463B TYR* 3.0 39.1 + + + +
464B ASP* 3.8 7.2 - - - +
465B ARG 3.2 0.2 - - - -
466B LEU* 1.4 74.6 - - - +
468B GLU* 1.3 60.2 + - - +
469B ASP 3.3 0.4 - - - -
470B TYR* 3.7 25.1 - + - -
471B THR* 3.0 50.3 + - - -
563B MET* 4.2 12.1 - - + -
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Residues in contact with GLU 468 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464B ASP 3.2 13.8 + - - +
465B ARG* 3.3 19.1 - - - +
467B TYR* 1.3 79.4 - - - +
469B ASP* 1.4 52.8 + - - +
471B THR* 3.3 6.7 + - - +
472B ARG* 2.8 34.4 + - - +
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Residues in contact with ASP 469 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465B ARG* 3.1 17.8 + - - +
466B LEU* 4.1 12.3 - - + +
467B TYR 3.3 0.2 - - - -
468B GLU* 1.4 74.7 - - - +
470B TYR* 1.4 55.8 + - - +
472B ARG* 3.7 27.0 + - - +
473B THR* 2.7 38.6 + - - -
559B ILE* 3.7 21.3 - - + -
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Residues in contact with TYR 470 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A PRO* 3.1 40.4 - - + +
462A ASN* 4.4 5.5 + - - -
466B LEU 3.3 17.6 + - - +
467B TYR* 3.6 28.0 - + - +
468B GLU 3.4 0.4 - - - -
469B ASP* 1.4 76.6 - - - +
471B THR* 1.4 57.8 + - - +
473B THR* 3.8 1.9 - - - -
474B SER* 2.8 50.4 + - - -
556B TYR* 3.3 42.1 + + - -
559B ILE* 3.7 18.1 - - + +
560B ASP* 4.3 12.1 - - + -
563B MET* 3.6 24.2 - - + -
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Residues in contact with THR 471 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821A ARG* 5.1 14.8 - - - +
467B TYR* 3.0 38.1 + - - -
468B GLU* 3.4 6.1 - - - +
470B TYR* 1.4 78.0 - - - +
472B ARG* 1.4 62.1 + - - +
474B SER* 3.3 7.7 + - - -
475B GLN* 3.1 36.8 + - - +
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Residues in contact with ARG 472 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468B GLU 2.8 20.4 + - - +
469B ASP* 3.5 28.3 + - - +
471B THR* 1.4 72.2 - - - +
473B THR* 1.3 78.7 + - - +
475B GLN* 3.3 14.4 - - - +
476B GLU* 3.0 63.1 + - + +
552B GLN* 5.0 1.6 - - - +
555B GLU* 3.6 19.4 + - - -
559B ILE* 4.9 3.4 - - - +
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Residues in contact with THR 473 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469B ASP 2.7 19.2 + - - -
470B TYR* 4.1 2.5 - - - -
472B ARG* 1.3 97.3 + - - +
474B SER* 1.3 63.4 + - - +
476B GLU* 3.9 5.7 - - - +
477B ILE* 3.0 45.9 + - + +
552B GLN* 3.7 24.9 + - + +
555B GLU* 4.5 4.5 + - + -
556B TYR* 4.0 17.7 - - + +
559B ILE* 3.9 10.7 - - - +
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Residues in contact with SER 474 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464A ASN* 3.6 22.8 + - - +
658A PRO* 6.1 4.9 - - - -
470B TYR* 2.8 34.3 + - - -
471B THR* 3.5 8.7 - - - -
472B ARG 3.3 0.2 - - - -
473B THR* 1.3 77.0 - - - +
475B GLN* 1.4 59.2 + - - +
477B ILE* 3.8 1.7 + - - +
478B GLN* 3.5 17.3 + - - +
556B TYR* 3.6 25.8 - - - -
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Residues in contact with GLN 475 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
656A HIS* 5.7 4.3 - - - +
820A ASP* 3.8 20.9 + - - +
821A ARG* 4.5 6.4 + - - +
471B THR* 3.1 25.1 + - - +
472B ARG* 3.3 18.8 - - - +
474B SER* 1.4 74.6 - - - +
476B GLU* 1.4 60.8 + - + +
477B ILE 3.2 0.2 - - - -
478B GLN* 3.1 9.0 + - - +
479B MET* 3.0 38.9 + - + +
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Residues in contact with GLU 476 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472B ARG* 3.0 52.9 + - + +
473B THR* 3.9 2.2 - - - +
475B GLN* 1.4 77.2 - - + +
477B ILE* 1.3 55.4 + - - +
479B MET* 3.3 18.7 - - - +
480B LYS* 3.1 36.3 + - - +
552B GLN* 2.9 37.3 + - - +
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Residues in contact with ILE 477 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464A ASN* 4.0 12.6 - - - +
466A ASP* 3.6 22.9 - - - +
467A SER* 4.8 2.2 - - - -
473B THR* 3.0 27.3 + - + +
474B SER 3.8 1.6 - - - +
475B GLN 3.2 0.2 - - - -
476B GLU* 1.3 74.3 - - - +
478B GLN* 1.4 72.5 + - - +
479B MET 3.2 0.4 - - - -
480B LYS* 3.3 3.1 + - - +
481B ARG* 2.9 28.4 + - - +
549B LEU* 3.8 15.0 - - + +
552B GLN* 3.2 48.5 - - + +
553B ALA* 3.9 7.4 - - + -
556B TYR* 3.8 17.5 - - + -
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Residues in contact with GLN 478 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A PRO* 3.4 29.6 + - + +
464A ASN* 3.3 33.0 + - + +
466A ASP* 4.0 11.7 - - - +
474B SER 3.5 6.5 + - - +
475B GLN* 3.1 10.2 + - - +
477B ILE* 1.4 82.1 - - - +
479B MET* 1.4 59.5 + - - +
481B ARG* 3.8 11.2 - - - +
482B THR* 3.2 33.1 + - + +
----------------------------------------------------------
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Residues in contact with MET 479 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475B GLN* 3.0 20.6 + - + +
476B GLU* 3.3 27.8 - - - +
478B GLN* 1.4 75.1 - - - +
480B LYS* 1.4 59.2 + - + +
482B THR* 3.1 10.8 + - - -
483B ALA* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 480 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476B GLU* 3.1 14.8 + - - +
477B ILE 3.5 8.3 - - - +
479B MET* 1.4 77.9 - - + +
481B ARG* 1.3 56.6 + - - +
483B ALA* 3.2 9.4 + - - +
484B ILE* 3.0 35.2 + - - +
545B LEU* 4.3 13.1 - - + +
548B ASP* 3.6 35.4 + - - -
549B LEU* 3.8 31.2 - - + +
552B GLN* 3.3 32.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 481 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A ASP* 3.6 28.9 - - + +
477B ILE 2.9 20.0 + - - +
478B GLN* 4.0 17.0 - - - +
479B MET 3.2 0.4 - - - -
480B LYS* 1.3 76.7 - - - +
482B THR* 1.4 58.1 + - + +
484B ILE* 3.5 9.1 + - + +
485B GLU* 3.0 39.0 + - - +
549B LEU* 4.1 15.5 - - + -
----------------------------------------------------------
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Residues in contact with THR 482 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLN 4.7 10.4 + - - +
76A THR* 5.4 4.4 - - - +
77A ALA* 3.4 16.2 - - - +
127A GLU* 3.2 29.8 - - - +
478B GLN* 3.2 15.8 + - + +
479B MET* 3.1 14.6 + - - -
481B ARG* 1.4 75.4 - - + +
483B ALA* 1.4 58.2 + - - +
485B GLU* 3.5 13.8 + - - +
486B ALA* 3.0 23.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 483 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLN 5.9 0.2 - - - -
95A PHE* 3.4 25.3 - - + -
479B MET 2.9 12.9 + - - +
480B LYS* 3.4 14.6 - - - +
482B THR* 1.4 74.0 + - - +
484B ILE* 1.3 59.9 + - - +
486B ALA* 3.4 1.0 - - - +
487B PHE* 3.1 34.5 + - + -
545B LEU* 4.4 12.3 - - + -
----------------------------------------------------------
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Residues in contact with ILE 484 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480B LYS 3.0 20.9 + - - +
481B ARG* 3.8 7.6 - - - +
482B THR 3.3 0.2 - - - -
483B ALA* 1.3 73.9 - - - +
485B GLU* 1.4 64.8 + - + +
487B PHE* 3.2 8.6 + - + +
488B ASN* 3.0 22.6 + - + +
542B ARG* 4.2 23.6 + - + +
545B LEU* 4.1 21.3 - - + +
546B GLU* 4.3 32.1 - - + +
549B LEU* 3.8 28.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 485 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A ALA* 4.0 9.6 - - + +
126A HIS* 3.7 16.6 + - + -
127A GLU* 3.5 19.5 - - - +
481B ARG* 3.0 28.6 + - - +
482B THR* 3.7 15.4 - - - +
483B ALA 3.4 0.2 - - - -
484B ILE* 1.4 76.7 - - + +
486B ALA* 1.3 55.1 + - - +
488B ASN* 3.3 8.5 + - - +
489B GLU* 2.9 35.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 486 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A ILE* 3.5 15.5 - - + +
74A ASN 4.7 1.6 - - - +
75A GLN 5.0 2.0 - - - +
77A ALA* 3.5 17.2 - - + +
95A PHE* 3.6 30.5 - - + -
482B THR 3.0 17.1 + - - +
483B ALA* 3.4 8.7 - - - +
484B ILE 3.3 0.2 - - - -
485B GLU* 1.3 76.7 - - - +
487B PHE* 1.4 50.6 + - - +
489B GLU 3.5 0.2 + - - -
490B THR* 2.7 36.2 + - - -
----------------------------------------------------------
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Residues in contact with PHE 487 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A PHE* 3.3 23.8 - + - -
96A LEU* 3.7 22.0 - - + -
483B ALA* 3.1 27.0 + - + -
484B ILE* 3.2 9.2 + - - +
486B ALA* 1.4 72.7 - - - +
488B ASN* 1.3 56.6 + - - +
490B THR* 3.2 4.6 + - - -
491B ILE* 2.7 41.9 + - + +
538B ILE* 3.5 35.2 - - + -
541B SER* 3.6 30.3 - - - -
542B ARG* 3.6 29.8 - - + -
545B LEU* 4.4 15.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN 488 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484B ILE 3.0 8.7 + - - +
485B GLU* 3.4 12.8 - - - +
487B PHE* 1.3 75.5 - - - +
489B GLU* 1.4 64.4 + - - +
491B ILE* 3.9 1.3 - - - +
492B LYS* 2.9 32.9 + - + +
542B ARG* 3.3 35.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 489 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A ILE* 3.9 19.1 - - + +
77A ALA 3.5 20.4 - - - +
78A GLU* 5.3 2.6 - - - -
79A GLN* 4.5 18.4 + - + +
485B GLU* 2.9 20.9 + - + +
486B ALA 3.9 2.7 - - - +
488B ASN* 1.4 79.2 - - - +
490B THR* 1.4 63.2 + - - +
492B LYS* 3.4 29.5 + - - +
493B ILE* 3.2 26.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 490 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A ILE* 3.9 17.7 - - - +
95A PHE* 4.0 9.5 - - - +
96A LEU* 3.9 15.2 + - + +
98A VAL* 4.4 12.7 - - + +
486B ALA 2.7 22.8 + - - -
487B PHE* 3.2 8.9 + - - -
489B GLU* 1.4 72.1 - - - +
491B ILE* 1.3 63.2 + - - +
493B ILE* 3.1 14.0 + - - +
494B PHE* 3.0 37.2 + - + -
538B ILE* 3.9 21.3 - - + -
----------------------------------------------------------
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Residues in contact with ILE 491 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487B PHE 2.7 20.9 + - - +
488B ASN 4.1 2.9 - - - +
490B THR* 1.3 70.8 - - - +
492B LYS* 1.4 51.9 + - - +
494B PHE* 3.0 8.0 + - + +
495B GLU* 2.8 61.2 + - + +
535B ILE* 4.7 7.2 - - + -
538B ILE* 3.7 28.7 - - + +
539B VAL* 3.8 30.5 - - + -
542B ARG* 3.5 39.0 - - + +
----------------------------------------------------------
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Residues in contact with LYS 492 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLN* 6.1 2.0 - - - +
488B ASN* 2.9 23.0 + - + +
489B GLU* 3.4 33.9 - - - +
490B THR 3.2 0.4 - - - -
491B ILE* 1.4 73.6 - - - +
493B ILE* 1.4 50.6 + - - +
495B GLU* 3.1 13.8 + - - +
496B GLU* 2.9 44.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 493 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A LEU* 4.0 20.6 - - + +
71A THR* 5.0 8.5 - - + -
73A ILE* 5.1 6.1 - - + -
79A GLN* 3.9 33.9 - - + +
98A VAL* 4.5 11.0 - - + -
100A ARG* 5.0 11.9 - - + -
489B GLU 3.2 10.0 + - - +
490B THR* 3.1 17.2 + - - +
492B LYS* 1.4 74.8 - - - +
494B PHE* 1.4 62.5 + - + +
496B GLU* 3.6 16.2 + - - +
497B GLN* 3.2 24.4 + - - +
----------------------------------------------------------
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Residues in contact with PHE 494 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ASP* 4.2 5.8 - - + -
25A LEU* 4.0 23.3 - - + -
31A TYR* 4.7 1.3 - + - -
98A VAL* 3.5 38.6 - - + -
490B THR* 3.0 23.9 + - + +
491B ILE* 3.0 13.7 + - + +
493B ILE* 1.4 79.3 - - + +
495B GLU* 1.3 60.5 + - - +
497B GLN* 3.5 8.3 - - - +
498B CYS* 3.2 29.3 + - - -
531B LEU* 4.1 15.4 - - + +
534B ARG* 3.8 26.0 - - + -
535B ILE* 3.3 37.1 - - + +
538B ILE* 3.6 22.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU 495 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491B ILE* 2.8 38.6 + - + +
492B LYS* 3.5 9.3 - - - +
494B PHE* 1.3 76.7 - - - +
496B GLU* 1.4 63.2 + - - +
498B CYS* 3.2 11.1 + - + +
499B GLN* 3.1 21.1 + - - +
535B ILE* 5.0 12.3 - - + +
539B VAL* 5.7 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 496 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLN* 4.5 8.3 + - - -
492B LYS* 2.9 21.4 + - - +
493B ILE* 3.6 27.3 + - - +
495B GLU* 1.4 72.0 - - - +
497B GLN* 1.4 58.8 + - - +
499B GLN* 3.1 9.2 + - - +
500B THR* 2.9 32.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 497 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A LEU* 3.5 25.6 - - + +
26A LEU 3.1 26.8 + - - +
27A PRO* 5.2 0.9 - - - +
29A GLY* 3.1 15.1 + - - +
30A VAL 2.8 28.9 + - - -
31A TYR* 4.4 0.6 - - - +
100A ARG* 5.5 2.8 - - - +
493B ILE 3.2 12.1 + - - +
494B PHE* 3.5 11.4 - - - +
495B GLU 3.3 0.2 - - - -
496B GLU* 1.4 77.1 - - - +
498B CYS* 1.3 51.3 + - - +
500B THR* 3.2 9.2 + - - +
501B GLN* 2.8 35.7 + - - +
531B LEU* 3.6 25.6 - - + -
----------------------------------------------------------
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Residues in contact with CYS 498 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494B PHE 3.2 19.7 + - - -
495B GLU* 3.2 13.6 + - + +
497B GLN* 1.3 75.3 - - - +
499B GLN* 1.3 61.1 + - - +
501B GLN* 3.6 0.7 - - - +
502B GLU* 3.1 24.1 + - - +
528B TYR* 3.4 41.2 + - - +
531B LEU* 3.9 8.5 - - - -
532B LYS* 4.4 8.3 - - - -
535B ILE* 3.6 21.8 - - - -
----------------------------------------------------------
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Residues in contact with GLN 499 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495B GLU 3.1 10.7 + - - +
496B GLU* 3.1 12.1 + - - +
498B CYS* 1.3 73.9 - - - +
500B THR* 1.4 63.4 + - - +
502B GLU* 3.2 27.1 + - - +
503B ARG* 3.2 41.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 500 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PRO* 3.3 27.6 - - + +
28A THR 4.1 2.0 - - - -
29A GLY* 3.9 12.3 - - - +
496B GLU* 2.9 16.3 + - - +
497B GLN* 3.6 13.6 - - - +
499B GLN* 1.4 74.8 - - - +
501B GLN* 1.3 62.4 - - - +
503B ARG* 3.2 20.9 + - - +
504B TYR* 2.9 34.3 + - + +
----------------------------------------------------------
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Residues in contact with GLN 501 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A THR 4.3 3.8 - - - +
29A GLY* 3.9 27.5 - - - +
497B GLN 2.8 19.5 + - - +
498B CYS 3.6 5.6 - - - +
500B THR* 1.3 72.4 - - - +
502B GLU* 1.4 57.0 + - - +
505B SER* 2.9 47.9 + - - -
524B ILE* 3.8 27.5 + - + +
525B MET* 4.9 6.3 - - - -
528B TYR* 3.3 61.5 - - + +
531B LEU* 4.8 0.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 502 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498B CYS* 3.1 17.3 + - - +
499B GLN* 3.2 28.5 + - - +
501B GLN* 1.4 80.1 + - - +
503B ARG* 1.3 61.3 + - - +
505B SER* 3.9 8.5 + - - -
506B LYS* 4.7 5.7 + - - +
528B TYR* 2.7 28.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 503 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499B GLN* 3.2 28.8 + - - +
500B THR* 4.0 27.1 + - - +
502B GLU* 1.3 76.8 - - - +
504B TYR* 1.3 64.8 + - - +
505B SER 2.9 8.7 + - - -
506B LYS* 3.1 18.4 + - + +
507B GLU* 3.3 14.3 - - - +
----------------------------------------------------------
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Residues in contact with TYR 504 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PRO 4.8 4.3 - - - -
28A THR* 3.3 49.9 - - + +
58A LEU* 3.8 16.6 - - + -
61A MET* 3.0 31.2 + - - +
500B THR* 2.9 22.3 + - + +
503B ARG* 1.3 80.7 - - - +
505B SER* 1.3 59.2 + - - +
507B GLU* 4.1 8.0 - - - +
508B TYR* 3.3 44.0 + + - -
----------------------------------------------------------
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Residues in contact with SER 505 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A THR 5.3 0.6 + - - -
58A LEU* 5.7 2.9 - - - -
501B GLN* 2.9 39.3 + - - -
502B GLU* 3.9 10.7 + - - -
503B ARG 2.9 0.6 + - - -
504B TYR* 1.3 77.5 - - - +
506B LYS* 1.4 57.3 + - - +
508B TYR* 2.8 31.6 + - - +
509B ILE* 2.9 29.9 + - - +
524B ILE* 4.5 7.9 - - - -
525B MET* 6.0 1.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il