Contacts of the helix formed by residues 69 - 134 (chain I) in PDB entry 6FF7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 69 (chain I).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67I SER 3.5 6.9 + - - -
68I ALA* 1.3 75.1 - - - +
70I SER* 1.3 65.1 + - - +
71I ILE* 3.5 7.0 - - - -
72I PRO* 4.1 11.5 - - - +
73I ALA* 3.5 21.8 + - - +
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Residues in contact with SER 70 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76H LYS 6.4 0.2 - - - -
77H ALA* 6.1 1.6 - - - -
80H ASP* 4.2 25.1 - - - -
69I THR* 1.3 74.8 - - - +
71I ILE* 1.3 60.0 + - - +
73I ALA* 3.7 3.9 - - - +
74I ILE* 2.9 35.5 + - - +
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Residues in contact with ILE 71 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69I THR* 3.5 4.3 - - - -
70I SER* 1.3 76.0 - - - +
72I PRO* 1.3 61.0 - - - +
74I ILE* 5.0 1.6 - - - -
75I LEU* 2.9 38.0 + - + +
84K MET* 4.5 23.6 - - + +
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Residues in contact with PRO 72 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69G THR* 4.8 3.2 - - - -
67I SER 5.5 3.6 - - - +
68I ALA* 6.0 0.7 - - - -
69I THR* 4.1 15.8 - - - +
70I SER 3.5 0.2 - - - -
71I ILE* 1.3 77.0 - - - +
73I ALA* 1.3 58.2 + - - +
76I LYS* 2.8 36.8 + - + +
77I ALA* 2.8 11.1 + - - +
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Residues in contact with ALA 73 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69G THR* 5.3 3.4 - - - -
74G ILE* 4.3 24.0 - - + -
69I THR 3.5 18.1 + - - +
70I SER* 3.5 5.1 + - - +
71I ILE 3.3 0.4 - - - -
72I PRO* 1.3 77.5 - - - +
74I ILE* 1.3 64.6 + - - +
77I ALA* 2.5 34.8 + - - +
78I LEU 3.5 0.3 + - - -
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Residues in contact with ILE 74 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72H PRO* 5.7 3.8 - - - +
73H ALA* 4.9 16.8 - - + +
76H LYS* 4.6 22.2 - - + -
77H ALA* 5.4 5.6 - - + +
70I SER* 2.9 21.0 + - - +
71I ILE* 4.5 1.8 - - - +
73I ALA* 1.3 72.8 - - - +
75I LEU* 1.3 53.8 + - - +
78I LEU* 2.6 41.5 + - - +
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Residues in contact with LEU 75 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71I ILE* 2.9 21.7 + - + +
74I ILE* 1.3 72.6 - - + +
76I LYS* 1.3 66.7 + - - +
78I LEU* 3.2 1.8 + - - +
79I GLN* 2.9 28.2 + - - +
82K LEU 4.0 7.2 - - - +
83K SER* 3.6 34.3 - - - -
84K MET* 4.2 6.7 - - + +
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Residues in contact with LYS 76 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69G THR* 5.1 4.9 - - - -
71I ILE 3.5 1.2 + - - -
72I PRO* 2.8 31.4 + - + +
75I LEU* 1.3 76.4 - - - +
77I ALA* 1.3 55.4 + - - +
79I GLN* 4.5 2.0 - - - +
80I ASP* 2.8 34.9 + - - +
83K SER* 4.8 4.9 - - - -
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Residues in contact with ALA 77 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69G THR* 3.7 26.9 - - - -
70G SER 5.0 9.0 - - - +
71G ILE* 6.1 0.7 - - - -
74G ILE* 5.5 4.9 - - + -
72I PRO 2.8 8.5 + - - -
73I ALA* 2.5 26.2 + - + +
76I LYS* 1.3 71.3 - - - +
78I LEU* 1.3 60.0 + - - +
80I ASP* 4.4 2.7 - - - -
81I GLU* 2.9 33.7 + - + +
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Residues in contact with LEU 78 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72H PRO* 5.2 14.4 - - + -
74I ILE* 2.6 25.4 + - - +
75I LEU* 3.8 2.5 - - - +
77I ALA* 1.3 78.1 - - - +
79I GLN* 1.3 56.7 + - - +
81I GLU* 4.4 1.3 - - - +
82I TRP* 2.9 35.1 + - - +
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Residues in contact with GLN 79 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75I LEU 2.9 15.1 + - - +
76I LYS* 4.5 2.0 - - - +
78I LEU* 1.3 77.4 - - - +
80I ASP* 1.3 53.0 + - - +
82I TRP* 4.7 2.7 - - - -
83I ASP* 2.7 40.3 + - - +
81K LEU* 4.4 32.1 - - + +
82K LEU 5.0 3.8 - - - +
83K SER* 5.8 2.2 - - - -
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Residues in contact with ASP 80 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68G ALA* 5.0 16.6 - - + -
69G THR* 5.6 2.2 - - - +
76I LYS 2.8 23.5 + - - +
77I ALA* 4.2 3.6 - - - +
79I GLN* 1.3 76.5 - - - +
81I GLU* 1.3 60.3 + - - +
83I ASP* 4.0 2.5 - - - +
84I ALA* 2.9 31.0 + - - +
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Residues in contact with GLU 81 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71G ILE* 6.4 1.6 - - + -
77I ALA* 2.9 21.2 + - + +
78I LEU* 4.4 1.1 - - - +
80I ASP* 1.3 74.4 - - - +
82I TRP* 1.3 60.7 + - - +
84I ALA* 3.4 5.2 + - - +
85I VAL* 2.9 30.3 + - - +
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Residues in contact with TRP 82 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78I LEU 2.9 20.9 + - - +
79I GLN* 4.5 2.9 - - - +
81I GLU* 1.3 77.4 - - - +
83I ASP* 1.3 57.4 + - - +
85I VAL* 4.0 4.6 - - - +
86I MET* 2.9 30.7 + - - +
71K GLU* 4.9 16.4 - - + +
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Residues in contact with ASP 83 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79I GLN* 2.7 24.2 + - + +
80I ASP* 4.0 2.9 - - - +
82I TRP* 1.3 74.8 - - - +
84I ALA* 1.3 60.3 + - - +
86I MET* 3.8 5.8 - - - +
87I LEU* 2.9 30.5 + - - +
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Residues in contact with ALA 84 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80I ASP 2.9 20.8 + - - +
81I GLU* 3.8 5.2 - - - +
83I ASP* 1.3 75.2 - - - +
85I VAL* 1.3 59.8 + - - +
87I LEU* 3.8 4.3 - - - +
88I HIS* 2.9 29.9 + - - +
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Residues in contact with VAL 85 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81I GLU 2.9 18.5 + - - +
82I TRP* 4.1 4.9 - - - +
84I ALA* 1.3 76.1 - - - +
86I MET* 1.3 58.4 + - - +
88I HIS* 3.8 5.9 - - - +
89I SER* 2.9 30.0 + - - -
82J TRP* 5.0 16.6 - - + -
71K GLU* 6.5 0.4 - - + -
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Residues in contact with MET 86 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82I TRP 2.9 20.3 + - - +
83I ASP* 3.8 5.6 - - - +
85I VAL* 1.3 77.1 - - - +
87I LEU* 1.3 57.5 + - - +
89I SER* 3.4 4.6 + - - -
90I PHE* 2.9 32.3 + - - +
71K GLU* 4.3 17.2 - - + +
72K ARG* 5.8 0.7 - - - -
75K ALA* 3.8 28.7 - - + +
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Residues in contact with LEU 87 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83I ASP 2.9 18.3 + - - +
84I ALA* 3.9 4.9 - - - +
86I MET* 1.3 77.4 - - - +
88I HIS* 1.3 57.2 + - - +
90I PHE* 4.6 4.0 - - - +
91I THR* 2.9 32.9 + - - -
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Residues in contact with HIS 88 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84I ALA 2.9 18.5 + - - +
85I VAL* 3.8 7.4 - - - +
87I LEU* 1.3 76.3 - - - +
89I SER* 1.3 60.2 + - - +
91I THR* 4.2 3.0 - - - -
92I LEU* 2.9 30.5 + - - +
86J MET* 6.4 2.0 - - + -
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Residues in contact with SER 89 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85I VAL 2.9 18.1 + - - -
86I MET* 3.9 4.7 - - - -
88I HIS* 1.3 75.0 - - - +
90I PHE* 1.3 61.5 + - - +
92I LEU* 3.4 5.3 + - - +
93I ARG* 2.9 29.6 + - - +
85J VAL* 5.9 5.4 - - - -
89J SER* 6.1 0.9 - - - -
59K SER* 4.3 18.6 - - - -
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Residues in contact with PHE 90 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86I MET 2.9 17.9 + - - +
87I LEU* 4.2 4.5 - - - +
89I SER* 1.3 77.9 - - - +
91I THR* 1.3 57.5 + - - +
93I ARG* 3.3 5.3 + - - +
94I GLN* 2.9 31.1 + - - +
75K ALA* 6.1 3.6 - - + -
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Residues in contact with THR 91 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87I LEU 2.9 21.4 + - - -
88I HIS* 4.2 4.5 - - - -
90I PHE* 1.3 77.4 - - - +
92I LEU* 1.3 58.1 + - - +
94I GLN* 4.1 5.0 - - - +
95I GLN* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 92 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88I HIS 2.9 20.8 + - - +
89I SER* 3.7 5.8 - - - +
91I THR* 1.3 75.7 - - - +
93I ARG* 1.3 59.9 + - - +
95I GLN* 3.8 5.2 - - - +
96I LEU* 2.9 29.5 + - - +
89J SER* 3.9 30.5 - - - +
58K TYR* 4.2 4.7 - - - +
59K SER* 5.5 1.3 - - - -
----------------------------------------------------------
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Residues in contact with ARG 93 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89I SER 2.9 18.2 + - - +
90I PHE* 3.7 6.7 - - - +
92I LEU* 1.3 73.7 - - - +
94I GLN* 1.3 58.3 + - - +
96I LEU* 3.2 2.8 + - - +
97I GLN* 2.9 29.6 + - - +
58K TYR* 3.7 21.1 - - + +
59K SER* 4.6 10.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 94 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90I PHE 2.9 17.0 + - - +
91I THR* 4.1 5.4 - - - +
93I ARG* 1.3 76.0 - - - +
95I GLN* 1.3 57.8 + - - +
97I GLN* 3.4 6.0 + - - +
98I THR* 2.9 31.9 + - - -
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Residues in contact with GLN 95 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91I THR 2.9 20.8 + - - +
92I LEU* 3.8 6.1 - - - +
94I GLN* 1.3 76.9 - - - +
96I LEU* 1.3 58.5 + - - +
98I THR* 4.3 4.0 - - - +
99I THR* 2.9 29.5 + - - -
96J LEU* 5.0 2.5 - - + +
----------------------------------------------------------
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Residues in contact with LEU 96 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92I LEU 2.9 18.1 + - - +
93I ARG 3.7 0.2 - - - +
95I GLN* 1.3 76.6 - - - +
97I GLN* 1.3 59.0 + - - +
99I THR* 3.8 5.6 - - - -
100I ARG* 2.9 28.6 + - - +
92J LEU* 5.4 9.4 - - + +
96J LEU* 5.5 3.6 - - + -
53K LEU* 4.9 4.1 - - + +
57K ASP 4.1 7.6 - - - +
58K TYR* 3.4 29.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN 97 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93I ARG 2.9 17.1 + - - +
94I GLN* 3.8 6.7 - - - +
96I LEU* 1.3 74.2 - - - +
98I THR* 1.3 60.9 + - - +
100I ARG* 3.1 7.2 + - - +
101I GLN* 2.9 28.5 + - - +
58K TYR* 5.3 0.2 - - - +
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Residues in contact with THR 98 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94I GLN 2.9 17.9 + - - -
95I GLN* 4.3 4.0 - - - -
97I GLN* 1.3 77.1 - - - +
99I THR* 1.3 57.6 + - - +
101I GLN* 3.8 6.8 - - - +
102I GLU* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 99 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95I GLN 2.9 22.1 + - - -
96I LEU* 3.8 4.9 - - - -
98I THR* 1.3 74.3 - - - +
100I ARG* 1.3 61.2 + - - +
102I GLU* 3.8 5.4 - - - +
103I LEU* 2.9 30.0 + - - +
96J LEU* 3.7 33.2 - - - -
99J THR* 5.1 3.9 - - - -
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Residues in contact with ARG 100 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96I LEU 2.9 18.9 + - - +
97I GLN* 3.5 7.6 - - - +
99I THR* 1.3 75.3 - - - +
101I GLN* 1.3 59.5 + - - +
103I LEU* 3.3 5.7 + - - +
104I SER* 2.9 28.4 + - - -
49K TYR* 4.3 3.7 - - - +
50K LEU* 5.1 4.0 + - - -
53K LEU* 3.4 30.3 - - + -
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Residues in contact with GLN 101 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97I GLN 2.9 15.8 + - - +
98I THR* 3.9 7.0 - - - +
100I ARG* 1.3 73.5 - - - +
102I GLU* 1.3 58.4 + - - +
104I SER* 3.2 7.3 + - - +
105I HIS* 2.9 30.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 102 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98I THR 2.9 19.0 + - - +
99I THR* 4.0 5.4 - - - +
101I GLN* 1.3 76.0 - - - +
103I LEU* 1.3 58.0 + - - +
105I HIS* 3.9 7.0 - - - +
106I ALA* 2.9 27.5 + - - +
100J ARG* 5.6 7.6 - - + -
103J LEU* 4.9 3.1 - - + +
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Residues in contact with LEU 103 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99I THR 2.9 19.7 + - - +
100I ARG* 3.6 4.9 - - - +
101I GLN 3.1 0.4 - - - -
102I GLU* 1.3 76.7 - - - +
104I SER* 1.3 60.0 + - - +
106I ALA* 3.2 8.1 + - - +
107I LEU* 2.9 23.7 + - - +
99J THR* 4.2 24.9 - - - -
100J ARG* 5.7 1.5 - - + +
49K TYR* 3.1 29.7 - - + +
----------------------------------------------------------
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Residues in contact with SER 104 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100I ARG 2.9 16.5 + - - -
101I GLN* 3.2 6.7 + - - -
103I LEU* 1.3 74.6 - - - +
105I HIS* 1.3 60.2 + - - +
107I LEU* 3.2 6.1 + - - +
108I TYR* 2.9 26.7 + - - +
45K PRO 5.4 7.2 - - - -
46K THR* 5.5 9.2 - - - -
47K LYS 6.3 0.2 - - - -
49K TYR* 3.2 10.9 - - - +
50K LEU* 5.2 5.4 - - - -
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Residues in contact with HIS 105 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101I GLN 2.9 16.5 + - - +
102I GLU* 4.0 6.5 - - - +
104I SER* 1.3 76.3 - - - +
106I ALA* 1.3 57.7 + - - +
108I TYR* 3.3 8.1 + - - +
109I GLN* 2.9 29.5 + - - +
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Residues in contact with ALA 106 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102I GLU 2.9 20.7 + - - +
103I LEU* 3.4 9.2 - - - +
104I SER 3.2 0.4 - - - -
105I HIS* 1.3 77.7 - - - +
107I LEU* 1.3 56.0 + - - +
109I GLN* 3.4 6.6 + - - +
110I HIS* 2.9 27.6 + - - +
99J THR 5.3 0.7 - - - +
102J GLU 5.6 0.2 - - - -
103J LEU* 3.7 33.0 - - + +
106J ALA* 4.8 6.6 - - + +
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Residues in contact with LEU 107 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103I LEU 2.9 16.1 + - - +
104I SER* 3.2 7.2 + - - +
106I ALA* 1.3 73.7 - - - +
108I TYR* 1.3 61.8 + - - +
110I HIS* 3.5 7.0 - - - +
111I ASP* 2.9 31.2 + - - +
47K LYS* 6.2 3.1 - - + +
48K ASN* 5.5 7.6 - - + +
49K TYR* 4.8 11.0 - - + +
----------------------------------------------------------
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Residues in contact with TYR 108 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104I SER 2.9 16.0 + - - +
105I HIS* 3.6 9.6 - - - +
106I ALA 3.3 0.2 - - - -
107I LEU* 1.3 76.1 - - - +
109I GLN* 1.3 55.9 + - - +
111I ASP* 3.9 3.5 - - - +
112I ALA* 2.9 31.5 + - - +
40K THR* 5.2 15.7 - - - -
44K ARG* 6.3 4.5 - - + -
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Residues in contact with GLN 109 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105I HIS 2.9 15.9 + - - +
106I ALA* 3.8 7.4 - - - +
108I TYR* 1.3 75.7 - - - +
110I HIS* 1.3 57.6 + - - +
112I ALA* 3.8 6.0 - - - +
113I ALA* 2.9 32.2 + - - +
106J ALA* 6.1 0.4 - - + -
110J HIS* 5.0 5.3 - - + +
36K VAL* 4.9 7.7 - - + +
----------------------------------------------------------
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Residues in contact with HIS 110 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106I ALA 2.9 18.0 + - - +
107I LEU* 3.1 9.8 + - - +
109I GLN* 1.3 75.1 - - - +
111I ASP* 1.3 61.2 + - - +
113I ALA* 3.9 2.0 - - - +
114I CYS* 2.9 30.4 + - - +
106J ALA* 4.5 20.6 - - + -
----------------------------------------------------------
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Residues in contact with ASP 111 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107I LEU 2.9 15.5 + - - +
108I TYR* 4.2 4.3 - - - +
110I HIS* 1.3 76.5 - - - +
112I ALA* 1.3 56.9 + - - +
114I CYS* 3.5 6.4 - - - +
115I ARG* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 112 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108I TYR 2.9 23.0 + - - +
109I GLN 3.8 2.2 - - - +
111I ASP* 1.3 73.1 - - - +
113I ALA* 1.3 61.2 + - - +
114I CYS 3.1 1.5 + - - -
115I ARG* 3.3 4.8 + - - +
116I VAL* 2.9 28.2 + - - +
35K LEU 5.3 0.5 - - - -
36K VAL* 3.3 44.7 + - + +
39K GLU* 4.4 15.3 - - + -
40K THR 5.5 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 113 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109I GLN 2.9 21.1 + - - +
110I HIS* 4.5 1.3 - - - +
112I ALA* 1.3 73.1 - - - +
114I CYS* 1.3 55.8 - - - +
116I VAL* 4.3 7.4 - - - +
117I ILE* 2.9 31.2 + - - +
110J HIS* 3.7 34.1 - - + +
113J ALA* 5.8 0.7 - - + +
114J CYS* 5.3 6.9 - - + +
32K ALA* 5.4 8.7 - - + +
36K VAL* 4.6 5.2 - - + +
----------------------------------------------------------
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Residues in contact with CYS 114 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110I HIS 2.9 22.2 + - - +
111I ASP* 3.5 9.2 - - - +
112I ALA 3.1 0.2 - - - -
113I ALA* 1.3 76.1 - - - +
115I ARG* 1.3 60.4 + - - +
117I ILE* 3.9 4.0 - - - +
118I ALA* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 115 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111I ASP 2.9 16.5 + - - +
112I ALA* 3.3 4.7 + - - +
114I CYS* 1.3 73.2 - - - +
116I VAL* 1.3 61.0 + - - +
118I ALA* 3.9 4.7 - - - +
119I ARG* 2.9 31.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 116 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112I ALA 2.9 16.7 + - - +
113I ALA* 4.3 6.7 - - - +
115I ARG* 1.3 76.7 - - - +
117I ILE* 1.3 56.5 + - - +
119I ARG* 4.3 4.0 - - - +
120I LEU* 2.9 32.6 + - - +
114J CYS* 5.6 4.9 - - + -
32K ALA* 5.1 10.1 - - + +
35K LEU* 3.9 26.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 117 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113I ALA 2.9 22.3 + - - +
114I CYS* 3.9 5.6 - - - +
116I VAL* 1.3 76.7 - - - +
118I ALA* 1.3 60.0 + - - +
120I LEU* 4.2 3.5 - - - +
121I THR* 2.9 30.7 + - - -
113J ALA* 4.7 20.4 - - + +
114J CYS* 4.8 10.7 - - - +
117J ILE* 4.7 6.4 - - + +
----------------------------------------------------------
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Residues in contact with ALA 118 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114I CYS 2.9 18.1 + - - +
115I ARG* 3.9 5.2 - - - +
117I ILE* 1.3 75.0 - - - +
119I ARG* 1.3 59.9 + - - +
121I THR* 3.4 4.5 + - - -
122I LYS* 2.9 29.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 119 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115I ARG 2.9 17.5 + - - +
116I VAL* 4.3 4.5 - - - +
118I ALA* 1.3 77.3 - - - +
120I LEU* 1.3 57.4 + - - +
122I LYS* 3.4 6.4 + - - +
123I GLU* 2.9 29.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116I VAL 2.9 21.9 + - - +
117I ILE 4.2 0.2 - - - +
119I ARG* 1.3 77.2 - - - +
121I THR* 1.3 58.2 + - - +
123I GLU* 3.4 6.4 + - - +
124I VAL* 2.9 29.3 + - - +
114J CYS* 6.0 0.9 - - + -
117J ILE* 3.6 29.4 - - + +
121J THR* 5.0 4.3 - - - -
----------------------------------------------------------
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Residues in contact with THR 121 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117I ILE 2.9 21.4 + - - -
118I ALA* 3.8 5.4 - - - -
120I LEU* 1.3 75.4 - - - +
122I LYS* 1.3 58.3 + - - +
124I VAL* 3.4 6.0 + - - +
125I THR* 2.9 30.0 + - - -
117J ILE* 4.4 6.4 - - - +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118I ALA 2.9 17.7 + - - +
119I ARG* 3.8 6.5 - - - +
121I THR* 1.3 75.8 - - - +
123I GLU* 1.3 58.1 + - - +
125I THR* 4.0 5.1 - - - -
126I ALA* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119I ARG 2.9 18.3 + - - +
120I LEU* 3.8 6.5 - - - +
122I LYS* 1.3 73.6 - - - +
124I VAL* 1.3 61.1 + - - +
126I ALA* 3.8 5.8 - - - +
127I ALA* 2.9 30.5 + - - +
121J THR* 5.8 5.6 - - - -
----------------------------------------------------------
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Residues in contact with VAL 124 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120I LEU 2.9 18.0 + - - +
121I THR* 3.8 6.3 - - - +
123I GLU* 1.3 76.9 - - - +
125I THR* 1.3 57.5 + - - +
128I ARG* 2.9 30.3 + - - +
117J ILE* 4.7 1.1 - - - +
120J LEU* 3.7 39.9 - - + +
121J THR* 3.9 7.3 - - - +
124J VAL* 3.6 11.6 - - - +
----------------------------------------------------------
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Residues in contact with THR 125 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121I THR 2.9 18.3 + - - -
122I LYS* 4.0 5.8 - - - -
124I VAL* 1.3 73.9 - - - +
126I ALA* 1.3 60.3 + - - +
128I ARG* 3.8 6.0 - - - +
129I GLU* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122I LYS 2.9 19.5 + - - +
123I GLU* 3.8 6.5 - - - +
125I THR* 1.3 77.2 - - - +
127I ALA* 1.3 58.2 + - - +
129I GLU* 3.5 4.9 + - - +
130I ALA* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 127 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123I GLU 2.9 18.1 + - - +
124I VAL* 4.7 0.2 - - - -
126I ALA* 1.3 73.6 - - - +
128I ARG* 1.3 61.3 + - - +
130I ALA* 3.8 6.5 - - - +
131I LEU* 2.9 28.6 + - - +
121J THR* 5.6 0.7 - - - +
124J VAL* 3.7 27.1 - - + +
125J THR* 4.7 2.9 - - - +
128J ARG* 4.0 10.5 - - + +
----------------------------------------------------------
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Residues in contact with ARG 128 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124I VAL 2.9 18.4 + - - +
125I THR* 3.8 7.4 - - - +
126I ALA 3.3 0.2 - - - -
127I ALA* 1.3 75.8 - - - +
129I GLU* 1.3 60.8 + - - +
131I LEU* 3.2 7.1 + - - +
132I ALA* 2.9 28.1 + - - +
124J VAL* 3.9 10.7 - - + +
127J ALA* 6.2 0.4 - - - -
----------------------------------------------------------
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Residues in contact with GLU 129 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125I THR 2.9 18.3 + - - +
126I ALA* 3.9 5.8 - - - +
128I ARG* 1.3 76.1 - - - +
130I ALA* 1.3 56.7 + - - +
132I ALA* 3.3 7.0 + - - +
133I THR* 2.9 31.5 + - - -
----------------------------------------------------------
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Residues in contact with ALA 130 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126I ALA 2.9 18.5 + - - +
127I ALA* 3.8 7.6 - - - +
128I ARG 3.3 0.2 - - - -
129I GLU* 1.3 76.1 - - - +
131I LEU* 1.3 57.5 + - - +
133I THR* 3.8 3.3 - - - +
134I LEU* 2.8 32.7 + - - +
128J ARG* 5.5 3.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 131 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127I ALA 2.9 19.3 + - - +
128I ARG* 3.2 7.6 + - - +
130I ALA* 1.3 76.0 - - - +
132I ALA* 1.3 62.0 + - - +
134I LEU* 3.8 7.6 + - - -
135I LYS 4.2 1.9 + - - -
127J ALA* 3.7 18.2 - - + +
128J ARG* 3.6 31.8 - - - +
131J LEU* 3.6 18.5 - - + +
189K VAL* 4.9 5.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128I ARG 2.9 16.1 + - - +
129I GLU* 3.3 8.0 + - - +
131I LEU* 1.3 79.2 - - - +
133I THR* 1.3 58.4 + - - +
134I LEU 3.6 0.2 + - - -
135I LYS* 4.0 11.8 + - - +
136I PRO 5.1 0.9 - - - -
185K TRP* 5.3 15.7 - - + +
189K VAL* 4.4 11.3 - - - +
----------------------------------------------------------
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Residues in contact with THR 133 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129I GLU 2.9 16.8 + - - -
130I ALA* 3.8 3.4 - - - -
132I ALA* 1.3 74.8 - - - +
134I LEU* 1.3 60.7 + - - +
135I LYS 3.3 2.0 + - - -
136I PRO* 4.0 14.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 134 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130I ALA 2.8 21.8 + - - +
131I LEU* 4.1 8.1 - - - +
132I ALA 3.3 1.2 - - - -
133I THR* 1.3 77.8 - - - +
135I LYS* 1.3 63.4 + - - +
136I PRO 3.6 4.4 - - - -
128J ARG 5.7 0.4 - - - +
131J LEU* 4.3 17.7 - - + +
132J ALA* 4.7 8.7 - - + +
135J LYS* 3.9 19.5 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il