Contacts of the helix formed by residues 147 - 176 (chain P) in PDB entry 6MZL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 147 (chain P).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    135P  LYS*     5.7     0.2    -      -       -      -
    146P  VAL*     1.3    78.8    -      -       -      +
    148P  GLN*     1.3    64.0    +      -       -      +
    149P  ASN*     4.0    12.2    +      -       -      +
    150P  VAL*     3.3    38.9    +      -       -      +
    151P  VAL*     3.6     8.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 148 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  ASP*     4.4    11.7    +      -       -      +
     64A  LYS*     3.4    42.2    -      -       +      +
    131P  LYS*     4.2    16.5    -      -       +      +
    135P  LYS*     6.1     1.6    -      -       -      +
    146P  VAL      4.0     0.2    +      -       -      -
    147P  SER*     1.3    73.2    -      -       -      +
    149P  ASN*     1.3    60.8    +      -       -      +
    150P  VAL      3.2     0.2    -      -       -      -
    151P  VAL*     3.1    18.6    +      -       +      +
    152P  ILE*     3.0    30.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 149 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LYS*     5.7     1.7    -      -       -      +
    147P  SER*     3.3    10.1    +      -       -      +
    148P  GLN*     1.3    77.5    -      -       -      +
    150P  VAL*     1.3    60.7    +      -       +      +
    152P  ILE*     3.3    22.6    +      -       +      +
    153P  ALA*     2.9    29.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 150 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    138P  ILE*     4.3    26.9    -      -       +      -
    146P  VAL*     4.7     7.0    -      -       +      -
    147P  SER*     3.3    31.6    +      -       -      +
    148P  GLN      3.2     0.4    -      -       -      -
    149P  ASN*     1.3    78.1    -      -       +      +
    151P  VAL*     1.3    57.6    +      -       +      +
    153P  ALA*     3.9     5.4    -      -       +      +
    154P  MET*     2.9    35.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 151 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LYS*     6.0     0.4    -      -       -      +
    131P  LYS*     4.0    30.3    -      -       +      +
    134P  ILE*     3.8    28.7    -      -       +      -
    135P  LYS*     4.3    29.8    -      -       +      +
    138P  ILE*     4.9     2.9    -      -       +      -
    146P  VAL*     4.9     7.2    -      -       +      +
    147P  SER      3.9    13.5    -      -       -      +
    148P  GLN*     3.1    17.8    +      -       +      +
    150P  VAL*     1.3    73.4    -      -       -      +
    152P  ILE*     1.3    61.4    +      -       +      +
    154P  MET*     4.0     0.7    -      -       -      +
    155P  SER*     2.9    38.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 152 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LYS*     3.4    41.7    -      -       +      +
     65A  HIS*     5.2     5.8    -      -       +      +
    148P  GLN      3.0    13.0    +      -       -      +
    149P  ASN*     3.3    28.2    +      -       -      +
    151P  VAL*     1.3    78.7    -      -       +      +
    153P  ALA*     1.3    58.1    +      -       -      +
    155P  SER*     3.8     4.4    -      -       -      -
    156P  GLY*     3.0    25.8    +      -       -      -
    286T  GLU*     5.0    16.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 153 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149P  ASN      2.9    16.8    +      -       -      +
    150P  VAL*     3.9     5.6    -      -       -      +
    152P  ILE*     1.3    78.2    -      -       -      +
    154P  MET*     1.3    58.4    +      -       -      +
    156P  GLY*     3.3     1.5    +      -       -      -
    157P  ILE*     2.9    44.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 154 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    134P  ILE*     4.2     7.0    -      -       +      -
    138P  ILE*     3.8    26.0    -      -       +      -
    150P  VAL*     2.9    24.3    +      -       +      +
    151P  VAL      4.0     2.7    -      -       -      +
    153P  ALA*     1.3    76.7    -      -       -      +
    155P  SER*     1.3    58.3    +      -       -      +
    157P  ILE*     3.9     5.3    -      -       +      -
    158P  SER*     2.8    37.1    +      -       -      -
     64S  PHE*     5.0     2.7    -      -       -      -
     65S  ILE*     3.9    28.9    -      -       +      +
     68S  MET*     4.0    34.5    -      -       +      -
     69S  THR*     3.9    24.7    -      -       -      +
     72S  ALA*     5.9     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 155 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    128P  ALA*     5.9     3.6    -      -       -      -
    129P  PHE*     4.0    26.8    +      -       -      +
    131P  LYS*     5.8     0.2    -      -       -      -
    134P  ILE*     3.4    25.8    -      -       -      +
    151P  VAL*     2.9    23.1    +      -       -      +
    152P  ILE*     3.9     4.3    -      -       -      -
    154P  MET*     1.3    75.5    -      -       -      +
    156P  GLY*     1.3    57.6    +      -       -      +
    158P  SER*     3.5     6.1    +      -       -      -
    159P  LYS*     2.9    29.3    +      -       -      +
     39S  MET*     5.7     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 156 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    152P  ILE      3.0    14.9    +      -       -      -
    153P  ALA*     3.8     2.9    -      -       -      -
    154P  MET      3.3     0.2    -      -       -      -
    155P  SER*     1.3    75.0    -      -       -      +
    157P  ILE*     1.3    60.2    +      -       -      +
    159P  LYS*     3.2     8.8    +      -       -      +
    160P  VAL*     3.0    33.2    +      -       -      +
    286T  GLU*     4.8    15.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 157 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    153P  ALA*     2.9    30.4    +      -       +      +
    154P  MET*     4.2     6.3    -      -       +      +
    156P  GLY*     1.3    74.8    -      -       -      +
    158P  SER*     1.3    58.0    +      -       -      +
    160P  VAL*     3.3    11.4    +      -       +      +
    161P  PHE*     3.0    26.2    +      -       -      +
     64S  PHE*     3.8    20.8    -      -       +      -
     68S  MET*     4.3    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 158 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    129P  PHE*     3.7    25.8    -      -       -      -
    154P  MET*     2.8    25.6    +      -       -      +
    155P  SER      3.8     2.2    -      -       -      -
    157P  ILE*     1.3    76.8    -      -       -      +
    159P  LYS*     1.3    56.9    +      -       -      +
    161P  PHE*     3.3     2.6    +      -       -      +
    162P  VAL*     2.9    34.3    +      -       -      +
     61S  VAL*     5.1     3.8    -      -       -      -
     64S  PHE*     3.4    28.6    -      -       -      -
     65S  ILE*     3.6    16.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 159 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    124P  TYR*     3.0    31.0    +      -       -      -
    125P  ARG*     3.5    13.9    +      -       -      +
    127P  SER*     3.0    37.9    +      -       -      +
    128P  ALA*     5.3     2.0    -      -       +      -
    129P  PHE*     4.9     0.4    -      -       -      -
    155P  SER      2.9    18.5    +      -       -      +
    156P  GLY*     3.2     9.2    +      -       -      +
    158P  SER*     1.3    74.1    -      -       -      +
    160P  VAL*     1.3    59.8    +      -       +      +
    162P  VAL*     3.3     1.6    +      -       -      +
    163P  GLY*     2.9    26.5    +      -       -      -
     39S  MET*     3.7    25.1    -      -       +      -
     43S  PHE*     4.1    19.5    -      -       +      -
    286T  GLU*     5.9     3.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 160 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156P  GLY      3.0    21.7    +      -       -      +
    157P  ILE*     3.5    12.3    -      -       +      +
    159P  LYS*     1.3    74.8    -      -       +      +
    161P  PHE*     1.3    62.7    +      -       -      +
    163P  GLY*     3.4     2.1    +      -       -      -
    164P  GLU*     3.0    44.3    +      -       +      +
     43S  PHE*     5.9     0.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 161 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    157P  ILE      3.0    13.1    +      -       -      +
    158P  SER      3.4    10.1    -      -       -      +
    160P  VAL*     1.3    78.9    -      -       -      +
    162P  VAL*     1.3    70.9    +      -       +      +
    164P  GLU*     3.4     8.7    +      -       -      +
    165P  VAL*     3.0    38.0    +      -       +      +
    191P  VAL*     3.7    20.6    -      -       +      -
    194P  LEU*     5.8     0.4    -      -       +      -
    200P  ILE*     3.8    25.8    -      -       +      -
    127Q  TRP*     3.7    35.7    -      +       +      -
     57S  LEU*     5.8     0.4    -      -       +      -
     60S  LEU*     3.8    36.6    -      -       +      -
     61S  VAL*     5.3     2.0    -      -       +      -
     64S  PHE*     3.6    35.7    -      +       +      -
----------------------------------------------------------
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Residues in contact with VAL 162 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    129P  PHE*     4.1     1.8    -      -       +      -
    158P  SER      2.9    20.5    +      -       -      +
    159P  LYS      3.8     4.5    -      -       -      +
    161P  PHE*     1.3    79.4    -      -       +      +
    163P  GLY*     1.3    58.1    +      -       -      +
    165P  VAL*     3.2     6.9    +      -       -      +
    166P  VAL*     2.9    40.1    +      -       +      +
     36S  LEU*     3.8    21.1    -      -       +      -
     39S  MET*     3.7    32.3    -      -       +      +
     40S  MET      5.2     0.4    -      -       -      +
     43S  PHE*     4.9     0.2    -      -       +      -
     57S  LEU*     3.6    26.9    -      -       +      -
     61S  VAL*     4.0    14.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 163 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    159P  LYS      2.9    12.9    +      -       -      -
    160P  VAL*     3.8     1.6    -      -       -      -
    161P  PHE      3.3     0.2    -      -       -      -
    162P  VAL*     1.3    77.8    -      -       -      +
    164P  GLU*     1.3    61.0    +      -       -      +
    166P  VAL*     3.4     1.7    +      -       -      +
    167P  GLU*     3.0    32.8    +      -       -      +
     43S  PHE*     3.6    37.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 164 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    160P  VAL*     3.0    38.7    +      -       +      +
    161P  PHE*     3.7     7.9    -      -       -      +
    163P  GLY*     1.3    74.8    -      -       -      +
    165P  VAL*     1.3    57.1    +      -       -      +
    167P  GLU*     3.8    12.4    -      -       -      +
    168P  GLU*     3.0    30.7    +      -       -      +
    194P  LEU*     3.5    22.3    -      -       +      +
    199P  GLN*     4.8     5.1    -      -       -      +
    200P  ILE*     3.6    26.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 165 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    161P  PHE*     3.0    33.2    +      -       +      +
    162P  VAL*     3.4    10.8    -      -       -      +
    163P  GLY      3.2     0.2    -      -       -      -
    164P  GLU*     1.3    76.8    -      -       -      +
    166P  VAL*     1.3    57.9    +      -       -      +
    168P  GLU*     3.3     1.4    +      -       -      -
    169P  ALA*     2.9    23.7    +      -       -      +
    187P  MET*     3.9    23.1    -      -       -      +
    190P  ALA*     3.4     7.9    -      -       +      +
    191P  VAL*     3.6    40.4    -      -       +      -
    194P  LEU*     3.8    15.9    -      -       +      -
     57S  LEU*     4.6     5.8    -      -       +      -
     60S  LEU*     4.2    10.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 166 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    162P  VAL*     2.9    33.7    +      -       +      +
    165P  VAL*     1.3    74.9    -      -       -      +
    167P  GLU*     1.3    58.4    +      -       -      +
    169P  ALA*     3.2     1.9    +      -       -      +
    170P  LEU*     2.9    28.6    +      -       +      +
    182P  LEU*     4.3     2.2    -      -       +      -
    187P  MET*     3.7    32.5    -      -       +      -
     40S  MET*     3.7    31.0    -      -       -      +
     43S  PHE*     3.7    28.9    -      -       +      +
     45S  ASP*     4.2     9.9    -      -       +      +
     57S  LEU*     4.4     4.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 167 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    163P  GLY      3.0    22.5    +      -       -      +
    164P  GLU*     3.8    11.8    -      -       -      +
    166P  VAL*     1.3    77.9    -      -       -      +
    168P  GLU*     1.3    60.9    +      -       -      +
    170P  LEU*     3.3    12.3    +      -       +      +
    171P  ASP*     3.0    20.3    +      -       -      +
     43S  PHE*     4.4    25.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 168 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    164P  GLU      3.0    18.7    +      -       -      +
    167P  GLU*     1.3    75.6    -      -       -      +
    169P  ALA*     1.3    58.2    +      -       -      +
    171P  ASP*     3.2    23.8    +      -       -      +
    172P  VAL*     2.9    31.7    +      -       -      +
    190P  ALA*     3.4    35.4    -      -       +      +
    193P  ARG*     3.3    19.5    +      -       +      -
    194P  LEU*     4.0    16.6    -      -       +      +
    197P  LYS*     3.0    33.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 169 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    165P  VAL      2.9    17.9    +      -       -      +
    166P  VAL      3.2     5.4    +      -       -      +
    168P  GLU*     1.3    74.5    -      -       -      +
    170P  LEU*     1.3    60.0    +      -       -      +
    172P  VAL*     3.3     3.2    +      -       -      +
    173P  CYS*     2.9    30.1    +      -       -      +
    182P  LEU*     3.6    21.5    -      -       +      +
    186P  HIS*     3.7    23.5    -      -       -      +
    187P  MET*     3.8    15.0    -      -       -      +
    190P  ALA*     3.3     7.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 170 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    166P  VAL*     2.9    16.7    +      -       +      +
    167P  GLU*     3.5    12.6    -      -       +      +
    169P  ALA*     1.3    73.9    -      -       -      +
    171P  ASP*     1.3    58.8    +      -       -      +
    173P  CYS*     3.6     4.0    -      -       +      +
    174P  GLU*     2.9    39.0    +      -       -      +
    180P  PRO*     4.2    18.4    -      -       +      -
    182P  LEU*     3.9    15.5    -      -       +      -
     43S  PHE      3.4    25.4    -      -       -      +
     44S  GLY*     3.3    31.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 171 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    167P  GLU      3.0    13.2    +      -       -      +
    168P  GLU*     3.2    22.3    +      -       -      +
    170P  LEU*     1.3    76.1    -      -       -      +
    172P  VAL*     1.3    54.9    +      -       -      +
    174P  GLU*     3.6    13.9    -      -       -      +
    175P  LYS*     3.0    66.6    +      -       -      +
    193P  ARG*     3.3    23.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 172 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    168P  GLU      2.9    19.2    +      -       -      +
    169P  ALA*     3.5     9.6    -      -       -      +
    170P  LEU      3.3     0.2    -      -       -      -
    171P  ASP*     1.3    76.0    -      -       -      +
    173P  CYS*     1.3    53.4    +      -       -      +
    175P  LYS      3.3     0.9    +      -       -      -
    176P  TRP*     2.8    59.3    +      -       +      +
    186P  HIS*     4.2    14.8    -      -       +      +
    189P  GLU*     3.6    25.1    -      -       +      -
    190P  ALA*     4.5     2.9    -      -       -      -
    193P  ARG*     3.4    35.2    -      -       -      +
     69Q  GLU*     3.5    12.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 173 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    169P  ALA      2.9    20.5    +      -       -      +
    170P  LEU*     3.6     5.8    -      -       +      +
    172P  VAL*     1.3    72.9    -      -       -      +
    174P  GLU*     1.3    61.0    +      -       -      +
    176P  TRP*     3.3     2.6    +      -       -      +
    177P  GLY      3.2    12.3    +      -       -      -
    178P  GLU      2.9    37.8    +      -       -      +
    179P  MET*     3.5    23.8    -      -       -      -
    180P  PRO*     3.6    11.2    -      -       +      -
    182P  LEU*     3.6    15.5    -      -       +      -
    186P  HIS*     3.7    26.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 174 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    170P  LEU*     2.9    26.8    +      -       -      +
    171P  ASP*     3.6    18.4    -      -       -      +
    173P  CYS*     1.3    74.6    -      -       -      +
    175P  LYS*     1.3    68.0    +      -       +      +
    177P  GLY*     3.3    11.2    +      -       -      +
    178P  GLU      4.2     6.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 175 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171P  ASP*     3.0    52.2    +      -       -      +
    172P  VAL      3.9     1.1    -      -       -      +
    174P  GLU*     1.3    84.0    -      -       +      +
    176P  TRP*     1.3    58.1    +      -       -      +
    177P  GLY      3.3     0.4    +      -       -      -
    193P  ARG*     4.7     6.2    -      -       -      +
     69Q  GLU*     3.4    50.9    -      -       +      +
     70Q  VAL*     4.9    13.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 176 (chain P). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    872D  PHE*     3.8    17.9    -      +       -      -
    907D  GLN*     5.7     1.8    -      -       -      -
    172P  VAL*     2.8    22.2    +      -       +      +
    173P  CYS*     3.3     5.8    +      -       -      +
    175P  LYS*     1.3    76.4    -      -       -      +
    177P  GLY*     1.3    55.1    +      -       -      +
    178P  GLU*     3.1    22.2    +      -       +      +
    185P  LYS*     3.8    24.2    -      -       +      -
    186P  HIS*     3.5    35.7    -      +       -      -
    189P  GLU*     3.4    36.8    -      -       +      -
     62Q  LYS*     4.6    14.8    -      -       +      +
     65Q  ASP*     4.4    19.8    +      -       +      +
     66Q  LEU*     4.7     2.6    -      -       +      +
     69Q  GLU*     2.6    38.8    +      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il