OCA:1APU

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1APU"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1apu)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1apu

The Resolver thinks MMCif

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TITLE: Crystallographic Analysis of Transition State Mimics Bound to Penicillopepsin: Difluorostatine-and Difluorostatone-Containing Peptides

TITLE: Crystallographic Analysis of a Pepstatin Analogue Binding to the Aspartyl Proteinase Penicillopepsin at 1.8 Angstroms Resolution

TITLE: Aspartic Proteinases and Their Catalytic Pathway

TITLE: Stereochemical Analysis of Peptide Bond Hydrolysis Catalyzed by the Aspartic Proteinase Penicillopepsin

TITLE: X-Ray Diffraction Studies on Penicillopepsin and its Complexes: The Hydrolytic Mechanism

TITLE: Effect of Ph on the Activities of Penicillopepsin and Rhizopus Pepsin and a Proposal for the Productive Substrate Binding Mode in Penicillopepsin

TITLE: Structure and Refinement of Penicillopepsin at 1.8 Angstroms Resolution

TITLE: Conformational Flexibility in the Active Sites of Aspartyl Proteinases Revealed by a Pepstatin Fragment Binding to Penicillopepsin

32L = ethyl (3S,4S)-4-amino-3-hydroxy-6-methylheptanoate

HOH = WATER

IVA = ISOVALERIC ACID

MAN = alpha-D-mannopyranose

Setting space group name to HM:C 1 2 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E

found biomolecule 1: A,B,C,D,E

biomolecule 2 operators 1,2 ASYM_IDs A,B,C,D,E

found biomolecule 2: A,B,C,D,E

assembly operator 1 x,y,z

assembly operator 2 -x+1,y,-z+1

1APU

4 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1apu): 3293 ms

reading 2726 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

2726 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 89 ms